Cp4.1LG20g00390 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g00390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor
LocationCp4.1LG20 : 153929 .. 156307 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTCACTCTTTCCCTCCCTCCTTCCACCCCTTTCTTTTCTTTGCTTCACTCATGGCTTCCTCCACATTACGCGACGACCAACTTCGAAATCTTCTCTCCAAATTGCAAACCTTGCTCCCTCAACTCAACCCTACGCTCCACACCTCCACCGTATATACCTCCACTCCTTTCTTAATAATCTTATAAGCGTTTTATTGAATTTAGTACTGCTTTAACCTATTACAAATGCTTGCAGGTATCAACGGCGGAGATTTTGAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTATTGACTTTGAAATGGTTAAACATCTTCTCAATTGAGAATGTTTAGTTAATAACGTTTCAAGTTCTCTTGTTCTTGAAGTTAAATCTTTCGACATGATTTTTCTCCCTCGCTGATTTGTACTATGAAACTGAGCTTCATCTTTGCATTACGAACCAACCGCTGAGAGAGAAAAGTGGTCGTTCTATGTTGTATCCACATATTTCTAGTTTTATGTGCTTTTTCTATATAATAGTGGAGGTGTATCTATTCTATTCTATGCAACAATTTTACCCCTCATTTTTTTTCCTTTAATTGAAAAGGTGATAAAAAGTGGTTAATTTTAAAATATTATATATTTTTATTCGAAATAAATAAAGCATAATTGAAAATTATTTAATGTCACTAATTTGTAGGTTTGATCGTGATAGGCTAAAAAATCATAAATATAATGTAACTAACAATTGTCACAGTCTCACATCTTTTCAAGTAAATACAAACAACAATCATCAATATTCAAAACACTAAAAGTTCCAAGTACCAACAAGAAAACAAATTTTTTTATTTAAAAAATAAAAAGAAAAATAGCGTATTGACATGATCCAACTTAATATTGATTTAGTGAAGTGGCATTTCAAATTTCTCAAGAATGACGTGGATATTAGCGACAATGGCCAAGCAGTTGCTCACGTATTCGTTGGACTTTCTCATCCTCGTCTTCACCTCCCGAAACGACGTCGAATCCATCTCCTCCAGTCCGTCCAAGCAACTCTGCTGGTCCGTCATCGCACTGCTCATCCACGTCTGAATGTTGCCGATCTTACTCTCCGTCAACGTCTTCTCGCCGGCGCCGGATTCCATTTCTGCTGTAGAGTCATTGACCAGGCTTATTGCGTCTTCGATTTGGCTCTCGCAGTCCTTCAAAGCTTCTCCTCCGCCGTTGGCGGTTAAGGTTTTCAGCGACCGTGACAGATTGGAGAGTTCGTTGAGGGAAACTTGGAGAGAGAGCTTCAAAATTAGTTCGGGATCGGGTTCAGGAGAGGAATTGAGAGAAATTATGGAGGTGAAGCAGGAATTAGGGTAACGAGTTACGTTGCAGACGATGTTGATTGCGTCGGCCGAATTGGGCGATTTCTTGCCGGTGGAGTTGTAGATGGAGGCTGCGATGATCAATCCGATGAGGAGAGTGGTCAGGACGAGGGCGGAGATGGCGATGGTGAGGCGGAGAGATTTGTGGTTGGGGATTTTGAAGTTTGGTTTGGACGGCGGCGGGAGCTGATCTTCGAGTTGGAGTTCGAGGTGAGTCACTTTGCCATAGCCTTTGAGGGCATTGATTTGATCCATGATTTCGGTTTTGAAAGAAAAAATGGAATTGATGCGTGTTTGTTTNATTTAAAAGGATTTGAAGGAGGGTAGTTAGTTTTATGAATAAAAATGAGTGGTTCGTTTTGTTTGGTTTTTTAGAAGAGGCATGGATCCAAAAGGACCTGTGGGCGGCAGTGGAACGACATAGGGGAAGAAGCTGCGTTCATTTGTCCCAGCAAAGCTGAGACCGTGGTGGAAGGGATCTTCTGGTGGAAACGACAGGTGTTGGTTTGTCGTAGGCGGATGGGCTTTGATTGTGGGCATTTCTACTGTTTGTGTGTAAGAGAATGGGCCAGCCCTGATTGCAACTTCTCAAACACACCCTCCCCTTTTTAAGCCCTCACTCTTTCCCTCCCTCCTTCCACCCCTTTCTTTTCTTTGCTTCACTCATGGCTTCCTCCACATTACGCGACGACCAACTTCGAAATCTTCTCTCCAAATTGCAAACCTTGCTCCCTCAACTCAACCCTACGCTCCACACCTCCACCGTATATACCTCCACTCCTTTCTTAATAATCTTATAAGCGTTTTATTGAATTTAGTACTGCTTTAACCTATTACAAATGCTTGCAGGTATCAACGGCGGAGATTTTGAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTATTGACTTTGAA

mRNA sequence

CCCTCACTCTTTCCCTCCCTCCTTCCACCCCTTTCTTTTCTTTGCTTCACTCATGGCTTCCTCCACATTACGCGACGACCAACTTCGAAATCTTCTCTCCAAATTGCAAACCTTGCTCCCTCAACTCAACCCTACGCTCCACACCTCCACCGTATCAACGGCGGAGATTTTGAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTATTGACTTTGAAATGTGGCATTTCAAATTTCTCAAGAATGACGTGGATATTAGCGACAATGGCCAAGCAGTTGCTCACGTATTCGTTGGACTTTCTCATCCTCGTCTTCACCTCCCGAAACGACGTCGAATCCATCTCCTCCAGTCCGTCCAAGCAACTCTGCTGGTCCGTCATCGCACTGCTCATCCACGTCTGAATGTTGCCGATCTTACTCTCCGTCAACGTCTTCTCGCCGGCGCCGGATTCCATTTCTGCTGTAGAGTCATTGACCAGGCTTATTGCGTCTTCGATTTGGCTCTCGCAGTCCTTCAAAGCTTCTCCTCCGCCGTTGGCGACGATGTTGATTGCGTCGGCCGAATTGGGCGATTTCTTGCCGGTGGAGTTGTAGATGGAGGCTGCGATGATCAATCCGATGAGGAGAGTGGTCAGGACGAGGGCGGAGATGGCGATGGTGAGGCGGAGAGATTTGTGGTTGGGGATTTTGAAGTTTGGTTTGGACGGCGGCGGGAGCTGATCTTCGAGTTGGAGTTCGAGAAGAGGCATGGATCCAAAAGGACCTGTGGGCGGCAGTGGAACGACATAGGGGAAGAAGCTGCGTTCATTTGTCCCAGCAAAGCTGAGACCGTGGTGGAAGGGATCTTCTGGTGGAAACGACAGGTATCAACGGCGGAGATTTTGAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTATTGACTTTGAA

Coding sequence (CDS)

ATGGCTTCCTCCACATTACGCGACGACCAACTTCGAAATCTTCTCTCCAAATTGCAAACCTTGCTCCCTCAACTCAACCCTACGCTCCACACCTCCACCGTATCAACGGCGGAGATTTTGAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTATTGACTTTGAAATGTGGCATTTCAAATTTCTCAAGAATGACGTGGATATTAGCGACAATGGCCAAGCAGTTGCTCACGTATTCGTTGGACTTTCTCATCCTCGTCTTCACCTCCCGAAACGACGTCGAATCCATCTCCTCCAGTCCGTCCAAGCAACTCTGCTGGTCCGTCATCGCACTGCTCATCCACGTCTGAATGTTGCCGATCTTACTCTCCGTCAACGTCTTCTCGCCGGCGCCGGATTCCATTTCTGCTGTAGAGTCATTGACCAGGCTTATTGCGTCTTCGATTTGGCTCTCGCAGTCCTTCAAAGCTTCTCCTCCGCCGTTGGCGACGATGTTGATTGCGTCGGCCGAATTGGGCGATTTCTTGCCGGTGGAGTTGTAGATGGAGGCTGCGATGATCAATCCGATGAGGAGAGTGGTCAGGACGAGGGCGGAGATGGCGATGGTGAGGCGGAGAGATTTGTGGTTGGGGATTTTGAAGTTTGGTTTGGACGGCGGCGGGAGCTGATCTTCGAGTTGGAGTTCGAGAAGAGGCATGGATCCAAAAGGACCTGTGGGCGGCAGTGGAACGACATAGGGGAAGAAGCTGCGTTCATTTGTCCCAGCAAAGCTGAGACCGTGGTGGAAGGGATCTTCTGGTGGAAACGACAGGTATCAACGGCGGAGATTTTGAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTATTGACTTTGAA

Protein sequence

MASSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMWHFKFLKNDVDISDNGQAVAHVFVGLSHPRLHLPKRRRIHLLQSVQATLLVRHRTAHPRLNVADLTLRQRLLAGAGFHFCCRVIDQAYCVFDLALAVLQSFSSAVGDDVDCVGRIGRFLAGGVVDGGCDDQSDEESGQDEGGDGDGEAERFVVGDFEVWFGRRRELIFELEFEKRHGSKRTCGRQWNDIGEEAAFICPSKAETVVEGIFWWKRQVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFE
Homology
[Close]
BLAST of Cp4.1LG20g00390 vs. Swiss-Prot
Match: PRE5_ARATH (Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-09
Identity = 32/69 (46.38%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 3  SSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLW 62
          +S + DDQ+ +L+SKL+  LP+++    +  VS +++L+ETC+YI+KL REVD+LS+RL 
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 63 KQLDSMGID 72
          + LDS+  D
Sbjct: 72 QLLDSVDED 80

[Close]
BLAST of Cp4.1LG20g00390 vs. Swiss-Prot
Match: PRE2_ARATH (Transcription factor PRE2 OS=Arabidopsis thaliana GN=PRE2 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-09
Identity = 29/67 (43.28%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 2  ASSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL 61
          +SS + DDQ+ +L+SKL+  +P++     ++TVS +++L+ETC+YI+ L +E DDLS+RL
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRL 71

Query: 62 WKQLDSM 69
           + L+S+
Sbjct: 72 TQLLESI 78

[Close]
BLAST of Cp4.1LG20g00390 vs. Swiss-Prot
Match: PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.2e-09
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 3  SSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL 62
          +S + +DQ+ +L+ KLQ LLP+L  +  +  VS A +L++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]
BLAST of Cp4.1LG20g00390 vs. Swiss-Prot
Match: PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-08
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 3  SSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLW 62
          SS + DDQ+ +L+SKLQ L+P+L     +  VS +++L+ETC+YI+ L REVDDLS+RL 
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRR-RSDKVSASKVLQETCNYIRNLHREVDDLSDRLS 73

Query: 63 KQLDS 68
          + L S
Sbjct: 74 ELLAS 77

[Close]
BLAST of Cp4.1LG20g00390 vs. Swiss-Prot
Match: ILI3_ORYSI (Transcription factor ILI3 OS=Oryza sativa subsp. indica GN=ILI3 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-08
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 6  LRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL 65
          + D+++  L+SKLQ LLP+ + +   S  S +++LKETC YIK L REVDDLS+RL + +
Sbjct: 14 ITDEEINELISKLQALLPESSRSRGASRSSASKLLKETCSYIKSLHREVDDLSDRLSELM 73

Query: 66 DSM 69
           +M
Sbjct: 74 STM 76

[Close]
BLAST of Cp4.1LG20g00390 vs. TrEMBL
Match: A0A0A0LQ05_CUCSA (DNA binding protein OS=Cucumis sativus GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.0e-23
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 1  MASSTLRDDQLRNLLSKLQTLLPQLNPTLHTST-VSTAEILKETCDYIKKLQREVDDLSE 60
          MASS L DD+L+NL+SKLQTLLPQLN   H S+ VS  EILKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGIDFEM 75
          RLWKQLDSMGIDFEM
Sbjct: 61 RLWKQLDSMGIDFEM 75

[Close]
BLAST of Cp4.1LG20g00390 vs. TrEMBL
Match: A0A059CYZ5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00466 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 46/99 (46.46%), Postives = 57/99 (57.58%), Query Frame = 1 

Query: 76  HFKFLKNDVDISDNGQAVAHVFVGLSHPRLHLPKRRRIHLLQSVQATLLVRHRTAHPRLN 135
           H + ++N   +S N QAVAH       P   L K RR HLLQ +QA  L+RH  AHPRL+
Sbjct: 4   HVELVENGAHLSTNRQAVAHELPRPGEPIPDLIKNRRPHLLQPLQARFLIRHGRAHPRLD 63

Query: 136 VADLTLRQRLLAGAGFHFCCRVIDQAYCVFDLALAVLQS 175
           VADL LRQ  L+    H   RV++ A  V  LA AV +S
Sbjct: 64  VADLELRQGHLSRPCVHGRHRVVELALRVLQLARAVPES 102

[Close]
BLAST of Cp4.1LG20g00390 vs. TrEMBL
Match: A0A0D2T8R1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G192000 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.8e-10
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 2  ASSTLRDDQLRNLLSKLQTLLPQLNPTLH-TSTVSTAEILKETCDYIKKLQREVDDLSER 61
          AS+ + DD+L  L+ +L TLLPQLN   H  ++ ST +ILKETC Y+++LQ+EVDDLSER
Sbjct: 4  ASNKITDDELNALILRLGTLLPQLNHGRHGRASSSTTKILKETCSYVRRLQKEVDDLSER 63

Query: 62 LWKQLDSMGI 71
          L + LDSM I
Sbjct: 64 LSQCLDSMDI 73

[Close]
BLAST of Cp4.1LG20g00390 vs. TrEMBL
Match: A0A0K9RZW5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_015990 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 4  STLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWK 63
          S + DDQ+++L+SKLQ LLP+L+       VS + +L+ETC+YIK L REVDDLSERL +
Sbjct: 15 SRITDDQIQDLVSKLQQLLPELHNARRPDKVSASRVLQETCNYIKSLHREVDDLSERLTQ 74

Query: 64 QLDS 68
           L++
Sbjct: 75 LLET 78

[Close]
BLAST of Cp4.1LG20g00390 vs. TrEMBL
Match: A0A164UJK8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_026040 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.7e-08
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 3  SSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLW 62
          ++ + DD+L+ L+ KLQ L+P  + +  T+ VS+++ILKETC+YIKKL +EVDDLS RL 
Sbjct: 8  ATRITDDELKELVLKLQALVPAESSSRSTTRVSSSKILKETCNYIKKLHKEVDDLSTRLT 67

Query: 63 KQLDSM 69
            LDSM
Sbjct: 68 YLLDSM 73

[Close]
BLAST of Cp4.1LG20g00390 vs. TAIR10
Match: AT3G28857.1 (AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-11
Identity = 32/69 (46.38%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 3  SSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLW 62
          +S + DDQ+ +L+SKL+  LP+++    +  VS +++L+ETC+YI+KL REVD+LS+RL 
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 63 KQLDSMGID 72
          + LDS+  D
Sbjct: 72 QLLDSVDED 80

[Close]
BLAST of Cp4.1LG20g00390 vs. TAIR10
Match: AT5G15160.1 (AT5G15160.1 BANQUO 2)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-10
Identity = 29/67 (43.28%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 2  ASSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL 61
          +SS + DDQ+ +L+SKL+  +P++     ++TVS +++L+ETC+YI+ L +E DDLS+RL
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRL 71

Query: 62 WKQLDSM 69
           + L+S+
Sbjct: 72 TQLLESI 78

[Close]
BLAST of Cp4.1LG20g00390 vs. TAIR10
Match: AT1G74500.1 (AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-10
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 3  SSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL 62
          +S + +DQ+ +L+ KLQ LLP+L  +  +  VS A +L++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]
BLAST of Cp4.1LG20g00390 vs. TAIR10
Match: AT1G26945.1 (AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-09
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 3  SSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLW 62
          SS + DDQ+ +L+SKLQ L+P+L     +  VS +++L+ETC+YI+ L REVDDLS+RL 
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRR-RSDKVSASKVLQETCNYIRNLHREVDDLSDRLS 73

Query: 63 KQLDS 68
          + L S
Sbjct: 74 ELLAS 77

[Close]
BLAST of Cp4.1LG20g00390 vs. TAIR10
Match: AT3G47710.1 (AT3G47710.1 BANQUO 3)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 3  SSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLW 62
          +S + D+Q+ +L+ +L  LLP+L     +  VS + +L+ETC YI+ L +EVDDLSERL 
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLS 72

Query: 63 KQLDS 68
          + L+S
Sbjct: 73 QLLES 77

[Close]
BLAST of Cp4.1LG20g00390 vs. NCBI nr
Match: gi|778656795|ref|XP_011649678.1| (PREDICTED: transcription factor PRE5-like [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 1  MASSTLRDDQLRNLLSKLQTLLPQLNPTLHTST-VSTAEILKETCDYIKKLQREVDDLSE 60
          MASS L DD+L+NL+SKLQTLLPQLN   H S+ VS  EILKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGIDFEM 75
          RLWKQLDSMGIDFEM
Sbjct: 61 RLWKQLDSMGIDFEM 75

[Close]
BLAST of Cp4.1LG20g00390 vs. NCBI nr
Match: gi|659066348|ref|XP_008440200.1| (PREDICTED: transcription factor PRE5-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 57/75 (76.00%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 1  MASSTLRDDQLRNLLSKLQTLLPQLNPTL-HTSTVSTAEILKETCDYIKKLQREVDDLSE 60
          MASS L D++L+NL+SKL+TLLPQLN    ++S  ST EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGIDFEM 75
          RLWKQLDSMG+DFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]
BLAST of Cp4.1LG20g00390 vs. NCBI nr
Match: gi|629119082|gb|KCW83572.1| (hypothetical protein EUGRSUZ_B00466 [Eucalyptus grandis])

HSP 1 Score: 74.7 bits (182), Expect = 3.3e-10
Identity = 46/99 (46.46%), Postives = 57/99 (57.58%), Query Frame = 1 

Query: 76  HFKFLKNDVDISDNGQAVAHVFVGLSHPRLHLPKRRRIHLLQSVQATLLVRHRTAHPRLN 135
           H + ++N   +S N QAVAH       P   L K RR HLLQ +QA  L+RH  AHPRL+
Sbjct: 4   HVELVENGAHLSTNRQAVAHELPRPGEPIPDLIKNRRPHLLQPLQARFLIRHGRAHPRLD 63

Query: 136 VADLTLRQRLLAGAGFHFCCRVIDQAYCVFDLALAVLQS 175
           VADL LRQ  L+    H   RV++ A  V  LA AV +S
Sbjct: 64  VADLELRQGHLSRPCVHGRHRVVELALRVLQLARAVPES 102

[Close]
BLAST of Cp4.1LG20g00390 vs. NCBI nr
Match: gi|823202095|ref|XP_012435732.1| (PREDICTED: transcription factor ILI3-like [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 2  ASSTLRDDQLRNLLSKLQTLLPQLNPTLH-TSTVSTAEILKETCDYIKKLQREVDDLSER 61
          AS+ + DD+L  L+ +L TLLPQLN   H  ++ ST +ILKETC Y+++LQ+EVDDLSER
Sbjct: 4  ASNKITDDELNALILRLGTLLPQLNHGRHGRASSSTTKILKETCSYVRRLQKEVDDLSER 63

Query: 62 LWKQLDSMGI 71
          L + LDSM I
Sbjct: 64 LSQCLDSMDI 73

[Close]
BLAST of Cp4.1LG20g00390 vs. NCBI nr
Match: gi|729389873|ref|XP_010551862.1| (PREDICTED: transcription factor PRE1-like [Tarenaya hassleriana])

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 33/70 (47.14%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 2  ASSTLRDDQLRNLLSKLQTLLPQLNPTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL 61
          ++S + DDQ+ +L+SKL+ LLP++ P   +  VS +++L+ETC+YI+ L REVDDLSERL
Sbjct: 10 SASRISDDQIIDLVSKLRQLLPEIRPNRRSDKVSASKVLQETCNYIRNLNREVDDLSERL 69

Query: 62 WKQLDSMGID 72
           + L+++  D
Sbjct: 70 SQLLETIDAD 79

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g00390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRE5_ARATH1.7e-0946.38Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1[more]
PRE2_ARATH2.8e-0943.28Transcription factor PRE2 OS=Arabidopsis thaliana GN=PRE2 PE=1 SV=1[more]
PRE3_ARATH8.2e-0950.85Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1[more]
PRE6_ARATH3.1e-0850.77Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1[more]
ILI3_ORYSI3.1e-0847.62Transcription factor ILI3 OS=Oryza sativa subsp. indica GN=ILI3 PE=3 SV=1[more]
BLAST of Cp4.1LG20g00390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ05_CUCSA7.0e-2382.67DNA binding protein OS=Cucumis sativus GN=Csa_1G032990 PE=4 SV=1[more]
A0A059CYZ5_EUCGR2.3e-1046.46Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00466 PE=4 SV=1[more]
A0A0D2T8R1_GOSRA8.8e-1057.14Uncharacterized protein OS=Gossypium raimondii GN=B456_008G192000 PE=4 SV=1[more]
A0A0K9RZW5_SPIOL2.8e-0853.13Uncharacterized protein OS=Spinacia oleracea GN=SOVF_015990 PE=4 SV=1[more]
A0A164UJK8_DAUCA3.7e-0853.03Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_026040 PE=4 SV=1[more]
BLAST of Cp4.1LG20g00390 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G28857.19.3e-1146.38 basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT5G15160.11.6e-1043.28 BANQUO 2[more]
AT1G74500.14.6e-1050.85 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1[more]
AT1G26945.11.8e-0950.77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G47710.11.1e-0844.62 BANQUO 3[more]
BLAST of Cp4.1LG20g00390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778656795|ref|XP_011649678.1|1.0e-2282.67PREDICTED: transcription factor PRE5-like [Cucumis sativus][more]
gi|659066348|ref|XP_008440200.1|2.1e-2076.00PREDICTED: transcription factor PRE5-like [Cucumis melo][more]
gi|629119082|gb|KCW83572.1|3.3e-1046.46hypothetical protein EUGRSUZ_B00466 [Eucalyptus grandis][more]
gi|823202095|ref|XP_012435732.1|1.3e-0957.14PREDICTED: transcription factor ILI3-like [Gossypium raimondii][more]
gi|729389873|ref|XP_010551862.1|1.4e-0847.14PREDICTED: transcription factor PRE1-like [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g00390.1Cp4.1LG20g00390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 286..315
score: 2.5E-5coord: 7..61
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 9..51
score: 9.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 1..56
score: 2.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 1..50
score: 10
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 286..316
score: 4.71E-5coord: 7..61
score: 1.3
NoneNo IPR availableunknownCoilCoilcoord: 295..322
score: -coord: 40..67
scor
NoneNo IPR availablePANTHERPTHR38546FAMILY NOT NAMEDcoord: 1..71
score: 1.0
NoneNo IPR availablePANTHERPTHR38546:SF1SUBFAMILY NOT NAMEDcoord: 1..71
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g00390Cucsa.112580Cucumber (Gy14) v1cgycpeB0259
Cp4.1LG20g00390CmaCh13G011190Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g00390CmoCh01G008160Cucurbita moschata (Rifu)cmocpeB444
Cp4.1LG20g00390CmoCh13G011710Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g00390Cla018626Watermelon (97103) v1cpewmB522
Cp4.1LG20g00390Csa1G032990Cucumber (Chinese Long) v2cpecuB517
Cp4.1LG20g00390MELO3C001968Melon (DHL92) v3.5.1cpemeB471
Cp4.1LG20g00390ClCG04G012420Watermelon (Charleston Gray)cpewcgB470
Cp4.1LG20g00390CSPI01G05420Wild cucumber (PI 183967)cpecpiB519
Cp4.1LG20g00390Lsi02G000560Bottle gourd (USVL1VR-Ls)cpelsiB424
Cp4.1LG20g00390MELO3C001968.2Melon (DHL92) v3.6.1cpemedB553
Cp4.1LG20g00390CsaV3_1G002240Cucumber (Chinese Long) v3cpecucB0643
Cp4.1LG20g00390CsaV3_1G005290Cucumber (Chinese Long) v3cpecucB0636
Cp4.1LG20g00390Bhi08G001637Wax gourdcpewgoB0653
Cp4.1LG20g00390CsGy1G005170Cucumber (Gy14) v2cgybcpeB081
Cp4.1LG20g00390Carg04718Silver-seed gourdcarcpeB0544
Cp4.1LG20g00390Carg21662Silver-seed gourdcarcpeB0072
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g00390Cp4.1LG02g10170Cucurbita pepo (Zucchini)cpecpeB431
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g00390Cucumber (Chinese Long) v3cpecucB0649
Cp4.1LG20g00390Wax gourdcpewgoB0662
Cp4.1LG20g00390Cucurbita pepo (Zucchini)cpecpeB433
Cp4.1LG20g00390Cucurbita pepo (Zucchini)cpecpeB442
Cp4.1LG20g00390Cucumber (Gy14) v1cgycpeB0758
Cp4.1LG20g00390Cucurbita maxima (Rimu)cmacpeB441
Cp4.1LG20g00390Cucurbita maxima (Rimu)cmacpeB484
Cp4.1LG20g00390Cucurbita maxima (Rimu)cmacpeB485
Cp4.1LG20g00390Wild cucumber (PI 183967)cpecpiB526
Cp4.1LG20g00390Cucumber (Chinese Long) v2cpecuB524
Cp4.1LG20g00390Bottle gourd (USVL1VR-Ls)cpelsiB430
Cp4.1LG20g00390Watermelon (Charleston Gray)cpewcgB473
Cp4.1LG20g00390Watermelon (97103) v1cpewmB511
Cp4.1LG20g00390Cucumber (Gy14) v2cgybcpeB671
Cp4.1LG20g00390Silver-seed gourdcarcpeB0149