CmaCh01G003140 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NADH dehydrogenase (Ubiquinone) Fe-S protein 5
Location	Cma_Chr01 : 1512018 .. 1516239 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCGAACAAAAATCCATTATAGTCGGGTAATTTTAGTCGCAAATTTCCACTCCGTCACAACGGCTCGAGTCACACCGAACATAACTCGCAAACCAGAGACTCCGATTCAGTGGTAACCTCGAGAGATTCATAAGATGGCTTCAGGCTGGGGAATCACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGACTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTGGAGTGCCTCCACCATTCCAAGGAGGTGAGACCTTCCATTTCCCTTACTTTTTTTCACGTCTGTTTTGTTTTTCCTCCAATTTTTCATGTATAAGTTAGATTAATTGCCTGAATAGGGATTAGATGTGTGGTTCTTTGATTCTTCGAGCCTCTGATGCCTAATGCGACCTTGGCTCATGTTTTCAACATCGCATCCGGAGGCGGTTGCCTGAGATTTGGTTTAGATCTGTTTTTCTATACAACTACAAAATTTCTGTAGGAACTTAAATTGTGATTACTTCGATTTTCGAGGCTTTAGGAGCTAGTGATCGATTAGGGAAAGGTTGAGTCGTATCAATGAAAATAAGAAGGTTCTGTGGCTTCCAGTTCGAGTTTCACATTGTTTCTCAATCTTTTGATGTATGTTTTAGAGTTATCATTAACAAGAATGAATGTTTTATAAAAGCAGGGTGGAGCTCTCAGTCTAAGCTTCTTACATTTTTTGTTACTCGGATAATTAGAGGACGGGTTATCTCCTTTTTCTTAAAGTGAACAGCTTACCACACATTGCTTGTTATTGCTTATCACGATTGCCTCCTTTTTACTAAGTTGGATTAGTGAAAGTTATAGTCTTTTTAGGCATTCTGTTAAATCGCAACAGTATGATTTTATGCTTGTAAGTCCTTGAACTCTGAGGTTTCTGTCTATTTGATCCATGAACTTTCAACTGTGTGCTAAGATCACAAAATTTTCAATTTGATGATGAATATATCTATGAAAATTCTAAATTAATTGACATATTCGATATAAATTTGAATTTTAAGTCTAATGAAACCATACAATTTCAAATTTGTGTCTACTAATCTATGATTTTTTAAAAATTCGAAAGCAATTTGAAAATTGGATAGTTTATGGGCTAAATAGACACAAGGCTCAAGGTTTATAGACTAAATTTATTATTTAACCTCTTTTCCAAGGATATGAATATATGCACAATCTCTTTGGAGAAATAATTCTTGGAGGCCAGAACAATGTGATTGTGGTTTTATATCTTTGCATGTAAGAGAGAGAAACAAAGAAATTATGGTTTACCATGCATCCAAGGGATTTTTTTTTGGGGTGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGTGGGGATATTAAAAAAAATTAAAAGAAATGCGGGGAAGGTGGGTAAGTTTCGTAATTGAACATACAGTGTGTTTATGCTTGATTTTTCGATTCTGCCAGCGGTTTCTCCTCAATGGATTTCAGCAGATCTTTAGGTTGTTAAAGATTCAACTTATCTACGAAGATTTGAATGCGAAAAGACAATTAAACAACACCAAACGCTAAGTTTAACAGCAAACTATGATAAGTAAAGTCAATTTTTGGATAACGTGGTGGCTTTATGTATTGAATAATACAAGAATGTCTTTATATAAGGAAGAGAAGAAACTTTAATGGGGAACAAGTAGGAAATACAAAAGTAATATTTTACGTTGTTGAGGGCGAACTATGTCTATGAGCATTTTAATATGTAAAGTGGTTCGTTTAGCAGTATCAATCTTTGCAACTACAATCTTTCAATATTATTCACCTTGGTGCTGAAATCCTCCACCTTCATCACATTTTCGAATGTTATTTTTGATACTCTGTTTAGTTTCCATTTGTATTTCTTAGATTCCTTACAGATAAGAAGTTGCATTCAGTGGCTTCAGTGTTGCAACTGTTCTTCAATCTCTGTAGTCTTTCCGTGTCTTCTTACTGATAGGGACTATCAAGCGGCAACTCTCCTTTATATCCCTCAGTATATTTCCCCTTGGAGAAGGGGTGCTAGGGTCTGGACCTCTGACCTTTCTAGGGGTTTCTTCTTCCAGTCATATTTTTATTATGTCTTTTCCTCATGCGTCGGTAGCTGCTCTGGTGGCTTCTTTTTTTCCTCCTATGGAAGCTCAAAATTCCTAATGAAGTGACGTTTTATGCATGACAAGTTTTACTTGAGAGGGTTAATATATTCGATTGTGTCCAAAGACACTCTTCCTTAGTTTTGTACTCGCAGTGGTGCATTCTTTGTAGGAGGCATGAGGAGTACATGGATCATTTGTTATGGGAGTGTTAGTTTGCAAACTATCTTTAGGGTCATTGATTGGAGCTTGTTTGGTGTTAGTGACGTGGACCATAGAGATGGACGATCGTTGTTGGAGGGGTGCTTTTGAATCCTCCCTTTAGGGAGAGACGGCTTCCTTGCTGAGAGATGTAATGAGATTTTTTCGGAGAATGATAAGTGGGGTGAGGAGATTTAGAGGTTGTTAGGCTTATGCTTCCTTGTGGGCGTTGGTCATTAGGCCTTTTTGTAGTTGTGGTCTTGGGGTTGTTCTTTTGATCGAAGCTCCTTCTGTAGTTAGAGTCAGACACCTGTTTCTTTTGGGCTTGTTTTTTGTATGATCTTGTAGTCTTTCATTTTTTTCGATGAAAGTTTGATTTCTTTTCCTAAAATAACGAAAGTGTACTTATTCTATCACTTGTTTCTCACACTTCTAGACATGAATATATTAGTGAGAAGTTTTATGGTGGCTGAAGTATTACTCTTTTTTGGGGCTTGAGATCAGAGGGAGATTAATTCAGATTTCTTAAACAAACAAAAAATTTAATCGAAGTGTTTAATTGCAAAATTCATTATACAAGGGCTAAGCACACTGTTGTTATAGAATAGGAAAACCTGGATAAATGTCTAGAGCATGTTTATAAGTGATTTTGTAATGGTTAAAATCACTAGGTTTAGAATTACTCAAAATTTAGTCATTCAAAATCAACTTGATGCATCATTTTACACTTTTAAAGGCGATTTTAGCATCATAAAAATTGGTTTTGAATAATTAAAAGCATGTTTTCAGAGTGGTTTGGAATACCGTACAAGTAATTGTAACCATTTCAAAATCTCCCAAATATGCCCTAAAATGCAAAGAGTATGTTCTGCTTTTATTAAAAATTGATTCTGCTTGCTTTGTAAGAATCCGTCCTAATTCAATTTGCTCGTTTGAACTTTTCCTTACAGTTTCAAAGAAGAAACCGTGTCTACAAAGAGGAGCAGCGTAAACTAAGAGCGGCCAAAGGGGAGGCCAAAGAGGGTAAACATGTTGATGCTGCTCATGCATAGTCATAATCATCATTCAGAGATTGAATAATGCAGAATGCATAGACATGCGTTGTTATTTGAACAGTTTTTGGCTTGTTATTTACATTCTACTCTGTCTTTCTTGAATCCGGTATGAAATTCACAAGTCATGCAACAAGGTCAATTCACTTCTTTTTTTCCTTGCTCTATCAAAAGGGGGCAGCGTTATCTGCTTGATGAGGATGATGTGAATGTGTTAATGCCACTTATTTCCAAGTTTTGGTTTAATCAATAAGCTCTTAGCACATTGTCATTTCTATTGATATAGGATGGCCCTCCTCCCCTTCCCAAATGGTCTGGCGAAGAAGGGTCAATATAGTATATATATTGCCATCCACAGAGAAGGGAGGGTCCTCAACGGATGTCAGAGACGTTTTGAAGGGCCTCTAACTGGTATTACTCACTTACCTCTATTCCCAACCCCAATATGTCGACCTCAAATACAGGATGAAATTATTAAATGGCTAGCGTAGG

mRNA sequence

AAACCCGAACAAAAATCCATTATAGTCGGGTAATTTTAGTCGCAAATTTCCACTCCGTCACAACGGCTCGAGTCACACCGAACATAACTCGCAAACCAGAGACTCCGATTCAGTGGTAACCTCGAGAGATTCATAAGATGGCTTCAGGCTGGGGAATCACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGACTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTGGAGTGCCTCCACCATTCCAAGGAGTTTCAAAGAAGAAACCGTGTCTACAAAGAGGAGCAGCGTAAACTAAGAGCGGCCAAAGGGGAGGCCAAAGAGGGTAAACATGTTGATGCTGCTCATGCATAGTCATAATCATCATTCAGAGATTGAATAATGCAGAATGCATAGACATGCGTTGTTATTTGAACAGTTTTTGGCTTGTTATTTACATTCTACTCTGTCTTTCTTGAATCCGGTATGAAATTCACAAGTCATGCAACAAGGTCAATTCACTTCTTTTTTTCCTTGCTCTATCAAAAGGGGGCAGCGTTATCTGCTTGATGAGGATGATGTGAATGTGTTAATGCCACTTATTTCCAAGTTTTGGTTTAATCAATAAGCTCTTAGCACATTGTCATTTCTATTGATATAGGATGGCCCTCCTCCCCTTCCCAAATGGTCTGGCGAAGAAGGGTCAATATAGTATATATATTGCCATCCACAGAGAAGGGAGGGTCCTCAACGGATGTCAGAGACGTTTTGAAGGGCCTCTAACTGGTATTACTCACTTACCTCTATTCCCAACCCCAATATGTCGACCTCAAATACAGGATGAAATTATTAAATGGCTAGCGTAGG

Coding sequence (CDS)

ATGGCTTCAGGCTGGGGAATCACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGACTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTGGAGTGCCTCCACCATTCCAAGGAGTTTCAAAGAAGAAACCGTGTCTACAAAGAGGAGCAGCGTAAACTAAGAGCGGCCAAAGGGGAGGCCAAAGAGGGTAAACATGTTGATGCTGCTCATGCATAG

Protein sequence

MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKEEQRKLRAAKGEAKEGKHVDAAHA

Homology

[Close]

BLAST of CmaCh01G003140 vs. Swiss-Prot
Match: NDS5A_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A OS=Arabidopsis thaliana GN=At2g47690 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.3e-34
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1   MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
           MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 36  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 95

Query: 61  EQRKLRAA--KG-EAKEGKH 78
           EQRKLRAA  KG EA +G H
Sbjct: 96  EQRKLRAASRKGEEAGDGTH 115

[Close]

BLAST of CmaCh01G003140 vs. Swiss-Prot
Match: NDS5B_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana GN=At3g62790 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-33
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKE 75
          EQRKLRAA  + +E
Sbjct: 61 EQRKLRAASRKGEE 74

[Close]

BLAST of CmaCh01G003140 vs. TrEMBL
Match: A0A0A0KTA7_CUCSA (Fiber protein Fb14 OS=Cucumis sativus GN=Csa_4G001750 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-39
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH KEFQRRNRVYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHFKEFQRRNRVYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAHA 84
          EQRKLRAA+ EAKEGKHVDAAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of CmaCh01G003140 vs. TrEMBL
Match: A0A067JZD5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13929 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFS+CMSRCREPKDCALLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSECMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAHA 84
          EQRKLRAAK +A+ G +V   HA
Sbjct: 61 EQRKLRAAKRKAEGGDNVVNHHA 83

[Close]

BLAST of CmaCh01G003140 vs. TrEMBL
Match: M5W8G3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014148mg PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-33
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMSRCR+PKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWVDFSECMSRCRQPKDCVLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAH 83
          EQRK+RAA   AKEG  VD  H
Sbjct: 61 EQRKIRAA-ARAKEGGEVDKHH 81

[Close]

BLAST of CmaCh01G003140 vs. TrEMBL
Match: Q4TZT1_GOSHI (Fb14 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-33
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGI GNKGRCYDFW+DFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGINGNKGRCYDFWVDFSECMSRCREPKDCGLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAHA 84
          EQRKLRAA  + KEG++V   HA
Sbjct: 61 EQRKLRAAARKDKEGENVVHHHA 83

[Close]

BLAST of CmaCh01G003140 vs. TrEMBL
Match: Q7X9S6_GOSBA (Fiber protein Fb14 OS=Gossypium barbadense PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-33
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGI GNKGRCYDFW+DFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGINGNKGRCYDFWVDFSECMSRCREPKDCGLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAHA 84
          EQRKLRAA  + KEG++V   HA
Sbjct: 61 EQRKLRAAARKDKEGENVVHHHA 83

[Close]

BLAST of CmaCh01G003140 vs. TAIR10
Match: AT2G47690.1 (AT2G47690.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 143.7 bits (361), Expect = 5.2e-35
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1   MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
           MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 36  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 95

Query: 61  EQRKLRAA--KG-EAKEGKH 78
           EQRKLRAA  KG EA +G H
Sbjct: 96  EQRKLRAASRKGEEAGDGTH 115

[Close]

BLAST of CmaCh01G003140 vs. TAIR10
Match: AT3G62790.1 (AT3G62790.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 143.3 bits (360), Expect = 6.8e-35
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKE 75
          EQRKLRAA  + +E
Sbjct: 61 EQRKLRAASRKGEE 74

[Close]

BLAST of CmaCh01G003140 vs. NCBI nr
Match: gi|778689295|ref|XP_011652934.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-39
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH KEFQRRNRVYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHFKEFQRRNRVYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAHA 84
          EQRKLRAA+ EAKEGKHVDAAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of CmaCh01G003140 vs. NCBI nr
Match: gi|659108705|ref|XP_008454345.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGI G+KGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH+KEFQRRNR+YKE
Sbjct: 1  MASGWGIDGSKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHTKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAHA 84
          EQRKLRAA+ EAKEGKHVD AHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDTAHA 83

[Close]

BLAST of CmaCh01G003140 vs. NCBI nr
Match: gi|1009148330|ref|XP_015891880.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFS+CMSRCREPKDC+LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSECMSRCREPKDCSLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVD 80
          EQRKLRAA  + KEG+ VD
Sbjct: 61 EQRKLRAAARKGKEGEDVD 79

[Close]

BLAST of CmaCh01G003140 vs. NCBI nr
Match: gi|802688815|ref|XP_012082763.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-34
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFS+CMSRCREPKDCALLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSECMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAHA 84
          EQRKLRAAK +A+ G +V   HA
Sbjct: 61 EQRKLRAAKRKAEGGDNVVNHHA 83

[Close]

BLAST of CmaCh01G003140 vs. NCBI nr
Match: gi|694415128|ref|XP_009335750.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 151.0 bits (380), Expect = 9.3e-34
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWVDFSECMSRCREPKDCVLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAKGEAKEGKHVDAAH 83
          EQRK+RAA   AKEG  VD  H
Sbjct: 61 EQRKIRAA-ARAKEGGEVDKHH 81

The following BLAST results are available for this feature:

BLAST of CmaCh01G003140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDS5A_ARATH	9.3e-34	86.25	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A OS=Arabidopsis thaliana ...	[more]
NDS5B_ARATH	1.2e-33	86.49	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana ...	[more]

BLAST of CmaCh01G003140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTA7_CUCSA	2.3e-39	95.18	Fiber protein Fb14 OS=Cucumis sativus GN=Csa_4G001750 PE=4 SV=1	[more]
A0A067JZD5_JATCU	1.3e-34	86.75	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13929 PE=4 SV=1	[more]
M5W8G3_PRUPE	1.4e-33	84.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014148mg PE=4 SV=1	[more]
Q4TZT1_GOSHI	1.4e-33	83.13	Fb14 OS=Gossypium hirsutum PE=2 SV=1	[more]
Q7X9S6_GOSBA	1.4e-33	83.13	Fiber protein Fb14 OS=Gossypium barbadense PE=2 SV=1	[more]

BLAST of CmaCh01G003140 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47690.1	5.2e-35	86.25	NADH-ubiquinone oxidoreductase-related	[more]
AT3G62790.1	6.8e-35	86.49	NADH-ubiquinone oxidoreductase-related	[more]

BLAST of CmaCh01G003140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778689295\|ref\|XP_011652934.1\|	3.3e-39	95.18	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|659108705\|ref\|XP_008454345.1\|	1.1e-37	90.36	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1009148330\|ref\|XP_015891880.1\|	1.4e-34	88.61	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|802688815\|ref\|XP_012082763.1\|	1.9e-34	86.75	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|694415128\|ref\|XP_009335750.1\|	9.3e-34	85.37	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019342	NADH_UbQ_OxRdtase_FeS-su5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0009853	photorespiration
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G003140.1	CmaCh01G003140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019342	NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5	PFAM	PF10200	Ndufs5	coord: 12..65 score: 9.
None	No IPR available	unknown	Coil	Coil	coord: 78..83 scor
None	No IPR available	PANTHER	PTHR15224	FAMILY NOT NAMED	coord: 1..69 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G003140	Cucsa.097150	Cucumber (Gy14) v1	cgycmaB0199
CmaCh01G003140	Cla017414	Watermelon (97103) v1	cmawmB416
CmaCh01G003140	Csa4G001750	Cucumber (Chinese Long) v2	cmacuB475
CmaCh01G003140	MELO3C017960	Melon (DHL92) v3.5.1	cmameB434
CmaCh01G003140	ClCG10G010880	Watermelon (Charleston Gray)	cmawcgB387
CmaCh01G003140	CSPI04G00800	Wild cucumber (PI 183967)	cmacpiB478
CmaCh01G003140	CmoCh01G003280	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G003140	CmoCh14G009280	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G003140	Lsi03G010700	Bottle gourd (USVL1VR-Ls)	cmalsiB422
CmaCh01G003140	Cp4.1LG02g16280	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G003140	Cp4.1LG03g05300	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G003140	MELO3C017960.2	Melon (DHL92) v3.6.1	cmamedB501
CmaCh01G003140	CsaV3_4G000760	Cucumber (Chinese Long) v3	cmacucB0567
CmaCh01G003140	Cla97C10G193790	Watermelon (97103) v2	cmawmbB445
CmaCh01G003140	Bhi11G001003	Wax gourd	cmawgoB0553
CmaCh01G003140	CsGy4G000700	Cucumber (Gy14) v2	cgybcmaB516
CmaCh01G003140	Carg11131	Silver-seed gourd	carcmaB1134
CmaCh01G003140	Carg07406	Silver-seed gourd	carcmaB1059

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G003140	CmaCh14G008990	Cucurbita maxima (Rimu)	cmacmaB255

The following block(s) are covering this gene:

None