ClCG04G011500 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G011500
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Basic leucine-zipper 70
Location	CG_Chr04 : 26515331 .. 26516078 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAATGAAGATTTGGGATTTGGTGAAAATCCATTTAATGGAAGCTTGAAAAGGCATTGTTCTTCACATTTGATCATGGAAACAAATAGGATGATGAGAAGAGAAGGTGATGATCATGAAGATGAATCAAATGGTTGTTGTGGTTTCCATAGAGAAATATTGTTCCCTACTATGATCACTACTACTGGCCAAGCCCCAACCACCACCAACAACAACAATTGTAATGTCTTCTCTCCCAATTCCGCTTCTTGCTATAGCAACGACAACATTTTGGACGTCGTTGAAGTTCTCGACATCCATCGTCATCACCATCTGACTGTAATGGCCGAGAGGAAGCTAAGAAGAATGATATCAAATCGAGAATCCGCAAGGAGGTCACGAATGAGAAAGAAGAAGCAGATCGAAGAGTTACAATACCAGGCAAGATTTTCAAATATATATCTACCTTAATTCTTTTGTTATAAGATGTTGTAAATTCAAATATACACATGTCGATGAAAATTTAATATGTTCTAACTGTCAGGTGGGACAATTGGAAGTTTCGAACCGGCAATTGTCGGAAAAGCTAATACAAGTGGTGGAATGCAACCAACAAATCTTGCATGAGAATGCAGAGCTAAAGCGAAAGGTTTCATCACTTCAAATTATTCTAACTGATTTCTTGAAGCCATTGAGAAATTGTGAAGATGCTTTTGGGAACTCCATTATTAATAATCGAAGAGCTGAACCAAATTCCTCCTAG

mRNA sequence

ATGGAGATGAATGAAGATTTGGGATTTGGTGAAAATCCATTTAATGGAAGCTTGAAAAGGCATTGTTCTTCACATTTGATCATGGAAACAAATAGGATGATGAGAAGAGAAGGTGATGATCATGAAGATGAATCAAATGGTTGTTGTGGTTTCCATAGAGAAATATTGTTCCCTACTATGATCACTACTACTGGCCAAGCCCCAACCACCACCAACAACAACAATTGTAATGTCTTCTCTCCCAATTCCGCTTCTTGCTATAGCAACGACAACATTTTGGACGTCGTTGAAGTTCTCGACATCCATCGTCATCACCATCTGACTGTGGGACAATTGGAAGTTTCGAACCGGCAATTGTCGGAAAAGCTAATACAAGTGGTGGAATGCAACCAACAAATCTTGCATGAGAATGCAGAGCTAAAGCGAAAGGTTTCATCACTTCAAATTATTCTAACTGATTTCTTGAAGCCATTGAGAAATTGTGAAGATGCTTTTGGGAACTCCATTATTAATAATCGAAGAGCTGAACCAAATTCCTCCTAG

Coding sequence (CDS)

ATGGAGATGAATGAAGATTTGGGATTTGGTGAAAATCCATTTAATGGAAGCTTGAAAAGGCATTGTTCTTCACATTTGATCATGGAAACAAATAGGATGATGAGAAGAGAAGGTGATGATCATGAAGATGAATCAAATGGTTGTTGTGGTTTCCATAGAGAAATATTGTTCCCTACTATGATCACTACTACTGGCCAAGCCCCAACCACCACCAACAACAACAATTGTAATGTCTTCTCTCCCAATTCCGCTTCTTGCTATAGCAACGACAACATTTTGGACGTCGTTGAAGTTCTCGACATCCATCGTCATCACCATCTGACTGTGGGACAATTGGAAGTTTCGAACCGGCAATTGTCGGAAAAGCTAATACAAGTGGTGGAATGCAACCAACAAATCTTGCATGAGAATGCAGAGCTAAAGCGAAAGGTTTCATCACTTCAAATTATTCTAACTGATTTCTTGAAGCCATTGAGAAATTGTGAAGATGCTTTTGGGAACTCCATTATTAATAATCGAAGAGCTGAACCAAATTCCTCCTAG

Protein sequence

MEMNEDLGFGENPFNGSLKRHCSSHLIMETNRMMRREGDDHEDESNGCCGFHREILFPTMITTTGQAPTTTNNNNCNVFSPNSASCYSNDNILDVVEVLDIHRHHHLTVGQLEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQIILTDFLKPLRNCEDAFGNSIINNRRAEPNSS

Homology

[Close]

BLAST of ClCG04G011500 vs. TrEMBL
Match: A0A0A0LTK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040010 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39
Identity = 98/159 (61.64%), Postives = 112/159 (70.44%), Query Frame = 1


Query: 1   MEMNEDLGFGENPFNGS-LKRHCSSHLIMETNR-MMRR-EGD--DHED-ESNGCCG--FH 60
           MEMNEDLGFGENPFNGS LKRHCSSHL+METNR MMRR EGD  DHED ESNG CG   H
Sbjct: 1   MEMNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIH 60

Query: 61  REILFPTMITTTGQAPTTTNNNNCNVFS-PNSASCYSNDNILDVVEVLDIHRHHHLTVGQ 120
           REI+FP+ + TT   PT  NNNN NVFS PNSASCYSNDN+LDVVEVLD+HRHHHLTV  
Sbjct: 61  REIVFPSTMITTSHTPT--NNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTV-- 120

Query: 121 LEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQII 151
                     KL +++   +         K+++  LQ +
Sbjct: 121 ------MAERKLRRMISNRESARRSRMRKKKQIEELQTV 149

[Close]

BLAST of ClCG04G011500 vs. TrEMBL
Match: W9QY74_9ROSA (G-box-binding factor 1 OS=Morus notabilis GN=L484_012664 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 109 VGQLEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQIILTDFLKPLRN 161
           VGQL+ +NRQLSEKLIQ+++CNQQIL EN++LK KVSSLQIIL+D L PLRN
Sbjct: 133 VGQLQTTNRQLSEKLIQLLDCNQQILQENSQLKEKVSSLQIILSDLLVPLRN 184

[Close]

BLAST of ClCG04G011500 vs. TrEMBL
Match: M5WVR4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012281mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.8e-12
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 109 VGQLEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQIILTDFLKPLRNCEDAFGNS 168
           V QL  +NRQLSEKLIQ++E NQQIL ENA+LK +VSSLQI+L D + PLRN  D    +
Sbjct: 103 VDQLHATNRQLSEKLIQLLEGNQQILQENAQLKERVSSLQILLADLITPLRNVGDVITTT 162

Query: 169 IINNR-RAEPNSS 181
              NR RAE +S+
Sbjct: 163 TNGNRLRAEDSST 175

[Close]

BLAST of ClCG04G011500 vs. TrEMBL
Match: B9IE26_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s03580g PE=4 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 109 VGQLEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQIILTDFLKPLRNCEDAFGNS 168
           V QL+  N QLSEK+I ++E N Q L EN++LK KVSSLQ++L+D L PLRN +D   NS
Sbjct: 101 VNQLQNMNHQLSEKVIHLLESNHQTLQENSQLKEKVSSLQVVLSDLLTPLRNVDDGDCNS 160

Query: 169 I 170
           I
Sbjct: 161 I 161

[Close]

BLAST of ClCG04G011500 vs. TrEMBL
Match: A0A067K596_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11777 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 109 VGQLEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQIILTDFLKPLRNCEDAFGNS 168
           V  L+  N QLSEK+I ++E N QIL EN++LK KVSSLQI+L+D L P+RN E++  N+
Sbjct: 128 VNHLQTMNHQLSEKVIHLLESNHQILEENSQLKEKVSSLQIVLSDLLTPMRNIEESICNT 187

Query: 169 IINNRRAEPNS 180
             N+ R E ++
Sbjct: 188 --NHLRREASN 196

[Close]

BLAST of ClCG04G011500 vs. TAIR10
Match: AT5G60830.1 (AT5G60830.1 basic leucine-zipper 70)

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 109 VGQLEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQIILTDFLKPLRNCEDAFGNS 168
           V QL + N  LSEK+I ++E N QIL EN++LK KVSS  +++ D L P+RN E    + 
Sbjct: 101 VEQLMMLNHHLSEKVINLLESNHQILQENSQLKEKVSSFHLLMADVLLPMRNAESNINDR 160

Query: 169 IINNRRAEPNS 180
            +N  R EP++
Sbjct: 161 NVNYLRGEPSN 171

[Close]

BLAST of ClCG04G011500 vs. NCBI nr
Match: gi|659066657|ref|XP_008454802.1| (PREDICTED: light-inducible protein CPRF3-like [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 8.1e-59
Identity = 142/224 (63.39%), Postives = 152/224 (67.86%), Query Frame = 1


Query: 1   MEMNEDLGFGENPFNGSLKRHCSSHLIMETNRMMRR-EGD---DHED-ESNGCCG-FHRE 60
           MEMNEDLGFGENPFNGSLKRHCSSHL+METNRMMRR EGD   DHED ESNG CG FHRE
Sbjct: 1   MEMNEDLGFGENPFNGSLKRHCSSHLMMETNRMMRRSEGDTNNDHEDHESNGSCGNFHRE 60

Query: 61  ILFPTMITTTGQAPTTTNNNNCNVFS-PN-----------------------SASCYSND 120
           I+FP  + TT Q PT  NNNN NVFS PN                         +  +  
Sbjct: 61  IVFPATMITTSQTPTNNNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMAER 120

Query: 121 NILDVVEVLDIHRHHHLT-----------VGQLEVSNRQLSEKLIQVVECNQQILHENAE 180
            +  ++   +  R   +            VGQLEVSNRQLSEKLIQVVECNQQILHENAE
Sbjct: 121 KLRRMISNRESARRSRMRKKKQIEELQYQVGQLEVSNRQLSEKLIQVVECNQQILHENAE 180

[Close]

BLAST of ClCG04G011500 vs. NCBI nr
Match: gi|449439673|ref|XP_004137610.1| (PREDICTED: basic leucine zipper 43-like [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 2.3e-53
Identity = 140/226 (61.95%), Postives = 151/226 (66.81%), Query Frame = 1


Query: 1   MEMNEDLGFGENPFNGS-LKRHCSSHLIMETNR-MMRR-EGD--DHED-ESNGCCG--FH 60
           MEMNEDLGFGENPFNGS LKRHCSSHL+METNR MMRR EGD  DHED ESNG CG   H
Sbjct: 1   MEMNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIH 60

Query: 61  REILFPTMITTTGQAPTTTNNNNCNVFS-PN-----------------------SASCYS 120
           REI+FP+ + TT   PT  NNNN NVFS PN                         +  +
Sbjct: 61  REIVFPSTMITTSHTPT--NNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMA 120

Query: 121 NDNILDVVEVLDIHRHHHLT-----------VGQLEVSNRQLSEKLIQVVECNQQILHEN 180
              +  ++   +  R   +            VGQLEVSNRQLSEKLIQVVECNQQILHEN
Sbjct: 121 ERKLRRMISNRESARRSRMRKKKQIEELQYQVGQLEVSNRQLSEKLIQVVECNQQILHEN 180

[Close]

BLAST of ClCG04G011500 vs. NCBI nr
Match: gi|700208991|gb|KGN64087.1| (hypothetical protein Csa_1G040010 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39
Identity = 98/159 (61.64%), Postives = 112/159 (70.44%), Query Frame = 1


Query: 1   MEMNEDLGFGENPFNGS-LKRHCSSHLIMETNR-MMRR-EGD--DHED-ESNGCCG--FH 60
           MEMNEDLGFGENPFNGS LKRHCSSHL+METNR MMRR EGD  DHED ESNG CG   H
Sbjct: 1   MEMNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIH 60

Query: 61  REILFPTMITTTGQAPTTTNNNNCNVFS-PNSASCYSNDNILDVVEVLDIHRHHHLTVGQ 120
           REI+FP+ + TT   PT  NNNN NVFS PNSASCYSNDN+LDVVEVLD+HRHHHLTV  
Sbjct: 61  REIVFPSTMITTSHTPT--NNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTV-- 120

Query: 121 LEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQII 151
                     KL +++   +         K+++  LQ +
Sbjct: 121 ------MAERKLRRMISNRESARRSRMRKKKQIEELQTV 149

[Close]

BLAST of ClCG04G011500 vs. NCBI nr
Match: gi|703064951|ref|XP_010087331.1| (G-box-binding factor 1 [Morus notabilis])

HSP 1 Score: 80.9 bits (198), Expect = 2.6e-12
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 109 VGQLEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQIILTDFLKPLRN 161
           VGQL+ +NRQLSEKLIQ+++CNQQIL EN++LK KVSSLQIIL+D L PLRN
Sbjct: 133 VGQLQTTNRQLSEKLIQLLDCNQQILQENSQLKEKVSSLQIILSDLLVPLRN 184

[Close]

BLAST of ClCG04G011500 vs. NCBI nr
Match: gi|658001813|ref|XP_008393381.1| (PREDICTED: ocs element-binding factor 1-like [Malus domestica])

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-12
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 109 VGQLEVSNRQLSEKLIQVVECNQQILHENAELKRKVSSLQIILTDFLKPLRNCEDAFGNS 168
           V QL  +NRQLSEKLIQ++E NQQIL ENA+LK +VSSLQI L D + PLRN  D   N+
Sbjct: 101 VDQLHSTNRQLSEKLIQLLEGNQQILQENAQLKERVSSLQIFLADLITPLRNAGDVTVNT 160

Query: 169 IINNRRAEPNSS 181
             N  RAE +S+
Sbjct: 161 SGNQLRAEDSST 172

The following BLAST results are available for this feature:

BLAST of ClCG04G011500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTK4_CUCSA	1.0e-39	61.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040010 PE=4 SV=1	[more]
W9QY74_9ROSA	1.8e-12	75.00	G-box-binding factor 1 OS=Morus notabilis GN=L484_012664 PE=4 SV=1	[more]
M5WVR4_PRUPE	8.8e-12	58.90	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012281mg PE=4 SV=1	[more]
B9IE26_POPTR	2.4e-09	57.38	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s03580g P...	[more]
A0A067K596_JATCU	2.4e-09	50.70	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11777 PE=4 SV=1	[more]

BLAST of ClCG04G011500 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60830.1	3.0e-11	45.07	basic leucine-zipper 70	[more]

BLAST of ClCG04G011500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066657\|ref\|XP_008454802.1\|	8.1e-59	63.39	PREDICTED: light-inducible protein CPRF3-like [Cucumis melo]	[more]
gi\|449439673\|ref\|XP_004137610.1\|	2.3e-53	61.95	PREDICTED: basic leucine zipper 43-like [Cucumis sativus]	[more]
gi\|700208991\|gb\|KGN64087.1\|	1.4e-39	61.64	hypothetical protein Csa_1G040010 [Cucumis sativus]	[more]
gi\|703064951\|ref\|XP_010087331.1\|	2.6e-12	75.00	G-box-binding factor 1 [Morus notabilis]	[more]
gi\|658001813\|ref\|XP_008393381.1\|	5.7e-12	59.72	PREDICTED: ocs element-binding factor 1-like [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G011500.1	ClCG04G011500.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG04G011500	Csa1G040010	Cucumber (Chinese Long) v2	cuwcgB057
ClCG04G011500	MELO3C002059	Melon (DHL92) v3.5.1	mewcgB154
ClCG04G011500	Cla018535	Watermelon (97103) v1	wcgwmB255
ClCG04G011500	Cla97C04G078330	Watermelon (97103) v2	wcgwmbB200
ClCG04G011500	Bhi08G000880	Wax gourd	wcgwgoB399
ClCG04G011500	CSPI01G06470	Wild cucumber (PI 183967)	cpiwcgB059
ClCG04G011500	Cucsa.113510	Cucumber (Gy14) v1	cgywcgB160
ClCG04G011500	CmaCh13G010530	Cucurbita maxima (Rimu)	cmawcgB202
ClCG04G011500	CmoCh13G010950	Cucurbita moschata (Rifu)	cmowcgB191
ClCG04G011500	Lsi02G001470	Bottle gourd (USVL1VR-Ls)	lsiwcgB192
ClCG04G011500	CsGy1G006150	Cucumber (Gy14) v2	cgybwcgB053
ClCG04G011500	MELO3C002059.2	Melon (DHL92) v3.6.1	medwcgB146
ClCG04G011500	Carg04785	Silver-seed gourd	carwcgB0383
ClCG04G011500	CsaV3_1G006310	Cucumber (Chinese Long) v3	cucwcgB063

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G011500	Silver-seed gourd	carwcgB0449
ClCG04G011500	Silver-seed gourd	carwcgB0498
ClCG04G011500	Silver-seed gourd	carwcgB0579
ClCG04G011500	Cucumber (Chinese Long) v3	cucwcgB062
ClCG04G011500	Cucumber (Chinese Long) v3	cucwcgB064
ClCG04G011500	Watermelon (97103) v2	wcgwmbB202
ClCG04G011500	Wax gourd	wcgwgoB406
ClCG04G011500	Watermelon (Charleston Gray)	wcgwcgB149
ClCG04G011500	Cucumber (Gy14) v1	cgywcgB362
ClCG04G011500	Cucurbita maxima (Rimu)	cmawcgB063
ClCG04G011500	Cucurbita maxima (Rimu)	cmawcgB119
ClCG04G011500	Cucurbita maxima (Rimu)	cmawcgB360
ClCG04G011500	Cucurbita maxima (Rimu)	cmawcgB363
ClCG04G011500	Cucurbita moschata (Rifu)	cmowcgB056
ClCG04G011500	Cucurbita moschata (Rifu)	cmowcgB106
ClCG04G011500	Cucurbita moschata (Rifu)	cmowcgB353
ClCG04G011500	Cucurbita moschata (Rifu)	cmowcgB357
ClCG04G011500	Wild cucumber (PI 183967)	cpiwcgB061
ClCG04G011500	Wild cucumber (PI 183967)	cpiwcgB058
ClCG04G011500	Cucumber (Chinese Long) v2	cuwcgB056
ClCG04G011500	Cucumber (Chinese Long) v2	cuwcgB058
ClCG04G011500	Melon (DHL92) v3.5.1	mewcgB248
ClCG04G011500	Watermelon (97103) v1	wcgwmB267
ClCG04G011500	Cucurbita pepo (Zucchini)	cpewcgB038
ClCG04G011500	Cucurbita pepo (Zucchini)	cpewcgB039
ClCG04G011500	Cucurbita pepo (Zucchini)	cpewcgB331
ClCG04G011500	Cucurbita pepo (Zucchini)	cpewcgB471
ClCG04G011500	Cucurbita pepo (Zucchini)	cpewcgB607
ClCG04G011500	Bottle gourd (USVL1VR-Ls)	lsiwcgB366
ClCG04G011500	Cucumber (Gy14) v2	cgybwcgB052
ClCG04G011500	Cucumber (Gy14) v2	cgybwcgB054
ClCG04G011500	Melon (DHL92) v3.6.1	medwcgB240