CmoCh13G004200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G004200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Agamous-like MADS-box protein A
Location	Cmo_Chr13 : 5216891 .. 5219640 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTTTGCGGTATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTGTCGTCGGGCTCGAGAGGGTTCTCGCTAAGTTCAAAAGTCTTTCGGAGATGGAGCAATGCAATAAGATGGTGAACCAAGAGACCTTCCTCCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGGGAGAATCGTGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCGCCACGAGATCTCAATATCATTGATTTGTATGATCTCGTTTGGTTTGTTGATGAGACAATGACTGATGTTTGTAAGAGGATTGAGTTGCTTACGACAACTATGACCGAACCGCCGGTTGGGTCGGCGGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGGAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGGTGCATTTTGGTCAAACAATGGCTCTCCTTGAAAAGGAATTGTGTTGGGGTTGGTCTTTAAATTTTTAAGCTTAGATTCACAATGTTTTTTTAGGGTTTAAACTCGAAGAGGGTGAAGAACCTTTTCTCGTCTCTCTTCGTCAATAAATAATTGATCGGGTGTTAATTGGGTTGTACGGGTTTATGTTCTTACATTTTTTGTAACGACCCTAGATTTCTACCTACCTGAGTCGCTACGATCATCATAGCGTGATCATTTCTTTGCGCAAATAAACGTTTGAACTTCTTCGTAAGACATAAAGTTCATCTTAGAACACTATTACGTACTTACGTGTTCGAAAACATCTTTAAAATGACACAACGAAATAAATAAACATTTAAATAAAAGAACATCATATTTTAACGTAAGTTTAAGAAAATAAATGCAACTACCATATGCATGTGTCATGGTCTCTAGTTGCGATGTCGTTATTAATGTACAGTGATGTCTTGCCCTTACTTGAAATAGAAGTAGCATGTAAGTGACCACACTGTTGGGGTTAGATGCAAACTCGTACAATCATGAGTGAGACCTATCATATCAGTCTATATTCGTTAGGCAGCTATCCGAGCTGATTGGATGTGTATTTATTAATCTACACACGGTCTACACGTGCGAGTATAAACTCACAAGTCGATTCGCACACCTCCTAGACCTCTTTCTTGTTGGACGAGCATTCTCTAGTAGTTGTTGATGTCAGACACCCATTAGGAATAGCGACCGTCGGCATTATGATAAACATAATAATCATGTCCGTACTATATTTTATCTTCACGTATCATACCTTGATTATATCATAAAACACAACATATCATTCACATATCGTACCATCCACATATCATATCATAACATATATCTTATCATTCTTGTATCATATCTCAAATATATCATAAAACGCATCGTATATCATAACATTTACATATCATAACGTTTACGTAACATATCATAGTCATATCGTTTCATAAATATTTCACACACGTCCAGCATATGACACATGCAAAACCACGAGACAAGTGTCATCACACAACATCCATTTTAACTGAACTGATAGTAACACTACTTACTTGAATGACCTTAGCCGAAGTTCTGTCTAATTCCAAATTAGCTTGCTTTCGTCCCTCGAATTTGTTACCATTTATGTCAAAGCGCTTCACCCTATTAAAAACGTTCGCCTAATTCCTTCAATAATTCTAATTCCTAAATTTTGTTAAGTATTCAATAAATTCTTAATCTTTCAATTTCGACTTAATGTTTCTTTGTACATAAATATATCTAACAACATACCATGTATTAGATATTATGATTTCATAATATATTCGAGAATTACTTTATAAATGAAATATATGTTTTGTTATAATATTATATCCGCTGGGAACCGACCATTTAATACGGGTAAGATCTTCCATTTTCTTTCTCTATGACTTAATTGTAACAAAACTGATGAAAACAATATCGCTACTACATGCATACATTTTATGTTTAAAAATTGTCATGAATTAAAAAAAAAAACGTGCAAACACGGTAAAAATATAATTGAAGTAGTAAAGAAAACTTCCCGTATCAAGGTTCAAAGATGAAATTACGATTAAACTATCTTAACAGTGGAACTATAGCATAAATACGAAAAATTATCTGGCGTGACCTCATCTAGCATCGTCATTCGTACATGGGGTCTTTGCTTAGTATTTAAAAATACACAATAAATGATTCCAGTGTCGGAATCAAAAAATGCAATCACATGTAACATGTTCATGCCGATGGAACGTGCTTTCGTAATTGTAAAAGAATTAATATATGGGGAATTAAAATACAACCAAGGTGATAAGAATTCGATTAATTAAGTTTCATCTGAAGCTGTCAATACACAACACACCAAAACCCATTTCTTAATTTTTGAGAAAGAAGGTGAAACTGCTATGATCTTTAGCCCCTTCAATTCCTAACCTGACCTCTGGCCCTCCGCCGTGGGGCTCTAGAGGGTTGTCTCTAAGTTCGAAAGCCTGCCGGAGATGGAGCAATGCAATAAGATGGTCAACCAAGAGGCATTCCTTCACGACCGCATCTCCTAGGGCTGCCGAGCAACTCGAGAAGTAG

mRNA sequence

ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTTTGCGGTATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTGTCGTCGGGCTCGAGAGGGTTCTCGCTAAGTTCAAAAGTCTTTCGGAGATGGAGCAATGCAATAAGATGGTGAACCAAGAGACCTTCCTCCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGGGAGAATCGTGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCGCCACGAGATCTCAATATCATTGATTTGTATGATCTCGTTTGGTTTGTTGATGAGACAATGACTGATGTTTGTAAGAGGATTGAGTTGCTTACGACAACTATGACCGAACCGCCGGTTGGGTCGGCGGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGGAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGCCCCTTCAATTCCTAACCTGACCTCTGGCCCTCCGCCGTGGGGCTCTAGAGGGTTGTCTCTAAGTTCGAAAGCCTGCCGGAGATGGAGCAATGCAATAAGATGGTCAACCAAGAGGCATTCCTTCACGACCGCATCTCCTAGGGCTGCCGAGCAACTCGAGAAGTAG

Coding sequence (CDS)

ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTTTGCGGTATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTGTCGTCGGGCTCGAGAGGGTTCTCGCTAAGTTCAAAAGTCTTTCGGAGATGGAGCAATGCAATAAGATGGTGAACCAAGAGACCTTCCTCCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGGGAGAATCGTGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCGCCACGAGATCTCAATATCATTGATTTGTATGATCTCGTTTGGTTTGTTGATGAGACAATGACTGATGTTTGTAAGAGGATTGAGTTGCTTACGACAACTATGACCGAACCGCCGGTTGGGTCGGCGGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGGAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGCCCCTTCAATTCCTAACCTGACCTCTGGCCCTCCGCCGTGGGGCTCTAGAGGGTTGTCTCTAAGTTCGAAAGCCTGCCGGAGATGGAGCAATGCAATAAGATGGTCAACCAAGAGGCATTCCTTCACGACCGCATCTCCTAGGGCTGCCGAGCAACTCGAGAAGTAG

Homology

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BLAST of CmoCh13G004200 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.6e-44
Identity = 92/170 (54.12%), Postives = 134/170 (78.82%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YI+ND++RKATFKKRKKGLMKK+ EL+TLCGI ACAII+SP+++ P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
             G++RV+++F++L EM+Q  KMV+QE FL+ RIAKAT+ L++ ++++RE E+T +MF+ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAV 171
           L+ G      LNI+DL DL + +++ + DV +RIE+L  + TE    S+V
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSV 169

[Close]

BLAST of CmoCh13G004200 vs. Swiss-Prot
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.1e-36
Identity = 83/179 (46.37%), Postives = 120/179 (67.04%), Query Frame = 1


Query: 3   RKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVV 62
           ++K+KL+ I N  +RK TF KRKKG+ KKLTEL TLCG+EACA+++SPFNS P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLV 122
           G+E V++KF  LS +++  KMV+QETF+  RIAK  +QL+KL+ EN   +I  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELL------TTTMTEPPVGSAVEPSWF 176
            G T   +L+  DL DL  ++D+ +  + +RIE+L      ++++  P V +A  P  F
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLPIVANAAAPVGF 179

[Close]

BLAST of CmoCh13G004200 vs. Swiss-Prot
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-34
Identity = 81/172 (47.09%), Postives = 116/172 (67.44%), Query Frame = 1


Query: 3   RKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVV 62
           R K+KL++I ND+ RK TF KRKKG++KK  EL TLCG++ACA+I SP+NS  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLV 122
           G+E V++KF   S +++  KMV+QETFLR RIAK T++L+KL+ ENR  +I  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELL-----TTTMTEPPVGSA 170
            G      L+  DL DL  F+++ +  V +R+E+L     +++   PP+G A
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGVA 172

[Close]

BLAST of CmoCh13G004200 vs. Swiss-Prot
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-27
Identity = 68/152 (44.74%), Postives = 97/152 (63.82%), Query Frame = 1


Query: 4   KKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVVG 63
           KKVKL+ I N+ +RK +F KRK G+ KKL EL+TLCG++ACA+I+SPF   P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLVA 123
            ++V +KF  +    +  KM++QET L +RI KA +QLK L  ENRE ++ R MF+  V 
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFD-CVE 121

Query: 124 GATPPRDLNIIDLYDLVWFVDETMTDVCKRIE 156
           G       +  DL DL+  ++  +  +  RIE
Sbjct: 122 GKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIE 152

[Close]

BLAST of CmoCh13G004200 vs. Swiss-Prot
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.9e-27
Identity = 67/152 (44.08%), Postives = 97/152 (63.82%), Query Frame = 1


Query: 4   KKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVVG 63
           KKVKL+ I N+ +RK +F KRK G+ KKL EL+TLCG++ACA+I+SPF   P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLVA 123
            ++V ++F  +    +  KM++QET+L +RI KA +QLK L  ENRE ++ R MF+  V 
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFD-CVE 121

Query: 124 GATPPRDLNIIDLYDLVWFVDETMTDVCKRIE 156
           G       +  DL DL   ++  +  +  RIE
Sbjct: 122 GKMSQYHYDAKDLQDLQSCINLYLDQLNGRIE 152

[Close]

BLAST of CmoCh13G004200 vs. TrEMBL
Match: A0A0A0LVU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191680 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.2e-79
Identity = 158/209 (75.60%), Postives = 176/209 (84.21%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YITNDA+RKATFKKRKKGL+KKL ELTTLCGIEACAIIF+P NSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +GL++VL+KFKSL EMEQC KMVNQETFLRDRIAKA DQLKKLQRENREKEITR+MF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMS 180
           LVAGATPP DLN+IDL DL W VD+ M D+ KR+ELLT   +     +  EPSWFMEM++
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATN--EPSWFMEMVN 180

Query: 181 HGAYD-DQMGFKIWDDVIQLPN---DDNH 206
            GA D D MGF I DDVIQLP+   DDNH
Sbjct: 181 QGANDEDHMGFNIGDDVIQLPSFGEDDNH 207

[Close]

BLAST of CmoCh13G004200 vs. TrEMBL
Match: A0A0A0LVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-53
Identity = 120/215 (55.81%), Postives = 155/215 (72.09%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YI ND+ARKAT+KKRK+GLMKK++EL+TLCGIEACAIIFSP++SQP+LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +G++RVL++FK + EMEQ  KMVNQETFLR RIAKA +QLKK++++NREKEITRLMF+S
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELL------------TTTMTEPPVGS 180
           L A A     LN++DL DL W +D+ + D+  RI+ L                 + P   
Sbjct: 121 LTA-AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQ 180

Query: 181 AVEPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDD 204
               +W ME++S     DQMGF + DD++ LP  D
Sbjct: 181 PQTAAWLMELVSP---QDQMGF-VGDDML-LPFGD 209

[Close]

BLAST of CmoCh13G004200 vs. TrEMBL
Match: D7UAA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00300 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 8.2e-51
Identity = 115/238 (48.32%), Postives = 157/238 (65.97%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YITND+ARKATFKKRKKGLMKK++EL+TLCGI+ACAI++SP++SQP++WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +G++RVLA FK + EMEQ  KMVNQE+FLR RIAK  +QLKK +++NREKEIT++M++S
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAV---------- 180
           L       ++LNI+DL DL W +D+ + D+ KRIE L          +A           
Sbjct: 121 LTGKGL--QNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTG 180

Query: 181 -----------------EPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDDNHAPSIPN 212
                               WF+++++    ++QMGF   DD++    D+NH    PN
Sbjct: 181 GKAQEEKPAFDSMDAIQRQQWFVDLVNP---NEQMGF-AGDDMMLPFGDNNHNALWPN 232

[Close]

BLAST of CmoCh13G004200 vs. TrEMBL
Match: A0A0B2PM80_GLYSO (Agamous-like MADS-box protein AGL80 OS=Glycine soja GN=glysoja_032209 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.8e-50
Identity = 107/204 (52.45%), Postives = 148/204 (72.55%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL +I ND+ARKATFKKRKKGLMKK++EL+TLCGI+ACAI++SP++ QP++WPS
Sbjct: 1   MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +G++RVLAKF+ + E+EQ  KMVNQE+FLR RI KA DQLKK +++NREKE+TRLMF+ 
Sbjct: 61  PMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTRLMFQY 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPP---VGSAVEPSWFME 180
           L AG     +++++DL DL W +D+ + D+ +RIE+LT      P     +  +    +E
Sbjct: 121 LSAGKI-MHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQPQIAAPAVTDVVAKVE 180

Query: 181 MMSHGAYDDQMGFKIWDDVIQLPN 202
               G+     GF I  D++Q  N
Sbjct: 181 DKGQGSQHGHQGFDINMDLMQKQN 203

[Close]

BLAST of CmoCh13G004200 vs. TrEMBL
Match: I1MZG2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G042000 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.4e-50
Identity = 106/204 (51.96%), Postives = 149/204 (73.04%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL +I ND+ARKATFKKRKKGLMKK++EL+TLCGI+ACAI++SP++ QP++WPS
Sbjct: 1   MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +G++RVLAKF+ + E+EQ  KMVNQE+FLR RI KA DQLKK +++NREKE+T+LMF+ 
Sbjct: 61  PMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTQLMFQY 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPP---VGSAVEPSWFME 180
           L AG     +++++DL DL W +D+ + D+ +RIE+LT      P     +  + +  +E
Sbjct: 121 LSAGKI-MHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQPQIAAPAVTDVAAKVE 180

Query: 181 MMSHGAYDDQMGFKIWDDVIQLPN 202
               G+     GF I  D++Q  N
Sbjct: 181 DKGQGSQHGHQGFDINMDLMQKQN 203

[Close]

BLAST of CmoCh13G004200 vs. TAIR10
Match: AT5G48670.1 (AT5G48670.1 AGAMOUS-like 80)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-45
Identity = 92/170 (54.12%), Postives = 134/170 (78.82%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YI+ND++RKATFKKRKKGLMKK+ EL+TLCGI ACAII+SP+++ P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
             G++RV+++F++L EM+Q  KMV+QE FL+ RIAKAT+ L++ ++++RE E+T +MF+ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAV 171
           L+ G      LNI+DL DL + +++ + DV +RIE+L  + TE    S+V
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSV 169

[Close]

BLAST of CmoCh13G004200 vs. TAIR10
Match: AT1G65300.1 (AT1G65300.1 AGAMOUS-like 38)

HSP 1 Score: 152.1 bits (383), Expect = 4.6e-37
Identity = 83/179 (46.37%), Postives = 120/179 (67.04%), Query Frame = 1


Query: 3   RKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVV 62
           ++K+KL+ I N  +RK TF KRKKG+ KKLTEL TLCG+EACA+++SPFNS P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLV 122
           G+E V++KF  LS +++  KMV+QETF+  RIAK  +QL+KL+ EN   +I  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELL------TTTMTEPPVGSAVEPSWF 176
            G T   +L+  DL DL  ++D+ +  + +RIE+L      ++++  P V +A  P  F
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLPIVANAAAPVGF 179

[Close]

BLAST of CmoCh13G004200 vs. TAIR10
Match: AT1G65330.1 (AT1G65330.1 MADS-box transcription factor family protein)

HSP 1 Score: 148.3 bits (373), Expect = 6.6e-36
Identity = 81/172 (47.09%), Postives = 116/172 (67.44%), Query Frame = 1


Query: 3   RKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVV 62
           R K+KL++I ND+ RK TF KRKKG++KK  EL TLCG++ACA+I SP+NS  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLV 122
           G+E V++KF   S +++  KMV+QETFLR RIAK T++L+KL+ ENR  +I  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELL-----TTTMTEPPVGSA 170
            G      L+  DL DL  F+++ +  V +R+E+L     +++   PP+G A
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGVA 172

[Close]

BLAST of CmoCh13G004200 vs. TAIR10
Match: AT5G26630.1 (AT5G26630.1 MADS-box transcription factor family protein)

HSP 1 Score: 147.9 bits (372), Expect = 8.7e-36
Identity = 84/194 (43.30%), Postives = 124/194 (63.92%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTR+KVK+T+I N+ ARK+TFKKRKKGL+KK  EL  LCG+   A++ SP+   P++WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
                +V++++K++S M++  KMVNQETFL+ RI KAT+  KKL++EN+E E+  +MF+ 
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEP---------PVGSAVE 180
           L +G T    +   +L D  + +++ + DV +RIE+L     EP         P  S+V 
Sbjct: 121 L-SGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRN-NEPSSALVPVAAPTTSSVM 180

Query: 181 PSWFMEMMSHGAYD 186
           P   M   S G YD
Sbjct: 181 PVVEMGSSSVGFYD 192

[Close]

BLAST of CmoCh13G004200 vs. TAIR10
Match: AT3G05860.1 (AT3G05860.1 MADS-box transcription factor family protein)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-30
Identity = 67/150 (44.67%), Postives = 103/150 (68.67%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKK+ L+YITN++ RKATF KRKKGL+KK+ EL+ LCGIEACA+I+SPFNS P++WPS
Sbjct: 1   MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
              ++ V+  F+ L+++EQ  KMV+ E F+R  I+K  +   K   +N E+ +   MF+ 
Sbjct: 61  NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQ- 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDV 151
           L++G     +L   +  DL  ++D+ + ++
Sbjct: 121 LLSGKGEKLNLTDRNREDLCKYIDQYLKEL 149

[Close]

BLAST of CmoCh13G004200 vs. NCBI nr
Match: gi|449443708|ref|XP_004139619.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 4.6e-79
Identity = 158/209 (75.60%), Postives = 176/209 (84.21%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YITNDA+RKATFKKRKKGL+KKL ELTTLCGIEACAIIF+P NSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +GL++VL+KFKSL EMEQC KMVNQETFLRDRIAKA DQLKKLQRENREKEITR+MF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMS 180
           LVAGATPP DLN+IDL DL W VD+ M D+ KR+ELLT   +     +  EPSWFMEM++
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATN--EPSWFMEMVN 180

Query: 181 HGAYD-DQMGFKIWDDVIQLPN---DDNH 206
            GA D D MGF I DDVIQLP+   DDNH
Sbjct: 181 QGANDEDHMGFNIGDDVIQLPSFGEDDNH 207

[Close]

BLAST of CmoCh13G004200 vs. NCBI nr
Match: gi|659118120|ref|XP_008458956.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 6.6e-78
Identity = 157/209 (75.12%), Postives = 174/209 (83.25%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YITNDA+RKATFKKRKKGL+KKL ELTTLCGIEACAIIF+P NSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +GL++VL+KFKSL EMEQC KMVNQETFLRDRIAKA DQLKKLQRENREKEITRLMF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMS 180
           LVAGATPP DLN+IDL DL W VD+ M D+ KR+E LT   +   V +  EPSWFMEM++
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATN-EPSWFMEMVN 180

Query: 181 HGAYD-DQMGFKIWDDVIQLPN---DDNH 206
            G  D D MGF I DDVIQLP+    DNH
Sbjct: 181 QGGNDEDHMGFNIGDDVIQLPSFGEYDNH 208

[Close]

BLAST of CmoCh13G004200 vs. NCBI nr
Match: gi|659099266|ref|XP_008450513.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 220.3 bits (560), Expect = 3.9e-54
Identity = 121/213 (56.81%), Postives = 155/213 (72.77%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YI ND+ARKAT+KKRK+GLMKK++EL+TLCGIEACAIIFSP++SQP+LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +G++RVL++FK + EMEQ  KMVNQETFLR RIAKA +QLKK++++NREKEITRLMF+S
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELL----------TTTMTEPPVGSAV 180
           L A A     LN++DL DL W +D+ + D+  RI+ L                PP     
Sbjct: 121 LTA-AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQPQAQAQAQAPPTTQPQ 180

Query: 181 EPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDD 204
             +W ME++S     DQMGF + DD++ LP  D
Sbjct: 181 TAAWLMELVSP---QDQMGF-VGDDML-LPFGD 207

[Close]

BLAST of CmoCh13G004200 vs. NCBI nr
Match: gi|449435956|ref|XP_004135760.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 1.9e-53
Identity = 120/215 (55.81%), Postives = 155/215 (72.09%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YI ND+ARKAT+KKRK+GLMKK++EL+TLCGIEACAIIFSP++SQP+LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +G++RVL++FK + EMEQ  KMVNQETFLR RIAKA +QLKK++++NREKEITRLMF+S
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELL------------TTTMTEPPVGS 180
           L A A     LN++DL DL W +D+ + D+  RI+ L                 + P   
Sbjct: 121 LTA-AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQ 180

Query: 181 AVEPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDD 204
               +W ME++S     DQMGF + DD++ LP  D
Sbjct: 181 PQTAAWLMELVSP---QDQMGF-VGDDML-LPFGD 209

[Close]

BLAST of CmoCh13G004200 vs. NCBI nr
Match: gi|225450435|ref|XP_002279507.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera])

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 115/238 (48.32%), Postives = 157/238 (65.97%), Query Frame = 1


Query: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60
           MTRKKVKL YITND+ARKATFKKRKKGLMKK++EL+TLCGI+ACAI++SP++SQP++WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120
            +G++RVLA FK + EMEQ  KMVNQE+FLR RIAK  +QLKK +++NREKEIT++M++S
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAV---------- 180
           L       ++LNI+DL DL W +D+ + D+ KRIE L          +A           
Sbjct: 121 LTGKGL--QNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTG 180

Query: 181 -----------------EPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDDNHAPSIPN 212
                               WF+++++    ++QMGF   DD++    D+NH    PN
Sbjct: 181 GKAQEEKPAFDSMDAIQRQQWFVDLVNP---NEQMGF-AGDDMMLPFGDNNHNALWPN 232

The following BLAST results are available for this feature:

BLAST of CmoCh13G004200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL80_ARATH	3.6e-44	54.12	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1	[more]
PHE2_ARATH	8.1e-36	46.37	MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1	[more]
PHE1_ARATH	1.2e-34	47.09	MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1	[more]
AGL90_ARATH	3.1e-27	44.74	Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2	[more]
AGL36_ARATH	6.9e-27	44.08	Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1	[more]

BLAST of CmoCh13G004200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVU5_CUCSA	3.2e-79	75.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191680 PE=4 SV=1	[more]
A0A0A0LVS3_CUCSA	1.3e-53	55.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1	[more]
D7UAA8_VITVI	8.2e-51	48.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00300 PE=4 SV=...	[more]
A0A0B2PM80_GLYSO	1.8e-50	52.45	Agamous-like MADS-box protein AGL80 OS=Glycine soja GN=glysoja_032209 PE=4 SV=1	[more]
I1MZG2_SOYBN	2.4e-50	51.96	Uncharacterized protein OS=Glycine max GN=GLYMA_18G042000 PE=4 SV=1	[more]

BLAST of CmoCh13G004200 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48670.1	2.1e-45	54.12	AGAMOUS-like 80	[more]
AT1G65300.1	4.6e-37	46.37	AGAMOUS-like 38	[more]
AT1G65330.1	6.6e-36	47.09	MADS-box transcription factor family protein	[more]
AT5G26630.1	8.7e-36	43.30	MADS-box transcription factor family protein	[more]
AT3G05860.1	1.4e-30	44.67	MADS-box transcription factor family protein	[more]

BLAST of CmoCh13G004200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443708\|ref\|XP_004139619.1\|	4.6e-79	75.60	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus]	[more]
gi\|659118120\|ref\|XP_008458956.1\|	6.6e-78	75.12	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo]	[more]
gi\|659099266\|ref\|XP_008450513.1\|	3.9e-54	56.81	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo]	[more]
gi\|449435956\|ref\|XP_004135760.1\|	1.9e-53	55.81	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus]	[more]
gi\|225450435\|ref\|XP_002279507.1\|	1.2e-50	48.32	PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004200.1	CmoCh13G004200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 1.4E-9coord: 38..59 score: 1.4E-9coord: 3..23 score: 1.
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..50 score: 3.2
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 4.3
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..49 score: 17
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..95 score: 1.31
None	No IPR available	unknown	Coil	Coil	coord: 87..114 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..188 score: 1.7
None	No IPR available	PANTHER	PTHR11945:SF183	AGAMOUS-LIKE MADS-BOX PROTEIN AGL80-RELATED	coord: 2..188 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G004200	CmaCh13G003940	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G004200	Cla009013	Watermelon (97103) v1	cmowmB192
CmoCh13G004200	MELO3C021692	Melon (DHL92) v3.5.1	cmomeB179
CmoCh13G004200	ClCG01G010290	Watermelon (Charleston Gray)	cmowcgB177
CmoCh13G004200	Lsi02G010970	Bottle gourd (USVL1VR-Ls)	cmolsiB196
CmoCh13G004200	Cp4.1LG20g06440	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G004200	MELO3C021692.2	Melon (DHL92) v3.6.1	cmomedB201
CmoCh13G004200	Cla97C01G010250	Watermelon (97103) v2	cmowmbB195
CmoCh13G004200	Bhi08G000684	Wax gourd	cmowgoB0246
CmoCh13G004200	Carg25123	Silver-seed gourd	carcmoB1390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G004200	Cucurbita pepo (Zucchini)	cmocpeB182
CmoCh13G004200	Bottle gourd (USVL1VR-Ls)	cmolsiB197
CmoCh13G004200	Cucumber (Gy14) v2	cgybcmoB065
CmoCh13G004200	Cucumber (Chinese Long) v3	cmocucB0228
CmoCh13G004200	Watermelon (97103) v2	cmowmbB200
CmoCh13G004200	Wax gourd	cmowgoB0255
CmoCh13G004200	Wax gourd	cmowgoB0271
CmoCh13G004200	Cucurbita moschata (Rifu)	cmocmoB168
CmoCh13G004200	Cucurbita moschata (Rifu)	cmocmoB170
CmoCh13G004200	Cucurbita maxima (Rimu)	cmacmoB398
CmoCh13G004200	Wild cucumber (PI 183967)	cmocpiB200
CmoCh13G004200	Cucumber (Chinese Long) v2	cmocuB196
CmoCh13G004200	Watermelon (97103) v1	cmowmB184