CmoCh13G005730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G005730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chlorophyll a-b binding protein 21, chloroplastic
Location	Cmo_Chr13 : 6475233 .. 6477048 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATTCATAGCCAATGAAATCATACACGTTGATTTTCCCACGATAACAATATTCTGTATTTAAAAACTGAATCTCAACGGCTTTCTCATCACTACACCAGCTAACAACTTTGAACGCATTTCATTTCTGTGATCCTTTCTTGCAATGGCGGCCTCTGCAATGGCTCTCTCCTCTCCGTCGCTTGCCGGGAAGGCAGTGAAACTCACTCCCTCCTCCTCGGAGATTGTCGGCAATGGCAGAGTCAGCATGAGGAAATCCGCCGCCAAATCTGTTTCTTCTGGAAGCCTATGGTACGGACCTGACCGTGTCAAGTATTTGGGTCCATTCTCCGGCGAGTCTCCGTCCTACCTCACCGGGGAGTTCCCCGGTGACTATGGCTGGGACACTGCCGGACTTTCTGCTGACCCTGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTTATCCACTCCAGGTAAGAACTCAATAGCCCAACTTTACTTTAGGCCCATCATAAACAAAATTTTCAAAGAAAAAAGGATTTTTTTTAGAAGGGTTGGGAGGGAGTTTGTTGATCATGAATTTATAAGTACCAAATAACGACGTCTTCTAAAAAACCCAAAACAAAGTCACTAGAGTTTATGTTAAAAGTGAATAATATTTAAGATCGTGAAGATCAGTGATTGCTAACATGTTATCAATATCATGTCCTTAACTTAATTACGTCAATGGAATCTTCAAATGTCGAACAAAAAACGAAAGTATAGTCAAAAGTGATTCTTTGTTCGAGGACTCCAGAAAATATAGTCGAGCCTCGATTGTTCAAGGGATCCATAAGCCTTAGTAGAGGCTTTATAGTGTAATTTGTTCGGAGGTGTCATGCCCTTTTAACTTAGTCACGACAATAAAATCTTAAATCTGGAACAAAGAATGAAGTACAGTCAAATGTGACTCAAATATCAAACAAAGAGTATTCTGGGAGGATTGTTGGGAAGGAGTTTCGGGTTAAATGATCATAAGTTTATAAGTAAGGAATACAACTACATTGTTACCAGATCCATGATTCCTAACATTTTTTTCTTTTCTTGGGTCGGCCATTTTACAGGTGGGCTATGCTCGGAGCATTGGGGTGCGTGTTCCCGGAGCTTCTATCCCGCAACGGCGTGAAGTTTGGGGAAGCGGTGTGGTTCAAGGCAGGTTCACAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCATCGCAGGTGGTTCTGATGGGGGCGGTGGAGGGATACCGTATTGCGGGTGGGCCATTGGGGGAGGTGACGGATCCGATATACCCGGGTGGGAGCTTTGACCCGTTGGGACTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAGGTGAAGGAGCTTAAGAATGGAAGACTGGCCATGTTCTCCATGTTTGGCTTCTTCGTTCAGGCCATCGTGACTGGAAAGGGCCCATTGGAGAATCTTGCCGATCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTACGCCACCAACTTTGTCCCTGGAAAATAAGCTATAATTGTTTGTTCCTAGAGTGCTTTCGAGAACGAAACGACTGCGCTTTGTTAATTTTAGTTCTCCATCTTTAAACCAAAATCAAATGAAATAACATGTGGTTCTATATCCAAATTAATTCTAATGAGATAAAAGAGCTCACGAAAGGAAGATCGTTCGAGGACAATCGATATTAAATTATAAGTTTAGTTCTAAATTTTGAAATTTTTAAACTGTGACAAATCTAATGGAGAAAGGAAC

mRNA sequence

GAGATTCATAGCCAATGAAATCATACACGTTGATTTTCCCACGATAACAATATTCTGTATTTAAAAACTGAATCTCAACGGCTTTCTCATCACTACACCAGCTAACAACTTTGAACGCATTTCATTTCTGTGATCCTTTCTTGCAATGGCGGCCTCTGCAATGGCTCTCTCCTCTCCGTCGCTTGCCGGGAAGGCAGTGAAACTCACTCCCTCCTCCTCGGAGATTGTCGGCAATGGCAGAGTCAGCATGAGGAAATCCGCCGCCAAATCTGTTTCTTCTGGAAGCCTATGGTACGGACCTGACCGTGTCAAGTATTTGGGTCCATTCTCCGGCGAGTCTCCGTCCTACCTCACCGGGGAGTTCCCCGGTGACTATGGCTGGGACACTGCCGGACTTTCTGCTGACCCTGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTTATCCACTCCAGGTGGGCTATGCTCGGAGCATTGGGGTGCGTGTTCCCGGAGCTTCTATCCCGCAACGGCGTGAAGTTTGGGGAAGCGGTGTGGTTCAAGGCAGGTTCACAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCATCGCAGGTGGTTCTGATGGGGGCGGTGGAGGGATACCGTATTGCGGGTGGGCCATTGGGGGAGGTGACGGATCCGATATACCCGGGTGGGAGCTTTGACCCGTTGGGACTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAGGTGAAGGAGCTTAAGAATGGAAGACTGGCCATGTTCTCCATGTTTGGCTTCTTCGTTCAGGCCATCGTGACTGGAAAGGGCCCATTGGAGAATCTTGCCGATCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTACGCCACCAACTTTGTCCCTGGAAAATAAGCTATAATTGTTTGTTCCTAGAGTGCTTTCGAGAACGAAACGACTGCGCTTTGTTAATTTTAGTTCTCCATCTTTAAACCAAAATCAAATGAAATAACATGTGGTTCTATATCCAAATTAATTCTAATGAGATAAAAGAGCTCACGAAAGGAAGATCGTTCGAGGACAATCGATATTAAATTATAAGTTTAGTTCTAAATTTTGAAATTTTTAAACTGTGACAAATCTAATGGAGAAAGGAAC

Coding sequence (CDS)

ATGGCGGCCTCTGCAATGGCTCTCTCCTCTCCGTCGCTTGCCGGGAAGGCAGTGAAACTCACTCCCTCCTCCTCGGAGATTGTCGGCAATGGCAGAGTCAGCATGAGGAAATCCGCCGCCAAATCTGTTTCTTCTGGAAGCCTATGGTACGGACCTGACCGTGTCAAGTATTTGGGTCCATTCTCCGGCGAGTCTCCGTCCTACCTCACCGGGGAGTTCCCCGGTGACTATGGCTGGGACACTGCCGGACTTTCTGCTGACCCTGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTTATCCACTCCAGGTGGGCTATGCTCGGAGCATTGGGGTGCGTGTTCCCGGAGCTTCTATCCCGCAACGGCGTGAAGTTTGGGGAAGCGGTGTGGTTCAAGGCAGGTTCACAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCATCGCAGGTGGTTCTGATGGGGGCGGTGGAGGGATACCGTATTGCGGGTGGGCCATTGGGGGAGGTGACGGATCCGATATACCCGGGTGGGAGCTTTGACCCGTTGGGACTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAGGTGAAGGAGCTTAAGAATGGAAGACTGGCCATGTTCTCCATGTTTGGCTTCTTCGTTCAGGCCATCGTGACTGGAAAGGGCCCATTGGAGAATCTTGCCGATCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTACGCCACCAACTTTGTCCCTGGAAAATAA

Homology

[Close]

BLAST of CmoCh13G005730 vs. Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 1.7e-142
Identity = 247/267 (92.51%), Postives = 258/267 (96.63%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSA--AKSVSSGSLWYGPDRVKYL 60
           MAAS MALSSPS AGKAVKL+PSSSEI GNG+V+MRK+A  AK+VSSGS WYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh13G005730 vs. Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 4.3e-141
Identity = 241/265 (90.94%), Postives = 254/265 (95.85%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAA+ MALSSPS AG+AVKL+PS+ EI GNGRVSMRK+ AK V+S S WYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 9.5e-141
Identity = 247/264 (93.56%), Postives = 253/264 (95.83%), Query Frame = 1


Query: 2   AASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGPF 61
           AAS+MALSSPSLAGKAVKL PS+ E+   GRVSMRK+  K VSSGS WYGPDRVKYLGPF
Sbjct: 3   AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPF 62

Query: 62  SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
           SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN
Sbjct: 63  SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122

Query: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPL 181
           GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QV+LMGAVEGYRIAGGPL
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 182

Query: 182 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
           GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 183 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242

Query: 242 LADHLADPVNNNAWAYATNFVPGK 266
           LADHLA PVNNNAWAYATNFVPGK
Sbjct: 243 LADHLAGPVNNNAWAYATNFVPGK 263

[Close]

BLAST of CmoCh13G005730 vs. Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 1.2e-140
Identity = 241/265 (90.94%), Postives = 254/265 (95.85%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAA+ MALSSPS AG+AVKL+PS+SEI GNGR++MRK+ AKS  S S WYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 1.6e-140
Identity = 245/267 (91.76%), Postives = 254/267 (95.13%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSA--AKSVSSGSLWYGPDRVKYL 60
           MA S MALSS + AGKAVKL+PSSSEI GNGRV+MRK+A  AK  SSGS WYGPDRVKYL
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60

Query: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmoCh13G005730 vs. TrEMBL
Match: A0A0A0LX23_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G445860 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 3.2e-143
Identity = 253/265 (95.47%), Postives = 256/265 (96.60%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAAS+MALSSPS AGK VKLTPSS E+ GN RV+MRKSA KSVSSGS WYGPDRVKYLGP
Sbjct: 1   MAASSMALSSPSFAGKVVKLTPSSPELFGNSRVTMRKSATKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHL DPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLTDPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. TrEMBL
Match: B9SF47_RICCO (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_1214080 PE=3 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 1.6e-142
Identity = 249/265 (93.96%), Postives = 258/265 (97.36%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MA S MALSSPS AGKAVKL+PS+ E++GNGRVSMRK+AAK+VSSGS WYGPDRVKYLGP
Sbjct: 1   MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKNVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. TrEMBL
Match: B9S155_RICCO (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_0633890 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 2.7e-142
Identity = 249/265 (93.96%), Postives = 257/265 (96.98%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MA S MALSSPS AGKAVKL+PS+ E++GNGRVSMRK+AAKSVSSGS WYGPDRVKYLGP
Sbjct: 1   MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. TrEMBL
Match: A0A0A0KI21_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_6G522690 PE=3 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 3.0e-141
Identity = 248/265 (93.58%), Postives = 258/265 (97.36%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAASAMALSSP+LAG+AVKL+P++ EI GN + +MRK+A+KSVSSGS WYGPDRVKYLGP
Sbjct: 1   MAASAMALSSPTLAGQAVKLSPTAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. TrEMBL
Match: A9PJK6_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 3.0e-141
Identity = 251/265 (94.72%), Postives = 257/265 (96.98%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAA+ MALSSPSLAGKAVKL PSSSEI+GNGRVSMRK+  K V SGS WYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSLAGKAVKLNPSSSEIMGNGRVSMRKTT-KPVPSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHL+DPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLSDPVNNNAWAYATNFVPGK 264

[Close]

BLAST of CmoCh13G005730 vs. TAIR10
Match: AT1G29930.1 (AT1G29930.1 chlorophyll A/B binding protein 1)

HSP 1 Score: 480.3 bits (1235), Expect = 7.5e-136
Identity = 234/267 (87.64%), Postives = 253/267 (94.76%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVS-SGSLWYGPDRVKYLG 60
           MAAS MALSSP+ AGKAVKL+P++SE++G+GRV+MRK+ AK    SGS WYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGESPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmoCh13G005730 vs. TAIR10
Match: AT1G29920.1 (AT1G29920.1 chlorophyll A/B-binding protein 2)

HSP 1 Score: 478.4 bits (1230), Expect = 2.9e-135
Identity = 233/267 (87.27%), Postives = 252/267 (94.38%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVS-SGSLWYGPDRVKYLG 60
           MAAS MALSSP+ AGKAV L+P++SE++G+GRV+MRK+ AK    SGS WYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGESPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmoCh13G005730 vs. TAIR10
Match: AT1G29910.1 (AT1G29910.1 chlorophyll A/B binding protein 3)

HSP 1 Score: 478.4 bits (1230), Expect = 2.9e-135
Identity = 233/267 (87.27%), Postives = 252/267 (94.38%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVS-SGSLWYGPDRVKYLG 60
           MAAS MALSSP+ AGKAV L+P++SE++G+GRV+MRK+ AK    SGS WYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGESPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmoCh13G005730 vs. TAIR10
Match: AT2G34430.1 (AT2G34430.1 light-harvesting chlorophyll-protein complex II subunit B1)

HSP 1 Score: 478.4 bits (1230), Expect = 2.9e-135
Identity = 231/266 (86.84%), Postives = 250/266 (93.98%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAAS MALSSP+L GKAVKL+P++SE+ G GR++MRK++  +  SGS WYG DRVKYLGP
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG-G 180
           NGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG G
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180

Query: 181 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWAYATNFVPGK 266
           ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of CmoCh13G005730 vs. TAIR10
Match: AT2G34420.1 (AT2G34420.1 photosystem II light harvesting complex gene B1B2)

HSP 1 Score: 469.9 bits (1208), Expect = 1.0e-132
Identity = 231/267 (86.52%), Postives = 250/267 (93.63%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVS-SGSLWYGPDRVKYLG 60
           MA+S MALSSP+ AGKAVK  P++S+++G+GRV+MRK+ AK    SGS WYG DRVKYLG
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. NCBI nr
Match: gi|659068394|ref|XP_008444193.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo])

HSP 1 Score: 521.5 bits (1342), Expect = 8.3e-145
Identity = 257/265 (96.98%), Postives = 259/265 (97.74%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAAS MALSSPSLAGKAVKLTPSS E+ GN RV+MRKSAAKSVSSGS WYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. NCBI nr
Match: gi|449459364|ref|XP_004147416.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis sativus])

HSP 1 Score: 515.8 bits (1327), Expect = 4.6e-143
Identity = 253/265 (95.47%), Postives = 256/265 (96.60%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAAS+MALSSPS AGK VKLTPSS E+ GN RV+MRKSA KSVSSGS WYGPDRVKYLGP
Sbjct: 1   MAASSMALSSPSFAGKVVKLTPSSPELFGNSRVTMRKSATKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHL DPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLTDPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. NCBI nr
Match: gi|255567270|ref|XP_002524616.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Ricinus communis])

HSP 1 Score: 513.5 bits (1321), Expect = 2.3e-142
Identity = 249/265 (93.96%), Postives = 258/265 (97.36%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MA S MALSSPS AGKAVKL+PS+ E++GNGRVSMRK+AAK+VSSGS WYGPDRVKYLGP
Sbjct: 1   MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKNVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CmoCh13G005730 vs. NCBI nr
Match: gi|659078310|ref|XP_008439659.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo])

HSP 1 Score: 512.7 bits (1319), Expect = 3.9e-142
Identity = 250/265 (94.34%), Postives = 257/265 (96.98%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MAAS MALSSPSLAGKAVKL+P++ EI G GR++MRK+A KSVSSGS WYGPDRVKYLGP
Sbjct: 74  MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKSVSSGSPWYGPDRVKYLGP 133

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 134 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 193

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 194 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 253

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 254 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 313

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 314 NLADHLADPVNNNAWAYATNFVPGK 338

[Close]

BLAST of CmoCh13G005730 vs. NCBI nr
Match: gi|255557387|ref|XP_002519724.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Ricinus communis])

HSP 1 Score: 512.7 bits (1319), Expect = 3.9e-142
Identity = 249/265 (93.96%), Postives = 257/265 (96.98%), Query Frame = 1


Query: 1   MAASAMALSSPSLAGKAVKLTPSSSEIVGNGRVSMRKSAAKSVSSGSLWYGPDRVKYLGP 60
           MA S MALSSPS AGKAVKL+PS+ E++GNGRVSMRK+AAKSVSSGS WYGPDRVKYLGP
Sbjct: 1   MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of CmoCh13G005730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB24_TOBAC	1.7e-142	92.51	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 ...	[more]
CB22_TOBAC	4.3e-141	90.94	Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 ...	[more]
CB23_SOYBN	9.5e-141	93.56	Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=...	[more]
CB2B_SOLLC	1.2e-140	90.94	Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB...	[more]
CB2G_SOLLC	1.6e-140	91.76	Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB...	[more]

BLAST of CmoCh13G005730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX23_CUCSA	3.2e-143	95.47	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G44586...	[more]
B9SF47_RICCO	1.6e-142	93.96	Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_12140...	[more]
B9S155_RICCO	2.7e-142	93.96	Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_06338...	[more]
A0A0A0KI21_CUCSA	3.0e-141	93.58	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_6G52269...	[more]
A9PJK6_9ROSI	3.0e-141	94.72	Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa x Populus ...	[more]

BLAST of CmoCh13G005730 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29930.1	7.5e-136	87.64	chlorophyll A/B binding protein 1	[more]
AT1G29920.1	2.9e-135	87.27	chlorophyll A/B-binding protein 2	[more]
AT1G29910.1	2.9e-135	87.27	chlorophyll A/B binding protein 3	[more]
AT2G34430.1	2.9e-135	86.84	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT2G34420.1	1.0e-132	86.52	photosystem II light harvesting complex gene B1B2	[more]

BLAST of CmoCh13G005730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068394\|ref\|XP_008444193.1\|	8.3e-145	96.98	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo]	[more]
gi\|449459364\|ref\|XP_004147416.1\|	4.6e-143	95.47	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis sativus...	[more]
gi\|255567270\|ref\|XP_002524616.1\|	2.3e-142	93.96	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Ricinus communis]	[more]
gi\|659078310\|ref\|XP_008439659.1\|	3.9e-142	94.34	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo]	[more]
gi\|255557387\|ref\|XP_002519724.1\|	3.9e-142	93.96	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G005730.1	CmoCh13G005730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..265 score: 1.0E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 66..231 score: 3.1
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 58..257 score: 3.8
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 48..262 score: 1.15
None	No IPR available	PANTHER	PTHR21649:SF26	CHLOROPHYLL A-B BINDING PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 1..265 score: 1.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G005730	Cucsa.212260	Cucumber (Gy14) v1	cgycmoB0614
CmoCh13G005730	CmaCh13G005410	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G005730	Cla019595	Watermelon (97103) v1	cmowmB174
CmoCh13G005730	Csa1G445860	Cucumber (Chinese Long) v2	cmocuB190
CmoCh13G005730	MELO3C002727	Melon (DHL92) v3.5.1	cmomeB179
CmoCh13G005730	ClCG03G006930	Watermelon (Charleston Gray)	cmowcgB185
CmoCh13G005730	CSPI01G21270	Wild cucumber (PI 183967)	cmocpiB194
CmoCh13G005730	Cp4.1LG10g05840	Cucurbita pepo (Zucchini)	cmocpeB186
CmoCh13G005730	MELO3C002727.2	Melon (DHL92) v3.6.1	cmomedB201
CmoCh13G005730	CsaV3_1G032510	Cucumber (Chinese Long) v3	cmocucB0223
CmoCh13G005730	CsGy1G020980	Cucumber (Gy14) v2	cgybcmoB059

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G005730	Wax gourd	cmowgoB0241
CmoCh13G005730	Wax gourd	cmowgoB0244
CmoCh13G005730	Cucurbita moschata (Rifu)	cmocmoB170
CmoCh13G005730	Cucurbita moschata (Rifu)	cmocmoB183
CmoCh13G005730	Cucurbita moschata (Rifu)	cmocmoB190
CmoCh13G005730	Cucumber (Gy14) v1	cgycmoB0033
CmoCh13G005730	Cucurbita maxima (Rimu)	cmacmoB398
CmoCh13G005730	Cucurbita maxima (Rimu)	cmacmoB638
CmoCh13G005730	Cucurbita maxima (Rimu)	cmacmoB847
CmoCh13G005730	Wild cucumber (PI 183967)	cmocpiB218
CmoCh13G005730	Cucumber (Chinese Long) v2	cmocuB215
CmoCh13G005730	Melon (DHL92) v3.5.1	cmomeB195
CmoCh13G005730	Watermelon (Charleston Gray)	cmowcgB176
CmoCh13G005730	Watermelon (97103) v1	cmowmB188
CmoCh13G005730	Cucurbita pepo (Zucchini)	cmocpeB182
CmoCh13G005730	Cucurbita pepo (Zucchini)	cmocpeB199
CmoCh13G005730	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G005730	Bottle gourd (USVL1VR-Ls)	cmolsiB189
CmoCh13G005730	Bottle gourd (USVL1VR-Ls)	cmolsiB197
CmoCh13G005730	Cucumber (Gy14) v2	cgybcmoB708
CmoCh13G005730	Melon (DHL92) v3.6.1	cmomedB217
CmoCh13G005730	Silver-seed gourd	carcmoB0406
CmoCh13G005730	Silver-seed gourd	carcmoB0569
CmoCh13G005730	Silver-seed gourd	carcmoB0993
CmoCh13G005730	Silver-seed gourd	carcmoB1080
CmoCh13G005730	Silver-seed gourd	carcmoB1279
CmoCh13G005730	Cucumber (Chinese Long) v3	cmocucB0254
CmoCh13G005730	Watermelon (97103) v2	cmowmbB196
CmoCh13G005730	Watermelon (97103) v2	cmowmbB210