CmoCh14G008950 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G008950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGamete expressed protein 1, putative
LocationCmo_Chr14 : 4748666 .. 4749124 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGTGTTCGGTTTAAGTGCGATTTGTGGGGCTGGTTTTCGTCTTCTTCGTCCTCGGACTCTACCATGGATCCTTTTAAGCATTACAGTGTTGCTCAATTTTCCATGGAGGGTTTCGATGATCGAAAGGGGGTGAGGCGAATTGAGAATGCTAAGAACAAATTGACTTTGTCCGTTTCTTTCCGGGAAAGTGCTTATAGGCATCTATTTGCGGGCTGCTCTGAGAAAAATTCATATAACATTTTTTATTCCTTGAATTCTCTTGGTATTCAAATACAACAAGTGGCTCAAACGTCAAGGAAACGAGAAGATCACATGGTCACTTTGCTAAACCACTCAAAAGAAGTTTATGAACCATCCAGGAGTTATCTGAATTGGTCTTCGTGGATTGACATTGAATTATCTGAAGAAATTGAAGATTTTGATTATGATCTTCCAGAGGAAACAGGGGAGTAA

mRNA sequence

ATGGAGCGTGTTCGGTTTAAGTGCGATTTGTGGGGCTGGTTTTCGTCTTCTTCGTCCTCGGACTCTACCATGGATCCTTTTAAGCATTACAGTGTTGCTCAATTTTCCATGGAGGGTTTCGATGATCGAAAGGGGGTGAGGCGAATTGAGAATGCTAAGAACAAATTGACTTTGTCCGTTTCTTTCCGGGAAAGTGCTTATAGGCATCTATTTGCGGGCTGCTCTGAGAAAAATTCATATAACATTTTTTATTCCTTGAATTCTCTTGGTATTCAAATACAACAAGTGGCTCAAACGTCAAGGAAACGAGAAGATCACATGGTCACTTTGCTAAACCACTCAAAAGAAGTTTATGAACCATCCAGGAGTTATCTGAATTGGTCTTCGTGGATTGACATTGAATTATCTGAAGAAATTGAAGATTTTGATTATGATCTTCCAGAGGAAACAGGGGAGTAA

Coding sequence (CDS)

ATGGAGCGTGTTCGGTTTAAGTGCGATTTGTGGGGCTGGTTTTCGTCTTCTTCGTCCTCGGACTCTACCATGGATCCTTTTAAGCATTACAGTGTTGCTCAATTTTCCATGGAGGGTTTCGATGATCGAAAGGGGGTGAGGCGAATTGAGAATGCTAAGAACAAATTGACTTTGTCCGTTTCTTTCCGGGAAAGTGCTTATAGGCATCTATTTGCGGGCTGCTCTGAGAAAAATTCATATAACATTTTTTATTCCTTGAATTCTCTTGGTATTCAAATACAACAAGTGGCTCAAACGTCAAGGAAACGAGAAGATCACATGGTCACTTTGCTAAACCACTCAAAAGAAGTTTATGAACCATCCAGGAGTTATCTGAATTGGTCTTCGTGGATTGACATTGAATTATCTGAAGAAATTGAAGATTTTGATTATGATCTTCCAGAGGAAACAGGGGAGTAA
Homology
[Close]
BLAST of CmoCh14G008950 vs. Swiss-Prot
Match: GEX1_ARATH (Protein GAMETE EXPRESSED 1 OS=Arabidopsis thaliana GN=GEX1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.9e-06
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 1 

Query: 8  CDLWGWFSSSSSSDSTMDPF------KHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVS 67
          C  WGWFSSSSS  S  DP+         S   FSME F D+K V+ +E   NKL    S
Sbjct: 24 CHSWGWFSSSSS--SAEDPYSSSFSRSRKSNPDFSMEVFSDQKAVQVLE---NKLVGLTS 83

Query: 68 FRESAYRHLFAGCSE 77
            ++AY +L AGC E
Sbjct: 84 CWQNAYSYLLAGCKE 93

[Close]
BLAST of CmoCh14G008950 vs. TrEMBL
Match: A0A0A0L6W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G194400 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.9e-22
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 1 

Query: 1  MERVRFK---------CDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIEN 60
          MERV F          C+  GWFSSS SSDSTM+P KHY+VA++SMEGFDDRKGVR I+N
Sbjct: 1  MERVLFMVILLVVFPMCESRGWFSSSPSSDSTMNPSKHYTVAEYSMEGFDDRKGVRGIQN 60

Query: 61 AKNKLTLSVSFRESAYRHLFAGCSE 77
          AKNKLTL  S  ESAYRHLF+GCSE
Sbjct: 61 AKNKLTLLNSCWESAYRHLFSGCSE 85

[Close]
BLAST of CmoCh14G008950 vs. TrEMBL
Match: A0A0A0KT36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001620 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 8  CDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVSFRESAY 67
          C+ W WFSSSSSS S+ +  +  S A+F++EGFDD+KGVRRIENAKNKLT+S S  ESAY
Sbjct: 17 CESWNWFSSSSSSASSFNRVEGGSGAEFAIEGFDDQKGVRRIENAKNKLTVSNSCWESAY 76

Query: 68 RHLFAGCSE 77
          RHLFAGCSE
Sbjct: 77 RHLFAGCSE 85

[Close]
BLAST of CmoCh14G008950 vs. TrEMBL
Match: A0A061EBI0_THECC (Gamete expressed protein 1, putative OS=Theobroma cacao GN=TCM_016803 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 7  KCDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVSFRESA 66
          +C  WGWFSSS+ + S     +H S A+FS++G ++ KG+R +E AKNKL  S S  ++A
Sbjct: 23 RCQSWGWFSSSAETHSNTKAIRHASAAEFSVDGLNNEKGIRLLEEAKNKLVGSNSCWKNA 82

Query: 67 YRHLFAGCSE 77
          YRHLFAGC E
Sbjct: 83 YRHLFAGCKE 92

[Close]
BLAST of CmoCh14G008950 vs. TrEMBL
Match: A0A061EJ24_THECC (Gamete expressed protein 1, putative OS=Theobroma cacao GN=TCM_016799 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 7  KCDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVSFRESA 66
          KC  WGWFSSS  + S      H S+A+FS++G +D KG+R +E+AKNKL  S S  ++A
Sbjct: 23 KCQSWGWFSSSVETHSNTKAIHHASMAKFSIDGLNDEKGIRLLEDAKNKLVGSNSCWKNA 82

Query: 67 YRHLFAGCSE 77
          Y+HLFAGC E
Sbjct: 83 YKHLFAGCKE 92

[Close]
BLAST of CmoCh14G008950 vs. TrEMBL
Match: G7IU52_MEDTR (Gamete-like protein OS=Medicago truncatula GN=MTR_2g093230 PE=4 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 7  KCDLWGWFSSSS---SSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVSFR 66
          +C+ WGWFSSS    SSD+        S A+FS+E F+D KGV+ IENAKNK+  S +  
Sbjct: 18 RCESWGWFSSSKESHSSDNGNQARFRGSNAEFSIEAFNDPKGVKLIENAKNKMVGSNTCW 77

Query: 67 ESAYRHLFAGCSE 77
          ++AY+HLFAGCSE
Sbjct: 78 QNAYQHLFAGCSE 90

[Close]
BLAST of CmoCh14G008950 vs. TAIR10
Match: AT5G55490.1 (AT5G55490.1 gamete expressed protein 1)

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 1 

Query: 8  CDLWGWFSSSSSSDSTMDPF------KHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVS 67
          C  WGWFSSSSS  S  DP+         S   FSME F D+K V+ +E   NKL    S
Sbjct: 24 CHSWGWFSSSSS--SAEDPYSSSFSRSRKSNPDFSMEVFSDQKAVQVLE---NKLVGLTS 83

Query: 68 FRESAYRHLFAGCSE 77
            ++AY +L AGC E
Sbjct: 84 CWQNAYSYLLAGCKE 93

[Close]
BLAST of CmoCh14G008950 vs. NCBI nr
Match: gi|700202340|gb|KGN57473.1| (hypothetical protein Csa_3G194400 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 1 

Query: 1  MERVRFK---------CDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIEN 60
          MERV F          C+  GWFSSS SSDSTM+P KHY+VA++SMEGFDDRKGVR I+N
Sbjct: 1  MERVLFMVILLVVFPMCESRGWFSSSPSSDSTMNPSKHYTVAEYSMEGFDDRKGVRGIQN 60

Query: 61 AKNKLTLSVSFRESAYRHLFAGCSE 77
          AKNKLTL  S  ESAYRHLF+GCSE
Sbjct: 61 AKNKLTLLNSCWESAYRHLFSGCSE 85

[Close]
BLAST of CmoCh14G008950 vs. NCBI nr
Match: gi|659112463|ref|XP_008456236.1| (PREDICTED: LOW QUALITY PROTEIN: protein GAMETE EXPRESSED 1-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 1  MERVRF---------KCDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIEN 60
          MERV F          C+ WGWFSSS  S+ST DP KHY+VA+FSMEGFDDRKGVRRI+N
Sbjct: 1  MERVLFLVILLVVIPMCESWGWFSSSPFSESTTDPSKHYTVAKFSMEGFDDRKGVRRIQN 60

Query: 61 AKNKLTLSVSFRESAYRHLFAGCSE 77
          AKNKLTL  S  ESAYRHLFA  SE
Sbjct: 61 AKNKLTLPNSCWESAYRHLFASFSE 85

[Close]
BLAST of CmoCh14G008950 vs. NCBI nr
Match: gi|659108741|ref|XP_008454365.1| (PREDICTED: protein GAMETE EXPRESSED 1 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 8  CDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVSFRESAY 67
          C+ W WFSSSSSS S+ D  +  SVA+F++EGFDD+KGVRRIENAKNKL++S S   SAY
Sbjct: 17 CESWNWFSSSSSSGSSFDRVEGGSVAEFAIEGFDDQKGVRRIENAKNKLSVSNSCWGSAY 76

Query: 68 RHLFAGCSE 77
          RHLFAGCSE
Sbjct: 77 RHLFAGCSE 85

[Close]
BLAST of CmoCh14G008950 vs. NCBI nr
Match: gi|449469316|ref|XP_004152367.1| (PREDICTED: protein GAMETE EXPRESSED 1 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 8  CDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVSFRESAY 67
          C+ W WFSSSSSS S+ +  +  S A+F++EGFDD+KGVRRIENAKNKLT+S S  ESAY
Sbjct: 17 CESWNWFSSSSSSASSFNRVEGGSGAEFAIEGFDDQKGVRRIENAKNKLTVSNSCWESAY 76

Query: 68 RHLFAGCSE 77
          RHLFAGCSE
Sbjct: 77 RHLFAGCSE 85

[Close]
BLAST of CmoCh14G008950 vs. NCBI nr
Match: gi|700197637|gb|KGN52795.1| (hypothetical protein Csa_4G001620 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 8  CDLWGWFSSSSSSDSTMDPFKHYSVAQFSMEGFDDRKGVRRIENAKNKLTLSVSFRESAY 67
          C+ W WFSSSSSS S+ +  +  S A+F++EGFDD+KGVRRIENAKNKLT+S S  ESAY
Sbjct: 17 CESWNWFSSSSSSASSFNRVEGGSGAEFAIEGFDDQKGVRRIENAKNKLTVSNSCWESAY 76

Query: 68 RHLFAGCSE 77
          RHLFAGCSE
Sbjct: 77 RHLFAGCSE 85

The following BLAST results are available for this feature:
BLAST of CmoCh14G008950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GEX1_ARATH3.9e-0645.33Protein GAMETE EXPRESSED 1 OS=Arabidopsis thaliana GN=GEX1 PE=1 SV=1[more]
BLAST of CmoCh14G008950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6W7_CUCSA7.9e-2268.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G194400 PE=4 SV=1[more]
A0A0A0KT36_CUCSA1.2e-1769.57Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001620 PE=4 SV=1[more]
A0A061EBI0_THECC1.5e-1251.43Gamete expressed protein 1, putative OS=Theobroma cacao GN=TCM_016803 PE=4 SV=1[more]
A0A061EJ24_THECC1.5e-1252.86Gamete expressed protein 1, putative OS=Theobroma cacao GN=TCM_016799 PE=4 SV=1[more]
G7IU52_MEDTR1.1e-1053.42Gamete-like protein OS=Medicago truncatula GN=MTR_2g093230 PE=4 SV=2[more]
BLAST of CmoCh14G008950 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G55490.12.2e-0745.33 gamete expressed protein 1[more]
BLAST of CmoCh14G008950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202340|gb|KGN57473.1|1.1e-2168.24hypothetical protein Csa_3G194400 [Cucumis sativus][more]
gi|659112463|ref|XP_008456236.1|1.5e-2168.24PREDICTED: LOW QUALITY PROTEIN: protein GAMETE EXPRESSED 1-like [Cucumis melo][more]
gi|659108741|ref|XP_008454365.1|1.0e-1769.57PREDICTED: protein GAMETE EXPRESSED 1 [Cucumis melo][more]
gi|449469316|ref|XP_004152367.1|1.7e-1769.57PREDICTED: protein GAMETE EXPRESSED 1 [Cucumis sativus][more]
gi|700197637|gb|KGN52795.1|1.7e-1769.57hypothetical protein Csa_4G001620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048856 anatomical structure development
biological_process GO:0007275 multicellular organism development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G008950.1CmoCh14G008950.1mRNA