Cla009013 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009013
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pheres1 (Fragment) (AHRD V1 ***- B2BFM9_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box
Location	Chr1 : 20004936 .. 20005484 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTTACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAAGGCAAGAAGATGGTCAACCAAGAGACGTTCCTCCGCGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATAGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGGGGGGGGGGGGGGGGGGTGGAGCCGTCGTGGTTCATGGAGATGGTGA

mRNA sequence

ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTTACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAAGGCAAGAAGATGGTCAACCAAGAGACGTTCCTCCGCGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATAGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGGGGGGGGGGGGGGGGGGTGGAGCCGTCGTGGTTCATGGAGATGGTGA

Coding sequence (CDS)

ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTTACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAAGGCAAGAAGATGGTCAACCAAGAGACGTTCCTCCGCGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATAGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGGGGGGGGGGGGGGGGGGTGGAGCCGTCGTGGTTCATGGAGATGGTGA

Protein sequence

MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPPRVEAGGGGGGWSRRGSWRW

Homology

[Close]

BLAST of Cla009013 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.0e-48
Identity = 91/157 (57.96%), Postives = 128/157 (81.53%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYI+ND++RKATFKKRKKGL+KK+ EL+TLCGI ACAII+SP+D+  ++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
             G QRV+S+F++LPEM+Q KKMV+QE FL+ RIAKA + L++ ++++RE E+  +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLL 158
           L +G      LN++DLNDLG++++Q + D+N+R+ +L
Sbjct: 121 L-IGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEIL 156

[Close]

BLAST of Cla009013 vs. Swiss-Prot
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-33
Identity = 74/155 (47.74%), Postives = 105/155 (67.74%), Query Frame = 1


Query: 3   RKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTL 62
           ++K+KL+ I N  +RK TF KRKKG+ KKLTEL TLCG+EACA+++SPF+S  + WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLV 122
           G + V+SKF  L  +++ KKMV+QETF+  RIAK  +QL+KL+ EN   +I  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 VGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLL 158
            G T   +L+  DL DL   +D+ +  + +R+ +L
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEIL 155

[Close]

BLAST of Cla009013 vs. Swiss-Prot
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 77/169 (45.56%), Postives = 107/169 (63.31%), Query Frame = 1


Query: 3   RKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTL 62
           R K+KL++I ND+ RK TF KRKKG+LKK  EL TLCG++ACA+I SP++S  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLV 122
           G + V+SKF     +++ KKMV+QETFLR RIAK  ++L+KL+ ENR  +I  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 VGATPPPDLNVIDLNDLGWLVDQTI------VDINKRMGLLTAKQPPRV 166
            G      L+  DL DL   +++ +      V+I K  G  ++  PP +
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPI 169

[Close]

BLAST of Cla009013 vs. Swiss-Prot
Match: AGL86_ARATH (Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana GN=AGL86 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.1e-30
Identity = 72/177 (40.68%), Postives = 101/177 (57.06%), Query Frame = 1


Query: 3   RKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTL 62
           R K+KL+ I N  +R+ TF+KRK G+  KL ELTTLCG++ACA+I SP+++ + +WPST 
Sbjct: 2   RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYENPV-VWPSTE 61

Query: 63  GFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLV 122
           G Q  +S F   P  EQ K M++ ET+L+D+I K   +L+ L+RENRE ++ + MF   V
Sbjct: 62  GVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMF-DCV 121

Query: 123 VGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLT------AKQPPRVEAGGGGGG 174
            G          DL DL   +D  I  +N  + LLT      +  PP +     G G
Sbjct: 122 EGKMSEHQYGARDLQDLSLYIDHYINQLNSSVMLLTNNGASSSSFPPPLHTSVAGAG 176

[Close]

BLAST of Cla009013 vs. Swiss-Prot
Match: AGL92_ARATH (Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-29
Identity = 74/173 (42.77%), Postives = 98/173 (56.65%), Query Frame = 1


Query: 3   RKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTL 62
           R K KL  I +   R+ATF+KR  G+ KKL ELTTLC I+ACA+I+SPF++   +WPST 
Sbjct: 2   RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFENPT-VWPSTE 61

Query: 63  GFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLV 122
           G Q V+S+F   P  E+ K M++ ETFLRD+I K  ++L+ L+RENRE ++   MF   V
Sbjct: 62  GVQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMF-DCV 121

Query: 123 VGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLT------AKQPPRVEAGG 170
            G          DL DL    DQ +  +N R   LT      +  PP  +  G
Sbjct: 122 GGKMSEQQYGARDLQDLSLFTDQYLNQLNARKKFLTEYGESSSSVPPLFDVAG 172

[Close]

BLAST of Cla009013 vs. TrEMBL
Match: A0A0A0LVU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191680 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-71
Identity = 142/165 (86.06%), Postives = 149/165 (90.30%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P +SQ DLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
           TLG Q+VLSKFKSLPEMEQ KKMVNQETFLRDRIAKAADQLKKLQRENREKEI R+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPPRV 166
           LV GATPP DLNVIDLNDLGWLVDQ + DI KRM LLT  +  RV
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRV 165

[Close]

BLAST of Cla009013 vs. TrEMBL
Match: A0A0A0LVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.5e-56
Identity = 113/160 (70.62%), Postives = 135/160 (84.38%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYI ND+ARKAT+KKRK+GL+KK++EL+TLCGIEACAIIFSP+DSQ +LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
            +G QRVLS+FK +PEMEQ KKMVNQETFLR RIAKA +QLKK++++NREKEI RLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAK 161
           L   A     LN++DLNDLGWL+DQ + DI  R+  L  K
Sbjct: 121 L-TAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIK 159

[Close]

BLAST of Cla009013 vs. TrEMBL
Match: V4SWL0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013728mg PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 110/158 (69.62%), Postives = 137/158 (86.71%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYI+ND+ARKATFKKRKKGLLKK++EL+TLCGI+ACAIIFSP+DSQ ++WPS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSPYDSQPEVWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
            LG QRVLS+FK +PEMEQ KKMVNQ++FLR RIAKA +QLKK +++NREKEI ++MFQS
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQDSFLRQRIAKANEQLKKQRKDNREKEITQVMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLT 159
           L   A    +LN++DLNDLGWL++Q + +I KRM  L+
Sbjct: 121 LTGKAL--LNLNMMDLNDLGWLIEQNLKEICKRMETLS 156

[Close]

BLAST of Cla009013 vs. TrEMBL
Match: V4S796_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006519mg PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-54
Identity = 110/157 (70.06%), Postives = 136/157 (86.62%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYI+ND+ARKATFKKRKKGLLKK++EL+TLCGI+ACAIIFSP+DSQ ++WPS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSPYDSQPEVWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
            LG QRVLS+FK +PEMEQ KKMVNQ++FLR RIAKA +QLKK +++NREKEI ++MFQS
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQDSFLRQRIAKANEQLKKQRKDNREKEITQVMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLL 158
           L   A    +LN++DLNDLGWL++Q + +I KRM  L
Sbjct: 121 LTGKAL--LNLNMMDLNDLGWLIEQNLKEICKRMETL 155

[Close]

BLAST of Cla009013 vs. TrEMBL
Match: A5BJU9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037765 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 106/163 (65.03%), Postives = 136/163 (83.44%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYITND+ARKATFKKRKKGL+KK++EL+TLCGI+ACAI++SP+DSQ ++WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
            LG QRVL+ FK +PEMEQ KKMVNQE+FLR RIAK  +QLKK +++NREKEI ++M+QS
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPP 164
           L        +LN++DLNDLGW++DQ + DI+KR+  L  +  P
Sbjct: 121 LT--GKGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAHP 161

[Close]

BLAST of Cla009013 vs. NCBI nr
Match: gi|449443708|ref|XP_004139619.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.4e-71
Identity = 142/165 (86.06%), Postives = 149/165 (90.30%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P +SQ DLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
           TLG Q+VLSKFKSLPEMEQ KKMVNQETFLRDRIAKAADQLKKLQRENREKEI R+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPPRV 166
           LV GATPP DLNVIDLNDLGWLVDQ + DI KRM LLT  +  RV
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRV 165

[Close]

BLAST of Cla009013 vs. NCBI nr
Match: gi|659118120|ref|XP_008458956.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 1.4e-71
Identity = 141/161 (87.58%), Postives = 147/161 (91.30%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P +SQ DLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
           TLG Q+VLSKFKSLPEMEQ KKMVNQETFLRDRIAKAADQLKKLQRENREKEI RLMFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQ 162
           LV GATPPPDLNVIDLNDLGWLVDQ + DI KRM  LT  +
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNR 161

[Close]

BLAST of Cla009013 vs. NCBI nr
Match: gi|659099266|ref|XP_008450513.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 2.2e-56
Identity = 114/167 (68.26%), Postives = 138/167 (82.63%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYI ND+ARKAT+KKRK+GL+KK++EL+TLCGIEACAIIFSP+DSQ +LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
            +G QRVLS+FK +PEMEQ KKMVNQETFLR RIAKA +QLKK++++NREKEI RLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPPRVEA 168
           L   A     LN++DLNDLGWL+DQ + DI  R+  L     P+ +A
Sbjct: 121 L-TAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQPQA 166

[Close]

BLAST of Cla009013 vs. NCBI nr
Match: gi|449435956|ref|XP_004135760.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 5.0e-56
Identity = 113/160 (70.62%), Postives = 135/160 (84.38%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYI ND+ARKAT+KKRK+GL+KK++EL+TLCGIEACAIIFSP+DSQ +LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
            +G QRVLS+FK +PEMEQ KKMVNQETFLR RIAKA +QLKK++++NREKEI RLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAK 161
           L   A     LN++DLNDLGWL+DQ + DI  R+  L  K
Sbjct: 121 L-TAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIK 159

[Close]

BLAST of Cla009013 vs. NCBI nr
Match: gi|567871503|ref|XP_006428341.1| (hypothetical protein CICLE_v10013728mg [Citrus clementina])

HSP 1 Score: 220.3 bits (560), Expect = 2.7e-54
Identity = 110/158 (69.62%), Postives = 137/158 (86.71%), Query Frame = 1


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPS 60
           MTRKKVKLAYI+ND+ARKATFKKRKKGLLKK++EL+TLCGI+ACAIIFSP+DSQ ++WPS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSPYDSQPEVWPS 60

Query: 61  TLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQS 120
            LG QRVLS+FK +PEMEQ KKMVNQ++FLR RIAKA +QLKK +++NREKEI ++MFQS
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQDSFLRQRIAKANEQLKKQRKDNREKEITQVMFQS 120

Query: 121 LVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLT 159
           L   A    +LN++DLNDLGWL++Q + +I KRM  L+
Sbjct: 121 LTGKAL--LNLNMMDLNDLGWLIEQNLKEICKRMETLS 156

The following BLAST results are available for this feature:

BLAST of Cla009013 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL80_ARATH	5.0e-48	57.96	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1	[more]
PHE2_ARATH	2.0e-33	47.74	MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1	[more]
PHE1_ARATH	1.1e-31	45.56	MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1	[more]
AGL86_ARATH	6.1e-30	40.68	Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana GN=AGL86 PE=1 SV=1	[more]
AGL92_ARATH	2.3e-29	42.77	Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1	[more]

BLAST of Cla009013 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVU5_CUCSA	1.0e-71	86.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191680 PE=4 SV=1	[more]
A0A0A0LVS3_CUCSA	3.5e-56	70.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1	[more]
V4SWL0_9ROSI	1.9e-54	69.62	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013728mg PE=4 SV=1	[more]
V4S796_9ROSI	2.5e-54	70.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006519mg PE=4 SV=1	[more]
A5BJU9_VITVI	3.2e-54	65.03	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037765 PE=4 SV=1	[more]

BLAST of Cla009013 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443708\|ref\|XP_004139619.1\|	1.4e-71	86.06	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus]	[more]
gi\|659118120\|ref\|XP_008458956.1\|	1.4e-71	87.58	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo]	[more]
gi\|659099266\|ref\|XP_008450513.1\|	2.2e-56	68.26	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo]	[more]
gi\|449435956\|ref\|XP_004135760.1\|	5.0e-56	70.63	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus]	[more]
gi\|567871503\|ref\|XP_006428341.1\|	2.7e-54	69.62	hypothetical protein CICLE_v10013728mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009013	Cla009013.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 4.0E-10coord: 3..23 score: 4.0E-10coord: 38..59 score: 4.0
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..50 score: 6.1
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 1.9
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..49 score: 17
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..95 score: 1.57
None	No IPR available	unknown	Coil	Coil	coord: 87..114 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..161 score: 2.3
None	No IPR available	PANTHER	PTHR11945:SF183	AGAMOUS-LIKE MADS-BOX PROTEIN AGL80-RELATED	coord: 2..161 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009013	Cla97C01G010250	Watermelon (97103) v2	wmwmbB239
Cla009013	ClCG01G010290	Watermelon (Charleston Gray)	wcgwmB146
Cla009013	CmaCh13G003940	Cucurbita maxima (Rimu)	cmawmB205
Cla009013	CmoCh13G004200	Cucurbita moschata (Rifu)	cmowmB192
Cla009013	Cp4.1LG20g06440	Cucurbita pepo (Zucchini)	cpewmB517
Cla009013	Carg25123	Silver-seed gourd	carwmB1040

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009013	Cucumber (Chinese Long) v3	cucwmB057
Cla009013	Wax gourd	wgowmB501
Cla009013	Wax gourd	wgowmB505
Cla009013	Melon (DHL92) v3.5.1	mewmB168
Cla009013	Cucumber (Chinese Long) v2	cuwmB051
Cla009013	Cucurbita pepo (Zucchini)	cpewmB041
Cla009013	Bottle gourd (USVL1VR-Ls)	lsiwmB201
Cla009013	Cucumber (Gy14) v2	cgybwmB051
Cla009013	Melon (DHL92) v3.6.1	medwmB154