CmoCh13G010950 (gene) Cucurbita moschata (Rifu)

NameCmoCh13G010950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(BZIP DNA-binding protein-like) (Basic leucine-zipper 3)
LocationCmo_Chr13 : 9020931 .. 9021430 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTAATGGATGAAGATTTGGGGTTTGGTGAATACCCATTTAATGAGTTGAAGATGATGATGAGAAGAGAAGGCGATGAGGAAGATGAATCAAACGGTTCATGTGGTTTCCATAGAGAAATATTGTTCCCTTCGATGAACACTAATTGTAGTAATGTGTTCTCCTCTCCCAATTCCGCGTCGTGCGATACCGTTCTCGATCCGCATCGCCATCACCATCTTAGCGTGATGGCGGAGCGGAAGCTGAGAAGAATGATATCGAATCGGGAGTCGGCAAGGAGGTCGAGGATGAGGAAGAAGAAGCAGATCGAGGAGTTGCAATACCAGGCAAGATCGTTTGTTTCTTTGTTTGATTGATTGATTGATATTTTTCGATATTGTTGCGAGAAATTTTCAGACTTTGTTCGGTCTCAGGTCGGGCAGTTGGAAGGTTCGAACCGTCAGCTGTCGGAGAAGCTGATTCAGCTGCTGGAATGCAACCAGCAGATCCTGCATGA

mRNA sequence

ATGTGTGTAATGGATGAAGATTTGGGGTTTGGTGAATACCCATTTAATGAGTTGAAGATGATGATGAGAAGAGAAGGCGATGAGGAAGATGAATCAAACGGTTCATGTGGTTTCCATAGAGAAATATTGTTCCCTTCGATGAACACTAATTGTAGTAATGTGTTCTCCTCTCCCAATTCCGCGTCGTGCGATACCGTTCTCGATCCGCATCGCCATCACCATCTTAGCGTGATGGCGGAGCGGAAGCTGAGAAGAATGATATCGAATCGGGAGTCGGCAAGGAGGTCGAGGATGAGGAAGAAGAAGCAGATCGAGGAGTTGCAATACCAGGCAAGATCACTTTGTTCGGTCTCAGGTCGGGCAGTTGGAAGGTTCGAACCGTCAGCTGTCGGAGAAGCTGATTCAGCTGCTGGAATGCAACCAGCAGATCCTGCATGA

Coding sequence (CDS)

ATGTGTGTAATGGATGAAGATTTGGGGTTTGGTGAATACCCATTTAATGAGTTGAAGATGATGATGAGAAGAGAAGGCGATGAGGAAGATGAATCAAACGGTTCATGTGGTTTCCATAGAGAAATATTGTTCCCTTCGATGAACACTAATTGTAGTAATGTGTTCTCCTCTCCCAATTCCGCGTCGTGCGATACCGTTCTCGATCCGCATCGCCATCACCATCTTAGCGTGATGGCGGAGCGGAAGCTGAGAAGAATGATATCGAATCGGGAGTCGGCAAGGAGGTCGAGGATGAGGAAGAAGAAGCAGATCGAGGAGTTGCAATACCAGGCAAGATCACTTTGTTCGGTCTCAGGTCGGGCAGTTGGAAGGTTCGAACCGTCAGCTGTCGGAGAAGCTGATTCAGCTGCTGGAATGCAACCAGCAGATCCTGCATGA
BLAST of CmoCh13G010950 vs. TrEMBL
Match: A0A0A0LTK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040010 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 98/182 (53.85%), Postives = 108/182 (59.34%), Query Frame = 1

Query: 4   MDEDLGFGEYPFN----------------ELKMMMRREGDEED----ESNGSCG--FHRE 63
           M+EDLGFGE PFN                   MM R EGD  D    ESNGSCG   HRE
Sbjct: 3   MNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIHRE 62

Query: 64  ILFPSM---------NTNCSNVFSSPNSASCDT---------VLDPHRHHHLSVMAERKL 123
           I+FPS          N N SNVFSSPNSASC +         VLD HRHHHL+VMAERKL
Sbjct: 63  IVFPSTMITTSHTPTNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMAERKL 122

Query: 124 RRMISNRESARRSRMRKKKQIEELQYQARSLCSVSGRAVGRFEPSAVGEADSAAGMQPAD 146
           RRMISNRESARRSRMRKKKQIEELQ             VG F+ + + E D++ GMQP +
Sbjct: 123 RRMISNRESARRSRMRKKKQIEELQ------------TVGGFKSTIIREVDTSGGMQPTN 172

BLAST of CmoCh13G010950 vs. TrEMBL
Match: B9IE26_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s03580g PE=4 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1

Query: 57  SPN--SASCDTVLDPHRHHHLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQARSL 115
           SPN  S S D+ L   R   L +  E+KLRRMISNRESARRSRMR+KKQIE+LQY+   L
Sbjct: 45  SPNTSSVSTDSTLAEPRDQQLGISNEKKLRRMISNRESARRSRMRRKKQIEDLQYRVNQL 104

BLAST of CmoCh13G010950 vs. TrEMBL
Match: A0A059A5T3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02632 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-06
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query: 46  SMNTNCSNVFSSPNSASCDTVLDPHRHHHLSVMAERKLRRMISNRESARRSRMRKKKQIE 105
           S+N++  N  ++ + AS D +   H  H  + + ER+LRRMISNRESARRSR+RKKKQIE
Sbjct: 12  SLNSSPCNNSTTFDDASKDQIHPYHFDHVSNAIHERRLRRMISNRESARRSRLRKKKQIE 71

Query: 106 ELQYQARSL 115
           ELQ Q   L
Sbjct: 72  ELQMQVNQL 80

BLAST of CmoCh13G010950 vs. TrEMBL
Match: A0A067K596_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11777 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.6e-06
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1

Query: 57  SPNSA--SCDTVLDPHRHHHLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQARSL 115
           SPN++  S ++ L+    H + +  ER+L+RMISNRESARRSRMRKKKQIEELQ Q   L
Sbjct: 72  SPNTSPLSANSTLNETSDHQMGISHERRLKRMISNRESARRSRMRKKKQIEELQCQVNHL 131

BLAST of CmoCh13G010950 vs. TrEMBL
Match: A0A061FXG4_THECC (Basic leucine-zipper 70, putative OS=Theobroma cacao GN=TCM_014407 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-06
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 1

Query: 24  REGDEEDESNGSCGFHREILFPSMNTNCSNVFSSPNSASCDTVLDPHRHHHLSVMAERKL 83
           + G+     + S  F    L P+   +      SPNS+S  T  D  R +  S++ +++L
Sbjct: 51  QHGNSSQHPDSSTNFSSR-LSPNSQVHFPFHLFSPNSSSLSTE-DEGREYQPSIVDDKRL 110

Query: 84  RRMISNRESARRSRMRKKKQIEELQYQARSLCSVS 119
           RRMISNRESARRSRMRKK+QIEELQ Q   L +++
Sbjct: 111 RRMISNRESARRSRMRKKQQIEELQSQVDQLQTIN 143

BLAST of CmoCh13G010950 vs. TAIR10
Match: AT5G60830.1 (AT5G60830.1 basic leucine-zipper 70)

HSP 1 Score: 50.8 bits (120), Expect = 8.0e-07
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 1

Query: 52  SNVFSSPNSASCDTVLDPHR----HHHLSVMAERKLRRMISNRESARRSRMRKKKQIEEL 111
           SNV +  N+ S    LDP+     H+      ER+ RRM+SNRESARRSRMRKKKQIEEL
Sbjct: 41  SNVSTRINNQSH---LDPNAENIFHNEGLAPEERRARRMVSNRESARRSRMRKKKQIEEL 100

Query: 112 QYQARSL 115
           Q Q   L
Sbjct: 101 QQQVEQL 104

BLAST of CmoCh13G010950 vs. TAIR10
Match: AT2G04038.1 (AT2G04038.1 basic leucine-zipper 48)

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1

Query: 46  SMNTNCSNVFSSPNSASCDTVLDPHRHHHLSVMAERKLRRMISNRESARRSRMRKKKQIE 105
           S ++N  ++  S NS S     D   H  + V+ ERK RRM+SNRESARRSRMRK++ ++
Sbjct: 44  SSSSNSQDLMISNNSTS-----DEDHHQSIMVLDERKQRRMLSNRESARRSRMRKQRHLD 103

Query: 106 ELQYQ 111
           EL  Q
Sbjct: 104 ELWSQ 103

BLAST of CmoCh13G010950 vs. NCBI nr
Match: gi|700208991|gb|KGN64087.1| (hypothetical protein Csa_1G040010 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-31
Identity = 98/182 (53.85%), Postives = 108/182 (59.34%), Query Frame = 1

Query: 4   MDEDLGFGEYPFN----------------ELKMMMRREGDEED----ESNGSCG--FHRE 63
           M+EDLGFGE PFN                   MM R EGD  D    ESNGSCG   HRE
Sbjct: 3   MNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIHRE 62

Query: 64  ILFPSM---------NTNCSNVFSSPNSASCDT---------VLDPHRHHHLSVMAERKL 123
           I+FPS          N N SNVFSSPNSASC +         VLD HRHHHL+VMAERKL
Sbjct: 63  IVFPSTMITTSHTPTNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMAERKL 122

Query: 124 RRMISNRESARRSRMRKKKQIEELQYQARSLCSVSGRAVGRFEPSAVGEADSAAGMQPAD 146
           RRMISNRESARRSRMRKKKQIEELQ             VG F+ + + E D++ GMQP +
Sbjct: 123 RRMISNRESARRSRMRKKKQIEELQ------------TVGGFKSTIIREVDTSGGMQPTN 172

BLAST of CmoCh13G010950 vs. NCBI nr
Match: gi|659066657|ref|XP_008454802.1| (PREDICTED: light-inducible protein CPRF3-like [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 4.9e-30
Identity = 95/157 (60.51%), Postives = 101/157 (64.33%), Query Frame = 1

Query: 4   MDEDLGFGEYPFN-------------ELKMMMRR-EGD-----EEDESNGSCG-FHREIL 63
           M+EDLGFGE PFN             E   MMRR EGD     E+ ESNGSCG FHREI+
Sbjct: 3   MNEDLGFGENPFNGSLKRHCSSHLMMETNRMMRRSEGDTNNDHEDHESNGSCGNFHREIV 62

Query: 64  FPSM-----------NTNCSNVFSSPNSASCDT---------VLDPHRHHHLSVMAERKL 121
           FP+            N N SNVFSSPNSASC +         VLD HRHHHL+VMAERKL
Sbjct: 63  FPATMITTSQTPTNNNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMAERKL 122

BLAST of CmoCh13G010950 vs. NCBI nr
Match: gi|449439673|ref|XP_004137610.1| (PREDICTED: basic leucine zipper 43-like [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 93/157 (59.24%), Postives = 97/157 (61.78%), Query Frame = 1

Query: 4   MDEDLGFGEYPFN----------------ELKMMMRREGDEED----ESNGSCG--FHRE 63
           M+EDLGFGE PFN                   MM R EGD  D    ESNGSCG   HRE
Sbjct: 3   MNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIHRE 62

Query: 64  ILFPSM---------NTNCSNVFSSPNSASCDT---------VLDPHRHHHLSVMAERKL 121
           I+FPS          N N SNVFSSPNSASC +         VLD HRHHHL+VMAERKL
Sbjct: 63  IVFPSTMITTSHTPTNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMAERKL 122

BLAST of CmoCh13G010950 vs. NCBI nr
Match: gi|743932155|ref|XP_011010367.1| (PREDICTED: basic leucine zipper 10-like [Populus euphratica])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1

Query: 57  SPN--SASCDTVLDPHRHHHLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQARSL 115
           SPN  S S D+ L   R   L +  E+KLRRMISNRESARRSRMR+KKQIE+LQY+   L
Sbjct: 85  SPNTSSVSTDSTLAEPRDQQLGISNEKKLRRMISNRESARRSRMRRKKQIEDLQYRVNQL 144

BLAST of CmoCh13G010950 vs. NCBI nr
Match: gi|566205655|ref|XP_002321470.2| (hypothetical protein POPTR_0015s03580g, partial [Populus trichocarpa])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1

Query: 57  SPN--SASCDTVLDPHRHHHLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQARSL 115
           SPN  S S D+ L   R   L +  E+KLRRMISNRESARRSRMR+KKQIE+LQY+   L
Sbjct: 45  SPNTSSVSTDSTLAEPRDQQLGISNEKKLRRMISNRESARRSRMRRKKQIEDLQYRVNQL 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTK4_CUCSA1.1e-3153.85Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040010 PE=4 SV=1[more]
B9IE26_POPTR1.5e-0661.67Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s03580g P... [more]
A0A059A5T3_EUCGR5.8e-0653.62Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02632 PE=4 SV=1[more]
A0A067K596_JATCU7.6e-0658.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11777 PE=4 SV=1[more]
A0A061FXG4_THECC9.9e-0643.16Basic leucine-zipper 70, putative OS=Theobroma cacao GN=TCM_014407 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G60830.18.0e-0755.22 basic leucine-zipper 70[more]
AT2G04038.15.2e-0647.69 basic leucine-zipper 48[more]
Match NameE-valueIdentityDescription
gi|700208991|gb|KGN64087.1|1.5e-3153.85hypothetical protein Csa_1G040010 [Cucumis sativus][more]
gi|659066657|ref|XP_008454802.1|4.9e-3060.51PREDICTED: light-inducible protein CPRF3-like [Cucumis melo][more]
gi|449439673|ref|XP_004137610.1|1.9e-2959.24PREDICTED: basic leucine zipper 43-like [Cucumis sativus][more]
gi|743932155|ref|XP_011010367.1|2.2e-0661.67PREDICTED: basic leucine zipper 10-like [Populus euphratica][more]
gi|566205655|ref|XP_002321470.2|2.2e-0661.67hypothetical protein POPTR_0015s03580g, partial [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G010950.1CmoCh13G010950.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004827Basic-leucine zipper domainPFAMPF00170bZIP_1coord: 81..114
score: 1.
IPR004827Basic-leucine zipper domainSMARTSM00338brlzneucoord: 77..143
score: 0
IPR004827Basic-leucine zipper domainPROSITEPS00036BZIP_BASICcoord: 84..99
scor
IPR004827Basic-leucine zipper domainPROFILEPS50217BZIPcoord: 79..114
score:
NoneNo IPR availableunknownCoilCoilcoord: 90..110
scor
NoneNo IPR availableGENE3DG3DSA:1.20.5.170coord: 80..114
score: 3.
NoneNo IPR availablePANTHERPTHR22952CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATEDcoord: 57..114
score: 1.6
NoneNo IPR availablePANTHERPTHR22952:SF214BASIC LEUCINE-ZIPPER 70-RELATEDcoord: 57..114
score: 1.6
NoneNo IPR availableunknownSSF57959Leucine zipper domaincoord: 81..115
score: 1.1

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G010950Cucurbita maxima (Rimu)cmacmoB397
CmoCh13G010950Cucurbita maxima (Rimu)cmacmoB399
CmoCh13G010950Cucurbita maxima (Rimu)cmacmoB082
CmoCh13G010950Cucurbita maxima (Rimu)cmacmoB125
CmoCh13G010950Wild cucumber (PI 183967)cmocpiB203
CmoCh13G010950Cucumber (Chinese Long) v2cmocuB201
CmoCh13G010950Cucumber (Chinese Long) v2cmocuB207
CmoCh13G010950Cucumber (Chinese Long) v2cmocuB210
CmoCh13G010950Melon (DHL92) v3.5.1cmomeB191
CmoCh13G010950Watermelon (Charleston Gray)cmowcgB195
CmoCh13G010950Watermelon (97103) v1cmowmB202
CmoCh13G010950Cucurbita pepo (Zucchini)cmocpeB183
CmoCh13G010950Cucurbita pepo (Zucchini)cmocpeB196
CmoCh13G010950Cucurbita pepo (Zucchini)cmocpeB201
CmoCh13G010950Cucurbita pepo (Zucchini)cmocpeB212
CmoCh13G010950Bottle gourd (USVL1VR-Ls)cmolsiB206
CmoCh13G010950Cucumber (Gy14) v2cgybcmoB066
CmoCh13G010950Melon (DHL92) v3.6.1cmomedB213
CmoCh13G010950Silver-seed gourdcarcmoB0626
CmoCh13G010950Silver-seed gourdcarcmoB0698
CmoCh13G010950Silver-seed gourdcarcmoB0810
CmoCh13G010950Cucumber (Chinese Long) v3cmocucB0242
CmoCh13G010950Cucumber (Chinese Long) v3cmocucB0230
CmoCh13G010950Cucumber (Chinese Long) v3cmocucB0238
CmoCh13G010950Watermelon (97103) v2cmowmbB222
CmoCh13G010950Wax gourdcmowgoB0275
CmoCh13G010950Cucurbita moschata (Rifu)cmocmoB052
CmoCh13G010950Cucurbita moschata (Rifu)cmocmoB089
CmoCh13G010950Cucurbita moschata (Rifu)cmocmoB169
CmoCh13G010950Cucurbita moschata (Rifu)cmocmoB171
CmoCh13G010950Cucumber (Gy14) v1cgycmoB0584
CmoCh13G010950Cucumber (Gy14) v1cgycmoB0585