CmoCh13G011710.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G011710.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	basic helix-loop-helix (bHLH) DNA-binding family protein
Location	Cmo_Chr13 : 9370016 .. 9370355 (+)
Sequence length	246

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCACCGTATATACGTCCACCCTTTTCTTAATTATATACGTCCACCCTTTTCTTAATTATGATACAAGCGATTTTATTAACTTATTACAAATATTTGCAGGTATCACCGGCAGAGGTTTTGAAGGAGACGTGTGATTACATCAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTGAAATGGTTAAACATCTCCTCAGTTGA

mRNA sequence

ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCACCGTATCACCGGCAGAGGTTTTGAAGGAGACGTGTGATTACATCAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTGAAATGGTTAAACATCTCCTCAGTTGA

Coding sequence (CDS)

ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCACCGTATCACCGGCAGAGGTTTTGAAGGAGACGTGTGATTACATCAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTGAAATGGTTAAACATCTCCTCAGTTGA

Homology

[Close]

BLAST of CmoCh13G011710.1 vs. Swiss-Prot
Match: PRE5_ARATH (Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-09
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + DDQ+ +L+S+L+  LP++ H    S  VS ++VL+ETC+YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLDSMGVD 73
           + LDS+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of CmoCh13G011710.1 vs. Swiss-Prot
Match: PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-09
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          SS + DDQ+ +L+S+LQ L+P+L      S  VS ++VL+ETC+YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRR--RRSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQL---DSMGVDFEMVKHLLS 82
           + L   D    +  +++ LL+
Sbjct: 74 SELLASTDDNSAEAAIIRSLLN 93

[Close]

BLAST of CmoCh13G011710.1 vs. Swiss-Prot
Match: PRE2_ARATH (Transcription factor PRE2 OS=Arabidopsis thaliana GN=PRE2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 30/68 (44.12%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +SS + DDQ+ +L+S+L+  +P++      S TVS ++VL+ETC+YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLDSM 70
          L + L+S+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of CmoCh13G011710.1 vs. Swiss-Prot
Match: PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-08
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + +DQ+ +L+ +LQ LLP+L  +   S  VS A VL++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDS-RRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]

BLAST of CmoCh13G011710.1 vs. Swiss-Prot
Match: ILI7_ORYSJ (Transcription factor ILI7 OS=Oryza sativa subsp. japonica GN=ILI7 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-08
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +++ + D+Q+ +L+S+LQ LLP+    L ++  V  A VL+ETC YI+ L REVDDLSER
Sbjct: 11 SAARITDEQIGDLVSKLQALLPEAR--LRSNDRVPSARVLQETCSYIRSLHREVDDLSER 70

Query: 62 LWKQLDSMGV 72
          L + L +  V
Sbjct: 71 LAELLAAADV 78

[Close]

BLAST of CmoCh13G011710.1 vs. TrEMBL
Match: A0A0A0LQ05_CUCSA (DNA binding protein OS=Cucumis sativus GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-27
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSE 60
          MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  E+LKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKHLLS 82
          RLWKQLDSMG+DFEMVK LLS
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLS 81

[Close]

BLAST of CmoCh13G011710.1 vs. TrEMBL
Match: A0A0D2T8R1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G192000 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-12
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          AS+ + DD+L  L+ RL TLLPQLNH  H   + S  ++LKETC Y+++LQ+EVDDLSER
Sbjct: 4  ASNKITDDELNALILRLGTLLPQLNHGRHGRASSSTTKILKETCSYVRRLQKEVDDLSER 63

Query: 62 LWKQLDSMGV---DFEMVKHLL 81
          L + LDSM +   D E + +LL
Sbjct: 64 LSQCLDSMDISSSDAEFLTNLL 85

[Close]

BLAST of CmoCh13G011710.1 vs. TrEMBL
Match: A0A0D2SB65_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G036300 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-09
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +S+ + DD+L  L+ RLQTLLPQL+ + H    VS A+VL E C YI++LQ EVD LS R
Sbjct: 8  SSNKITDDELNALILRLQTLLPQLDQSRHGR--VSAAKVLNEICSYIRRLQNEVDGLSGR 67

Query: 62 LWKQLDSM---GVDFEMVKHLL 81
          L + LDSM   G D E+V+ LL
Sbjct: 68 LSQCLDSMDLTGFDAEIVRDLL 87

[Close]

BLAST of CmoCh13G011710.1 vs. TrEMBL
Match: D7SID5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05950 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.2e-09
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + DD++ +L+ +LQ LLP  N    TST  S   +LKETC YIK+L REV DLSERL
Sbjct: 8  ASRVTDDEINDLILKLQALLPHSNQR-RTSTGASAWRILKETCSYIKRLHREVGDLSERL 67

Query: 63 WKQLDSM----GVDFEMVKHLL 81
           + LDS+    GV+ E ++ LL
Sbjct: 68 SQLLDSLDNINGVEVEQLRSLL 88

[Close]

BLAST of CmoCh13G011710.1 vs. TrEMBL
Match: V4THM7_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024517mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 2   ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
           ++S + +D++ NL+ +L+ LLP+LN     + TV  +EV+KETC+YI+ LQ E DDLSER
Sbjct: 29  SASKITEDEINNLIMKLRPLLPRLNQ--RRNGTVPASEVVKETCNYIRSLQSEADDLSER 88

Query: 62  LWKQL---DSMGVDFEMVKHLL 81
           L + L   DS GVD  ++ +LL
Sbjct: 89  LSQLLGSTDSNGVDITLIINLL 108

[Close]

BLAST of CmoCh13G011710.1 vs. TAIR10
Match: AT3G28857.1 (AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 63.2 bits (152), Expect = 8.7e-11
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + DDQ+ +L+S+L+  LP++ H    S  VS ++VL+ETC+YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLDSMGVD 73
           + LDS+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of CmoCh13G011710.1 vs. TAIR10
Match: AT1G26945.1 (AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-10
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          SS + DDQ+ +L+S+LQ L+P+L      S  VS ++VL+ETC+YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRR--RRSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQL---DSMGVDFEMVKHLLS 82
           + L   D    +  +++ LL+
Sbjct: 74 SELLASTDDNSAEAAIIRSLLN 93

[Close]

BLAST of CmoCh13G011710.1 vs. TAIR10
Match: AT5G15160.1 (AT5G15160.1 BANQUO 2)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-10
Identity = 30/68 (44.12%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +SS + DDQ+ +L+S+L+  +P++      S TVS ++VL+ETC+YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLDSM 70
          L + L+S+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of CmoCh13G011710.1 vs. TAIR10
Match: AT1G74500.1 (AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-09
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + +DQ+ +L+ +LQ LLP+L  +   S  VS A VL++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDS-RRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]

BLAST of CmoCh13G011710.1 vs. TAIR10
Match: AT3G47710.1 (AT3G47710.1 BANQUO 3)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1


Query: 3  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL 62
          +S + D+Q+ +L+ +L  LLP+L +    S  VS + VL+ETC YI+ L +EVDDLSERL
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANN-RRSGKVSASRVLQETCSYIRNLSKEVDDLSERL 72

Query: 63 WKQLDS 69
           + L+S
Sbjct: 73 SQLLES 77

[Close]

BLAST of CmoCh13G011710.1 vs. NCBI nr
Match: gi|778656795|ref|XP_011649678.1| (PREDICTED: transcription factor PRE5-like [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-27
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSE 60
          MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  E+LKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKHLLS 82
          RLWKQLDSMG+DFEMVK LLS
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLS 81

[Close]

BLAST of CmoCh13G011710.1 vs. NCBI nr
Match: gi|659066348|ref|XP_008440200.1| (PREDICTED: transcription factor PRE5-like [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-24
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1


Query: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSE 60
          MASS L D++L+NL+S+L+TLLPQLNH    S+  S  E+LKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKHLL 81
          RLWKQLDSMGVDFEMVK LL
Sbjct: 61 RLWKQLDSMGVDFEMVKDLL 80

[Close]

BLAST of CmoCh13G011710.1 vs. NCBI nr
Match: gi|823202095|ref|XP_012435732.1| (PREDICTED: transcription factor ILI3-like [Gossypium raimondii])

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-12
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          AS+ + DD+L  L+ RL TLLPQLNH  H   + S  ++LKETC Y+++LQ+EVDDLSER
Sbjct: 4  ASNKITDDELNALILRLGTLLPQLNHGRHGRASSSTTKILKETCSYVRRLQKEVDDLSER 63

Query: 62 LWKQLDSMGV---DFEMVKHLL 81
          L + LDSM +   D E + +LL
Sbjct: 64 LSQCLDSMDISSSDAEFLTNLL 85

[Close]

BLAST of CmoCh13G011710.1 vs. NCBI nr
Match: gi|658001351|ref|XP_008393138.1| (PREDICTED: transcription factor PRE6-like [Malus domestica])

HSP 1 Score: 71.2 bits (173), Expect = 9.1e-10
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 8  DDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLD 67
          DD+++ L+S+LQ LLPQL+H    +  VS + +L+ETC YIK+L REV+DLS+R+ + LD
Sbjct: 17 DDEIKELISKLQPLLPQLHHX--RNAPVSASSILEETCSYIKRLHREVEDLSQRISQLLD 76

Query: 68 SMG---VDFEMVKHLL 81
          S G   VD E+++ LL
Sbjct: 77 SAGISDVDEELIRRLL 90

[Close]

BLAST of CmoCh13G011710.1 vs. NCBI nr
Match: gi|823181272|ref|XP_012488176.1| (PREDICTED: transcription factor PRE4-like [Gossypium raimondii])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 2  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSER 61
          +S+ + DD+L  L+ RLQTLLPQL+ + H    VS A+VL E C YI++LQ EVD LS R
Sbjct: 8  SSNKITDDELNALILRLQTLLPQLDQSRHGR--VSAAKVLNEICSYIRRLQNEVDGLSGR 67

Query: 62 LWKQLDSM---GVDFEMVKHLL 81
          L + LDSM   G D E+V+ LL
Sbjct: 68 LSQCLDSMDLTGFDAEIVRDLL 87

The following BLAST results are available for this feature:

BLAST of CmoCh13G011710.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRE5_ARATH	1.6e-09	48.57	Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1	[more]
PRE6_ARATH	4.5e-09	43.90	Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1	[more]
PRE2_ARATH	1.3e-08	44.12	Transcription factor PRE2 OS=Arabidopsis thaliana GN=PRE2 PE=1 SV=1	[more]
PRE3_ARATH	5.0e-08	51.67	Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1	[more]
ILI7_ORYSJ	8.5e-08	45.71	Transcription factor ILI7 OS=Oryza sativa subsp. japonica GN=ILI7 PE=3 SV=1	[more]

BLAST of CmoCh13G011710.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ05_CUCSA	1.5e-27	80.25	DNA binding protein OS=Cucumis sativus GN=Csa_1G032990 PE=4 SV=1	[more]
A0A0D2T8R1_GOSRA	2.3e-12	52.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G192000 PE=4 SV=1	[more]
A0A0D2SB65_GOSRA	2.4e-09	52.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G036300 PE=4 SV=1	[more]
D7SID5_VITVI	9.2e-09	48.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05950 PE=4 SV=...	[more]
V4THM7_9ROSI	1.2e-08	46.34	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024517mg PE=...	[more]

BLAST of CmoCh13G011710.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28857.1	8.7e-11	48.57	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G26945.1	2.5e-10	43.90	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	7.4e-10	44.12	BANQUO 2	[more]
AT1G74500.1	2.8e-09	51.67	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G47710.1	1.8e-08	46.97	BANQUO 3	[more]

BLAST of CmoCh13G011710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656795\|ref\|XP_011649678.1\|	2.2e-27	80.25	PREDICTED: transcription factor PRE5-like [Cucumis sativus]	[more]
gi\|659066348\|ref\|XP_008440200.1\|	3.8e-24	75.00	PREDICTED: transcription factor PRE5-like [Cucumis melo]	[more]
gi\|823202095\|ref\|XP_012435732.1\|	3.3e-12	52.44	PREDICTED: transcription factor ILI3-like [Gossypium raimondii]	[more]
gi\|658001351\|ref\|XP_008393138.1\|	9.1e-10	50.00	PREDICTED: transcription factor PRE6-like [Malus domestica]	[more]
gi\|823181272\|ref\|XP_012488176.1\|	3.5e-09	52.44	PREDICTED: transcription factor PRE4-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G011710	CmoCh13G011710	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G011710.1	CmoCh13G011710.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G011710.1.exon.1	CmoCh13G011710.1.exon.1	exon
CmoCh13G011710.1.exon.2	CmoCh13G011710.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G011710.1.CDS.1	CmoCh13G011710.1.CDS.1	CDS
CmoCh13G011710.1.CDS.2	CmoCh13G011710.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 9..62 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 9..52 score: 3.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 1..51 score: 8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 9..62 score: 2.2
None	No IPR available	unknown	Coil	Coil	coord: 41..68 scor
None	No IPR available	PANTHER	PTHR38546	FAMILY NOT NAMED	coord: 1..72 score: 4.3
None	No IPR available	PANTHER	PTHR38546:SF1	SUBFAMILY NOT NAMED	coord: 1..72 score: 4.3