Cla018535 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018535
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	BZIP transcription factor family protein (AHRD V1 -* D7MUE4_ARALL); contains Interpro domain(s) IPR004827 Basic-leucine zipper (bZIP) transcription factor
Location	Chr4 : 23090162 .. 23090617 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAATGAAGATTTGGGATTTGGTGAAAATCCATTTAATGGAAGCTTGAAAAGGCATTGTTCTTCACATTTGATCATGGAAACAAATAGGATGATGAGAAGAGAAGGTGATGATCATGAAGATGAATCAAATGGTTGTTGTGGTTTCCATAGAGAAATATTGTTCCCTACTATGATCACTACTACTGGCCAAGCCCCAACCACCACCAACAACAACAATTGTAATGTCTTCTCTCCCAATTCCGCTTCTTGCTATAGCAACGACAACATTTTGGACGTCGTTGAAGTTCTCGACATCCATCGTCATCACCATCTGACTGTAATGGCCGAGAGGAAGCTAAGAAGAATGATATCAAATCGAGAATCCGCAAGGAGGTCACGAATGAGAAAGAAGAAGCAGATCGAAGAGTTACAATACCAGGCAAGATTTTCAAATATATATCTACCTTAA

mRNA sequence

ATGGAGATGAATGAAGATTTGGGATTTGGTGAAAATCCATTTAATGGAAGCTTGAAAAGGCATTGTTCTTCACATTTGATCATGGAAACAAATAGGATGATGAGAAGAGAAGGTGATGATCATGAAGATGAATCAAATGGTTGTTGTGGTTTCCATAGAGAAATATTGTTCCCTACTATGATCACTACTACTGGCCAAGCCCCAACCACCACCAACAACAACAATTGTAATGTCTTCTCTCCCAATTCCGCTTCTTGCTATAGCAACGACAACATTTTGGACGTCGTTGAAGTTCTCGACATCCATCGTCATCACCATCTGACTGTAATGGCCGAGAGGAAGCTAAGAAGAATGATATCAAATCGAGAATCCGCAAGGAGGTCACGAATGAGAAAGAAGAAGCAGATCGAAGAGTTACAATACCAGGCAAGATTTTCAAATATATATCTACCTTAA

Coding sequence (CDS)

ATGGAGATGAATGAAGATTTGGGATTTGGTGAAAATCCATTTAATGGAAGCTTGAAAAGGCATTGTTCTTCACATTTGATCATGGAAACAAATAGGATGATGAGAAGAGAAGGTGATGATCATGAAGATGAATCAAATGGTTGTTGTGGTTTCCATAGAGAAATATTGTTCCCTACTATGATCACTACTACTGGCCAAGCCCCAACCACCACCAACAACAACAATTGTAATGTCTTCTCTCCCAATTCCGCTTCTTGCTATAGCAACGACAACATTTTGGACGTCGTTGAAGTTCTCGACATCCATCGTCATCACCATCTGACTGTAATGGCCGAGAGGAAGCTAAGAAGAATGATATCAAATCGAGAATCCGCAAGGAGGTCACGAATGAGAAAGAAGAAGCAGATCGAAGAGTTACAATACCAGGCAAGATTTTCAAATATATATCTACCTTAA

Protein sequence

MEMNEDLGFGENPFNGSLKRHCSSHLIMETNRMMRREGDDHEDESNGCCGFHREILFPTMITTTGQAPTTTNNNNCNVFSPNSASCYSNDNILDVVEVLDIHRHHHLTVMAERKLRRMISNRESARRSRMRKKKQIEELQYQARFSNIYLP

Homology

[Close]

BLAST of Cla018535 vs. Swiss-Prot
Match: BZP43_ARATH (Basic leucine zipper 43 OS=Arabidopsis thaliana GN=BZIP43 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-06
Identity = 33/85 (38.82%), Postives = 43/85 (50.59%), Query Frame = 1


Query: 58  PTMITTTGQAPTTTNNNNCNVFSPNSASCYSNDNILDVVEVLDIHRHHHLTVMAERKLRR 117
           PT     GQ P    +    V +    S  S++N        D    +H  ++ ERK +R
Sbjct: 22  PTSSPFCGQNPNPFFSFETGVNTSQFMSLISSNN-----STSDEAEENHKEIINERKQKR 81

Query: 118 MISNRESARRSRMRKKKQIEELQYQ 143
            ISNRESARRSRMRK++Q++EL  Q
Sbjct: 82  KISNRESARRSRMRKQRQVDELWSQ 101

[Close]

BLAST of Cla018535 vs. TrEMBL
Match: A0A0A0LTK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040010 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.9e-56
Identity = 125/156 (80.13%), Postives = 132/156 (84.62%), Query Frame = 1


Query: 1   MEMNEDLGFGENPFNGS-LKRHCSSHLIMETNR-MMRR-EGD--DHED-ESNGCCG--FH 60
           MEMNEDLGFGENPFNGS LKRHCSSHL+METNR MMRR EGD  DHED ESNG CG   H
Sbjct: 1   MEMNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIH 60

Query: 61  REILFPTMITTTGQAPTTTNNNNCNVFS-PNSASCYSNDNILDVVEVLDIHRHHHLTVMA 120
           REI+FP+ + TT   PT  NNNN NVFS PNSASCYSNDN+LDVVEVLD+HRHHHLTVMA
Sbjct: 61  REIVFPSTMITTSHTPT--NNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMA 120

Query: 121 ERKLRRMISNRESARRSRMRKKKQIEELQYQARFSN 148
           ERKLRRMISNRESARRSRMRKKKQIEELQ    F +
Sbjct: 121 ERKLRRMISNRESARRSRMRKKKQIEELQTVGGFKS 154

[Close]

BLAST of Cla018535 vs. TrEMBL
Match: D9ZIR8_MALDO (BZIP domain class transcription factor OS=Malus domestica GN=BZIP9 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 79  FSPNSASCYSNDNILDVVEVLDIHRHHHLTVMAERKLRRMISNRESARRSRMRKKKQIEE 138
           F+  S+S  +N +  D     D   HHHL V+ ERK RRMISNRESARRSRMRK+K ++E
Sbjct: 56  FTQQSSSLSNNSSTSD-----DAEEHHHLRVIDERKHRRMISNRESARRSRMRKQKHLDE 114

Query: 139 LQYQ 143
           L  Q
Sbjct: 116 LWSQ 114

[Close]

BLAST of Cla018535 vs. TrEMBL
Match: R0EZJ9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10028041mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 1


Query: 51  FHREILFPTMITTTGQAPTTTNNNNCNVFSPNSASCYSNDNILDVVEVLDIHRHHHLTVM 110
           F+   L  T  +   Q+ +T +NN+ +   PN+ + +                HH     
Sbjct: 24  FNSAFLSNTDFSVQLQSVSTRSNNHQSQLDPNALNIF----------------HHEALAP 83

Query: 111 AERKLRRMISNRESARRSRMRKKKQIEELQYQ 143
            ER+ RRM+SNRESARRSRMRKKKQIEELQ Q
Sbjct: 84  EERRARRMVSNRESARRSRMRKKKQIEELQQQ 99

[Close]

BLAST of Cla018535 vs. TrEMBL
Match: M5WVR4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012281mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 79  FSPNSASCYSNDNILDVVEVLDIHRHHHLTVMAERKLRRMISNRESARRSRMRKKKQIEE 138
           FSPN++S  SN+   D      I+         ER+L+RMISNRESARRSRMRKKKQIEE
Sbjct: 48  FSPNTSSL-SNETAFDEAGEQSINY--------ERRLKRMISNRESARRSRMRKKKQIEE 102

Query: 139 LQYQ 143
           LQYQ
Sbjct: 108 LQYQ 102

[Close]

BLAST of Cla018535 vs. TrEMBL
Match: A0A067K596_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11777 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 77  NVFSPNSASCYSNDNILDVVEVLDIHRHHHLTVMAERKLRRMISNRESARRSRMRKKKQI 136
           ++ SPN++   +N  + +  +       H + +  ER+L+RMISNRESARRSRMRKKKQI
Sbjct: 69  HILSPNTSPLSANSTLNETSD-------HQMGISHERRLKRMISNRESARRSRMRKKKQI 127

Query: 137 EELQYQ 143
           EELQ Q
Sbjct: 129 EELQCQ 127

[Close]

BLAST of Cla018535 vs. NCBI nr
Match: gi|659066657|ref|XP_008454802.1| (PREDICTED: light-inducible protein CPRF3-like [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 7.8e-63
Identity = 128/149 (85.91%), Postives = 133/149 (89.26%), Query Frame = 1


Query: 1   MEMNEDLGFGENPFNGSLKRHCSSHLIMETNRMMRR-EGD---DHED-ESNGCCG-FHRE 60
           MEMNEDLGFGENPFNGSLKRHCSSHL+METNRMMRR EGD   DHED ESNG CG FHRE
Sbjct: 1   MEMNEDLGFGENPFNGSLKRHCSSHLMMETNRMMRRSEGDTNNDHEDHESNGSCGNFHRE 60

Query: 61  ILFPTMITTTGQAPTTTNNNNCNVFS-PNSASCYSNDNILDVVEVLDIHRHHHLTVMAER 120
           I+FP  + TT Q PT  NNNN NVFS PNSASCYSNDN+LDVVEVLD+HRHHHLTVMAER
Sbjct: 61  IVFPATMITTSQTPTNNNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMAER 120

Query: 121 KLRRMISNRESARRSRMRKKKQIEELQYQ 143
           KLRRMISNRESARRSRMRKKKQIEELQYQ
Sbjct: 121 KLRRMISNRESARRSRMRKKKQIEELQYQ 149

[Close]

BLAST of Cla018535 vs. NCBI nr
Match: gi|449439673|ref|XP_004137610.1| (PREDICTED: basic leucine zipper 43-like [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 126/151 (83.44%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 1   MEMNEDLGFGENPFNGS-LKRHCSSHLIMETNR-MMRR-EGD--DHED-ESNGCCG--FH 60
           MEMNEDLGFGENPFNGS LKRHCSSHL+METNR MMRR EGD  DHED ESNG CG   H
Sbjct: 1   MEMNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIH 60

Query: 61  REILFPTMITTTGQAPTTTNNNNCNVFS-PNSASCYSNDNILDVVEVLDIHRHHHLTVMA 120
           REI+FP+ + TT   PT  NNNN NVFS PNSASCYSNDN+LDVVEVLD+HRHHHLTVMA
Sbjct: 61  REIVFPSTMITTSHTPT--NNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMA 120

Query: 121 ERKLRRMISNRESARRSRMRKKKQIEELQYQ 143
           ERKLRRMISNRESARRSRMRKKKQIEELQYQ
Sbjct: 121 ERKLRRMISNRESARRSRMRKKKQIEELQYQ 149

[Close]

BLAST of Cla018535 vs. NCBI nr
Match: gi|700208991|gb|KGN64087.1| (hypothetical protein Csa_1G040010 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 4.1e-56
Identity = 125/156 (80.13%), Postives = 132/156 (84.62%), Query Frame = 1


Query: 1   MEMNEDLGFGENPFNGS-LKRHCSSHLIMETNR-MMRR-EGD--DHED-ESNGCCG--FH 60
           MEMNEDLGFGENPFNGS LKRHCSSHL+METNR MMRR EGD  DHED ESNG CG   H
Sbjct: 1   MEMNEDLGFGENPFNGSCLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNGSCGNLIH 60

Query: 61  REILFPTMITTTGQAPTTTNNNNCNVFS-PNSASCYSNDNILDVVEVLDIHRHHHLTVMA 120
           REI+FP+ + TT   PT  NNNN NVFS PNSASCYSNDN+LDVVEVLD+HRHHHLTVMA
Sbjct: 61  REIVFPSTMITTSHTPT--NNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHHLTVMA 120

Query: 121 ERKLRRMISNRESARRSRMRKKKQIEELQYQARFSN 148
           ERKLRRMISNRESARRSRMRKKKQIEELQ    F +
Sbjct: 121 ERKLRRMISNRESARRSRMRKKKQIEELQTVGGFKS 154

[Close]

BLAST of Cla018535 vs. NCBI nr
Match: gi|729301721|ref|XP_010522314.1| (PREDICTED: basic leucine zipper 43 [Tarenaya hassleriana])

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 68  PTTTNNN-NCNVFSPNSASCYSNDNILDVV-EVLDIHRHHHL---TVMAERKLRRMISNR 127
           PT T ++   +  SPN+++  +N + LD   + +  H HHH    +++ E+++RRM+SNR
Sbjct: 30  PTNTESHVQLHSVSPNTSTLSNNLSNLDQTRDTIYHHGHHHHQQHSMIDEKRIRRMVSNR 89

Query: 128 ESARRSRMRKKKQIEELQYQ 143
           ESARRSRMRKKKQIEELQ Q
Sbjct: 90  ESARRSRMRKKKQIEELQLQ 109

[Close]

BLAST of Cla018535 vs. NCBI nr
Match: gi|694317718|ref|XP_009339530.1| (PREDICTED: transcriptional activator TAF-1, partial [Pyrus x bretschneideri])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 40/64 (62.50%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 79  FSPNSASCYSNDNILDVVEVLDIHRHHHLTVMAERKLRRMISNRESARRSRMRKKKQIEE 138
           FSPN AS  SN+   D     D++         ERKL+RMISNRESARRSRMRKKKQIEE
Sbjct: 46  FSPN-ASSLSNEAAFDEAGEPDMNY--------ERKLKRMISNRESARRSRMRKKKQIEE 100

Query: 139 LQYQ 143
           LQYQ
Sbjct: 106 LQYQ 100

The following BLAST results are available for this feature:

BLAST of Cla018535 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BZP43_ARATH	6.7e-06	38.82	Basic leucine zipper 43 OS=Arabidopsis thaliana GN=BZIP43 PE=1 SV=1	[more]

BLAST of Cla018535 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTK4_CUCSA	2.9e-56	80.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040010 PE=4 SV=1	[more]
D9ZIR8_MALDO	1.4e-07	54.69	BZIP domain class transcription factor OS=Malus domestica GN=BZIP9 PE=2 SV=1	[more]
R0EZJ9_9BRAS	1.4e-07	41.30	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10028041mg PE=4 SV=1	[more]
M5WVR4_PRUPE	2.5e-07	59.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012281mg PE=4 SV=1	[more]
A0A067K596_JATCU	3.2e-07	50.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11777 PE=4 SV=1	[more]

BLAST of Cla018535 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066657\|ref\|XP_008454802.1\|	7.8e-63	85.91	PREDICTED: light-inducible protein CPRF3-like [Cucumis melo]	[more]
gi\|449439673\|ref\|XP_004137610.1\|	2.2e-57	83.44	PREDICTED: basic leucine zipper 43-like [Cucumis sativus]	[more]
gi\|700208991\|gb\|KGN64087.1\|	4.1e-56	80.13	hypothetical protein Csa_1G040010 [Cucumis sativus]	[more]
gi\|729301721\|ref\|XP_010522314.1\|	2.4e-08	48.75	PREDICTED: basic leucine zipper 43 [Tarenaya hassleriana]	[more]
gi\|694317718\|ref\|XP_009339530.1\|	1.2e-07	62.50	PREDICTED: transcriptional activator TAF-1, partial [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004827	bZIP

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU47992	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018535	Cla018535.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU47992	WMU47992	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 113..141 score: 2.
IPR004827	Basic-leucine zipper domain	PROSITE	PS00036	BZIP_BASIC	coord: 116..131 scor
IPR004827	Basic-leucine zipper domain	PROFILE	PS50217	BZIP	coord: 111..143 score: 8
None	No IPR available	unknown	Coil	Coil	coord: 122..142 scor
None	No IPR available	GENE3D	G3DSA:1.20.5.170		coord: 112..143 score: 3.
None	No IPR available	PANTHER	PTHR22952	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	coord: 85..139 score: 2.3
None	No IPR available	PANTHER	PTHR22952:SF110	BZIP PROTEIN (ATBZIP48)-RELATED	coord: 85..139 score: 2.3
None	No IPR available	unknown	SSF57959	Leucine zipper domain	coord: 113..145 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018535	Cla97C04G078330	Watermelon (97103) v2	wmwmbB291
Cla018535	Csa1G040010	Cucumber (Chinese Long) v2	cuwmB062
Cla018535	MELO3C002059	Melon (DHL92) v3.5.1	mewmB174
Cla018535	ClCG04G011500	Watermelon (Charleston Gray)	wcgwmB255
Cla018535	CSPI01G06470	Wild cucumber (PI 183967)	cpiwmB066
Cla018535	Cucsa.113510	Cucumber (Gy14) v1	cgywmB163
Cla018535	CmaCh13G010530	Cucurbita maxima (Rimu)	cmawmB206
Cla018535	CmoCh13G010950	Cucurbita moschata (Rifu)	cmowmB194
Cla018535	Lsi02G001470	Bottle gourd (USVL1VR-Ls)	lsiwmB212
Cla018535	CsGy1G006150	Cucumber (Gy14) v2	cgybwmB064
Cla018535	MELO3C002059.2	Melon (DHL92) v3.6.1	medwmB170
Cla018535	Carg04785	Silver-seed gourd	carwmB0387
Cla018535	CsaV3_1G006310	Cucumber (Chinese Long) v3	cucwmB070
Cla018535	Bhi08G000880	Wax gourd	wgowmB516

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018535	Cucurbita pepo (Zucchini)	cpewmB049
Cla018535	Cucurbita pepo (Zucchini)	cpewmB050
Cla018535	Cucurbita pepo (Zucchini)	cpewmB367
Cla018535	Cucurbita pepo (Zucchini)	cpewmB523
Cla018535	Cucurbita pepo (Zucchini)	cpewmB664
Cla018535	Bottle gourd (USVL1VR-Ls)	lsiwmB408
Cla018535	Cucumber (Gy14) v2	cgybwmB063
Cla018535	Cucumber (Gy14) v2	cgybwmB065
Cla018535	Melon (DHL92) v3.6.1	medwmB274
Cla018535	Silver-seed gourd	carwmB0459
Cla018535	Silver-seed gourd	carwmB0509
Cla018535	Silver-seed gourd	carwmB0510
Cla018535	Silver-seed gourd	carwmB0592
Cla018535	Cucumber (Chinese Long) v3	cucwmB069
Cla018535	Cucumber (Chinese Long) v3	cucwmB071
Cla018535	Watermelon (97103) v2	wmwmbB301
Cla018535	Wax gourd	wgowmB670
Cla018535	Watermelon (97103) v1	wmwmB156
Cla018535	Cucumber (Gy14) v1	cgywmB386
Cla018535	Cucumber (Gy14) v1	cgywmB388
Cla018535	Cucurbita maxima (Rimu)	cmawmB062
Cla018535	Cucurbita maxima (Rimu)	cmawmB120
Cla018535	Cucurbita maxima (Rimu)	cmawmB396
Cla018535	Cucurbita maxima (Rimu)	cmawmB393
Cla018535	Cucurbita moschata (Rifu)	cmowmB055
Cla018535	Cucurbita moschata (Rifu)	cmowmB108
Cla018535	Cucurbita moschata (Rifu)	cmowmB385
Cla018535	Cucurbita moschata (Rifu)	cmowmB389
Cla018535	Melon (DHL92) v3.5.1	mewmB281
Cla018535	Watermelon (Charleston Gray)	wcgwmB339
Cla018535	Cucumber (Chinese Long) v2	cuwmB061
Cla018535	Cucumber (Chinese Long) v2	cuwmB063