CmoCh13G011710 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G011710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	basic helix-loop-helix (bHLH) DNA-binding family protein
Location	Cmo_Chr13 : 9370016 .. 9370355 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCACCGTATATACGTCCACCCTTTTCTTAATTATATACGTCCACCCTTTTCTTAATTATGATACAAGCGATTTTATTAACTTATTACAAATATTTGCAGGTATCACCGGCAGAGGTTTTGAAGGAGACGTGTGATTACATCAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTGAAATGGTTAAACATCTCCTCAGTTGA

mRNA sequence

ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCACCGTATCACCGGCAGAGGTTTTGAAGGAGACGTGTGATTACATCAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTGAAATGGTTAAACATCTCCTCAGTTGA

Coding sequence (CDS)

ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCACCGTATCACCGGCAGAGGTTTTGAAGGAGACGTGTGATTACATCAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTGAAATGGTTAAACATCTCCTCAGTTGA

Homology

[Close]

BLAST of CmoCh13G011710 vs. Swiss-Prot
Match: PRE5_ARATH (Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-09
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + DDQ+ +L+S+L+  LP++ H    S  VS ++VL+ETC+YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLDSMGVD 73
           + LDS+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of CmoCh13G011710 vs. Swiss-Prot
Match: PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-09
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          SS + DDQ+ +L+S+LQ L+P+L      S  VS ++VL+ETC+YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRR--RRSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQL---DSMGVDFEMVKHLLS 82
           + L   D    +  +++ LL+
Sbjct: 74 SELLASTDDNSAEAAIIRSLLN 93

[Close]

BLAST of CmoCh13G011710 vs. Swiss-Prot
Match: PRE2_ARATH (Transcription factor PRE2 OS=Arabidopsis thaliana GN=PRE2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 30/68 (44.12%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +SS + DDQ+ +L+S+L+  +P++      S TVS ++VL+ETC+YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLDSM 70
          L + L+S+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of CmoCh13G011710 vs. Swiss-Prot
Match: PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-08
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + +DQ+ +L+ +LQ LLP+L  +   S  VS A VL++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDS-RRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]

BLAST of CmoCh13G011710 vs. Swiss-Prot
Match: ILI7_ORYSJ (Transcription factor ILI7 OS=Oryza sativa subsp. japonica GN=ILI7 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-08
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +++ + D+Q+ +L+S+LQ LLP+    L ++  V  A VL+ETC YI+ L REVDDLSER
Sbjct: 11 SAARITDEQIGDLVSKLQALLPEAR--LRSNDRVPSARVLQETCSYIRSLHREVDDLSER 70

Query: 62 LWKQLDSMGV 72
          L + L +  V
Sbjct: 71 LAELLAAADV 78

[Close]

BLAST of CmoCh13G011710 vs. TrEMBL
Match: A0A0A0LQ05_CUCSA (DNA binding protein OS=Cucumis sativus GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-27
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSE 60
          MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  E+LKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKHLLS 82
          RLWKQLDSMG+DFEMVK LLS
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLS 81

[Close]

BLAST of CmoCh13G011710 vs. TrEMBL
Match: A0A0D2T8R1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G192000 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-12
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          AS+ + DD+L  L+ RL TLLPQLNH  H   + S  ++LKETC Y+++LQ+EVDDLSER
Sbjct: 4  ASNKITDDELNALILRLGTLLPQLNHGRHGRASSSTTKILKETCSYVRRLQKEVDDLSER 63

Query: 62 LWKQLDSMGV---DFEMVKHLL 81
          L + LDSM +   D E + +LL
Sbjct: 64 LSQCLDSMDISSSDAEFLTNLL 85

[Close]

BLAST of CmoCh13G011710 vs. TrEMBL
Match: A0A0D2SB65_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G036300 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-09
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +S+ + DD+L  L+ RLQTLLPQL+ + H    VS A+VL E C YI++LQ EVD LS R
Sbjct: 8  SSNKITDDELNALILRLQTLLPQLDQSRHGR--VSAAKVLNEICSYIRRLQNEVDGLSGR 67

Query: 62 LWKQLDSM---GVDFEMVKHLL 81
          L + LDSM   G D E+V+ LL
Sbjct: 68 LSQCLDSMDLTGFDAEIVRDLL 87

[Close]

BLAST of CmoCh13G011710 vs. TrEMBL
Match: D7SID5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05950 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.2e-09
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + DD++ +L+ +LQ LLP  N    TST  S   +LKETC YIK+L REV DLSERL
Sbjct: 8  ASRVTDDEINDLILKLQALLPHSNQR-RTSTGASAWRILKETCSYIKRLHREVGDLSERL 67

Query: 63 WKQLDSM----GVDFEMVKHLL 81
           + LDS+    GV+ E ++ LL
Sbjct: 68 SQLLDSLDNINGVEVEQLRSLL 88

[Close]

BLAST of CmoCh13G011710 vs. TrEMBL
Match: V4THM7_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024517mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 2   ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
           ++S + +D++ NL+ +L+ LLP+LN     + TV  +EV+KETC+YI+ LQ E DDLSER
Sbjct: 29  SASKITEDEINNLIMKLRPLLPRLNQ--RRNGTVPASEVVKETCNYIRSLQSEADDLSER 88

Query: 62  LWKQL---DSMGVDFEMVKHLL 81
           L + L   DS GVD  ++ +LL
Sbjct: 89  LSQLLGSTDSNGVDITLIINLL 108

[Close]

BLAST of CmoCh13G011710 vs. TAIR10
Match: AT3G28857.1 (AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 63.2 bits (152), Expect = 8.7e-11
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + DDQ+ +L+S+L+  LP++ H    S  VS ++VL+ETC+YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLDSMGVD 73
           + LDS+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of CmoCh13G011710 vs. TAIR10
Match: AT1G26945.1 (AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-10
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          SS + DDQ+ +L+S+LQ L+P+L      S  VS ++VL+ETC+YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRR--RRSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQL---DSMGVDFEMVKHLLS 82
           + L   D    +  +++ LL+
Sbjct: 74 SELLASTDDNSAEAAIIRSLLN 93

[Close]

BLAST of CmoCh13G011710 vs. TAIR10
Match: AT5G15160.1 (AT5G15160.1 BANQUO 2)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-10
Identity = 30/68 (44.12%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +SS + DDQ+ +L+S+L+  +P++      S TVS ++VL+ETC+YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLDSM 70
          L + L+S+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of CmoCh13G011710 vs. TAIR10
Match: AT1G74500.1 (AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-09
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + +DQ+ +L+ +LQ LLP+L  +   S  VS A VL++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDS-RRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]

BLAST of CmoCh13G011710 vs. TAIR10
Match: AT3G47710.1 (AT3G47710.1 BANQUO 3)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + D+Q+ +L+ +L  LLP+L +    S  VS + VL+ETC YI+ L +EVDDLSERL
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANN-RRSGKVSASRVLQETCSYIRNLSKEVDDLSERL 72

Query: 63 WKQLDS 69
           + L+S
Sbjct: 73 SQLLES 77

[Close]

BLAST of CmoCh13G011710 vs. NCBI nr
Match: gi|778656795|ref|XP_011649678.1| (PREDICTED: transcription factor PRE5-like [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-27
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSE 60
          MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  E+LKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKHLLS 82
          RLWKQLDSMG+DFEMVK LLS
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLS 81

[Close]

BLAST of CmoCh13G011710 vs. NCBI nr
Match: gi|659066348|ref|XP_008440200.1| (PREDICTED: transcription factor PRE5-like [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-24
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1


Query: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSE 60
          MASS L D++L+NL+S+L+TLLPQLNH    S+  S  E+LKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKHLL 81
          RLWKQLDSMGVDFEMVK LL
Sbjct: 61 RLWKQLDSMGVDFEMVKDLL 80

[Close]

BLAST of CmoCh13G011710 vs. NCBI nr
Match: gi|823202095|ref|XP_012435732.1| (PREDICTED: transcription factor ILI3-like [Gossypium raimondii])

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-12
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          AS+ + DD+L  L+ RL TLLPQLNH  H   + S  ++LKETC Y+++LQ+EVDDLSER
Sbjct: 4  ASNKITDDELNALILRLGTLLPQLNHGRHGRASSSTTKILKETCSYVRRLQKEVDDLSER 63

Query: 62 LWKQLDSMGV---DFEMVKHLL 81
          L + LDSM +   D E + +LL
Sbjct: 64 LSQCLDSMDISSSDAEFLTNLL 85

[Close]

BLAST of CmoCh13G011710 vs. NCBI nr
Match: gi|658001351|ref|XP_008393138.1| (PREDICTED: transcription factor PRE6-like [Malus domestica])

HSP 1 Score: 71.2 bits (173), Expect = 9.1e-10
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 8  DDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLD 67
          DD+++ L+S+LQ LLPQL+H    +  VS + +L+ETC YIK+L REV+DLS+R+ + LD
Sbjct: 17 DDEIKELISKLQPLLPQLHHX--RNAPVSASSILEETCSYIKRLHREVEDLSQRISQLLD 76

Query: 68 SMG---VDFEMVKHLL 81
          S G   VD E+++ LL
Sbjct: 77 SAGISDVDEELIRRLL 90

[Close]

BLAST of CmoCh13G011710 vs. NCBI nr
Match: gi|823181272|ref|XP_012488176.1| (PREDICTED: transcription factor PRE4-like [Gossypium raimondii])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +S+ + DD+L  L+ RLQTLLPQL+ + H    VS A+VL E C YI++LQ EVD LS R
Sbjct: 8  SSNKITDDELNALILRLQTLLPQLDQSRHGR--VSAAKVLNEICSYIRRLQNEVDGLSGR 67

Query: 62 LWKQLDSM---GVDFEMVKHLL 81
          L + LDSM   G D E+V+ LL
Sbjct: 68 LSQCLDSMDLTGFDAEIVRDLL 87

The following BLAST results are available for this feature:

BLAST of CmoCh13G011710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRE5_ARATH	1.6e-09	48.57	Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1	[more]
PRE6_ARATH	4.5e-09	43.90	Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1	[more]
PRE2_ARATH	1.3e-08	44.12	Transcription factor PRE2 OS=Arabidopsis thaliana GN=PRE2 PE=1 SV=1	[more]
PRE3_ARATH	5.0e-08	51.67	Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1	[more]
ILI7_ORYSJ	8.5e-08	45.71	Transcription factor ILI7 OS=Oryza sativa subsp. japonica GN=ILI7 PE=3 SV=1	[more]

BLAST of CmoCh13G011710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ05_CUCSA	1.5e-27	80.25	DNA binding protein OS=Cucumis sativus GN=Csa_1G032990 PE=4 SV=1	[more]
A0A0D2T8R1_GOSRA	2.3e-12	52.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G192000 PE=4 SV=1	[more]
A0A0D2SB65_GOSRA	2.4e-09	52.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G036300 PE=4 SV=1	[more]
D7SID5_VITVI	9.2e-09	48.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05950 PE=4 SV=...	[more]
V4THM7_9ROSI	1.2e-08	46.34	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024517mg PE=...	[more]

BLAST of CmoCh13G011710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28857.1	8.7e-11	48.57	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G26945.1	2.5e-10	43.90	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	7.4e-10	44.12	BANQUO 2	[more]
AT1G74500.1	2.8e-09	51.67	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G47710.1	1.8e-08	46.97	BANQUO 3	[more]

BLAST of CmoCh13G011710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656795\|ref\|XP_011649678.1\|	2.2e-27	80.25	PREDICTED: transcription factor PRE5-like [Cucumis sativus]	[more]
gi\|659066348\|ref\|XP_008440200.1\|	3.8e-24	75.00	PREDICTED: transcription factor PRE5-like [Cucumis melo]	[more]
gi\|823202095\|ref\|XP_012435732.1\|	3.3e-12	52.44	PREDICTED: transcription factor ILI3-like [Gossypium raimondii]	[more]
gi\|658001351\|ref\|XP_008393138.1\|	9.1e-10	50.00	PREDICTED: transcription factor PRE6-like [Malus domestica]	[more]
gi\|823181272\|ref\|XP_012488176.1\|	3.5e-09	52.44	PREDICTED: transcription factor PRE4-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G011710.1	CmoCh13G011710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 9..62 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 9..52 score: 3.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 1..51 score: 8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 9..62 score: 2.2
None	No IPR available	unknown	Coil	Coil	coord: 41..68 scor
None	No IPR available	PANTHER	PTHR38546	FAMILY NOT NAMED	coord: 1..72 score: 4.3
None	No IPR available	PANTHER	PTHR38546:SF1	SUBFAMILY NOT NAMED	coord: 1..72 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G011710	Cucsa.112580	Cucumber (Gy14) v1	cgycmoB0260
CmoCh13G011710	CmaCh13G011190	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G011710	Cla018626	Watermelon (97103) v1	cmowmB196
CmoCh13G011710	Csa1G032990	Cucumber (Chinese Long) v2	cmocuB191
CmoCh13G011710	MELO3C001968	Melon (DHL92) v3.5.1	cmomeB184
CmoCh13G011710	ClCG04G012420	Watermelon (Charleston Gray)	cmowcgB193
CmoCh13G011710	CSPI01G05420	Wild cucumber (PI 183967)	cmocpiB195
CmoCh13G011710	Lsi02G000560	Bottle gourd (USVL1VR-Ls)	cmolsiB193
CmoCh13G011710	Cp4.1LG20g00390	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G011710	Cp4.1LG02g10170	Cucurbita pepo (Zucchini)	cmocpeB210
CmoCh13G011710	MELO3C001968.2	Melon (DHL92) v3.6.1	cmomedB207
CmoCh13G011710	CsaV3_1G005290	Cucumber (Chinese Long) v3	cmocucB0224
CmoCh13G011710	CsaV3_5G032530	Cucumber (Chinese Long) v3	cmocucB0249
CmoCh13G011710	CsaV3_1G002240	Cucumber (Chinese Long) v3	cmocucB0231
CmoCh13G011710	Cla97C04G079410	Watermelon (97103) v2	cmowmbB219
CmoCh13G011710	Bhi08G001637	Wax gourd	cmowgoB0248
CmoCh13G011710	CsGy1G005170	Cucumber (Gy14) v2	cgybcmoB060
CmoCh13G011710	Carg18179	Silver-seed gourd	carcmoB0840
CmoCh13G011710	Carg04718	Silver-seed gourd	carcmoB0526
CmoCh13G011710	Carg21662	Silver-seed gourd	carcmoB0067

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G011710	CmoCh01G008160	Cucurbita moschata (Rifu)	cmocmoB172

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G011710	Silver-seed gourd	carcmoB0138
CmoCh13G011710	Watermelon (97103) v2	cmowmbB221
CmoCh13G011710	Wax gourd	cmowgoB0274
CmoCh13G011710	Cucumber (Gy14) v1	cgycmoB0787
CmoCh13G011710	Cucurbita maxima (Rimu)	cmacmoB457
CmoCh13G011710	Wild cucumber (PI 183967)	cmocpiB215
CmoCh13G011710	Cucumber (Chinese Long) v2	cmocuB213
CmoCh13G011710	Watermelon (Charleston Gray)	cmowcgB194
CmoCh13G011710	Watermelon (97103) v1	cmowmB181
CmoCh13G011710	Bottle gourd (USVL1VR-Ls)	cmolsiB204
CmoCh13G011710	Cucumber (Gy14) v2	cgybcmoB565