CmoCh13G003680 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003680
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNuclear speckle splicing regulatory 1
LocationCmo_Chr13 : 4704466 .. 4711485 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCAGTTTCACGGCGGCTCCCCCTCCTTCGGATCAGGCACTGCCGTTCTGCTCCCTTTTTCATCTCTGGATCTCAGGTATTCTTCTTAATTCCCATCTCTGTCTTTCAATCTTTCTTGTTTTTCTATATTTTGAATCCAATCGTCTGGTTTCGTTGTAACCGATTTTGCTCCTCAATGGGTTCATCCGATTTCTCACTCGAATATCAGCTTCAATTTACTTCTGGCCTGTTTGGAATTGCCAAAATCACTTTTGCAATTGCGCAGAGGATGAAATTGATTTTTGAAGTGTTAGTTGGTAGATGATTTTTGATAGGGTGACTGACCTGAAATCAGCTCCAAAATTTACCTGGATTTTATTCAGCTTGCCCATAAATATAAAAACACGATTCTCAGCCCTGAACAATTTCTTTGCTTTCGATTTTTTCGGCTTTCTCTCACCATTGTAGCATCTTCAGAGGACTCTTTCATCTCTGGCCGCTTTCTCTCTCGTTCTGCTGATCATTTCGTTGGTTTTCGCTGGTAGTTGTTAGCTTCAATCTTGTTTGGGTTTTGGACGTGTGGTTTCCACATTGATTGTGATCTGTTTGCATTATTCTTAAATTTTTGAACTAGGTTTTCAATTTGTTTATGTAATTTTGACCGGTGGTTTTGATTTGTGTTTCGTTTTGAACTAGGTTTTCGATTTGTTCCGTAATTGCTTCATTGATTAGGTTGCCAATTGTGTTTGTTTTTCTTACTTTTGATTGGCGGTGTGTTTCTGGAATTTGACGGCAGTGAGTTTTGTTTCTTTGGTGTGTTTTTGTTTGTGCTTTTGGTGGTATTGCATTGCTGGAGTTTGCCTTCATTTGTGAAGCTTTTCTGTTTTCGATTTTGATCTTACTGATGGGGCTTTTTTTTGTTAATTGTATATATGAAAATCCTTGTTGGAGCATTGTTAGTTGGAAGCTTTTGGCTACCATTATATTTCTAGGGAGCTTTTCTTTGGTTGTCATTGTTTTGATTGTGGTAAGATCAGTAATCTTCTACCATTTTGTTTCCTTCTCATCCTCCTCATCTTCCTCCTCATCTGATCAATAATCTTACCTCTCTTTCTACTTTTGCTTCTGTTTTTTGTGAATAGTTCATTTAGCTATATATATACTTTTTTTTTTTATCATAATTCTGGTGTGAATAGTTAATTTAAGTTAACAAATATTATATGTAAATCACTTCAAACCAAACATTCAAATGGCTATATGAAAATCACTTTGACAAAACCAATTGTAATTAGATATAATTTTATGAAATCACTGATACTACATGCCCTTCATGATTAAACCCATTTGAGTTTGAGCATGCTTGTTCTATCCCGTTTGGTTTTGTGTTCAACTCAATTCGGATTTTACACTTCTTCAGTTCTTATTTGTTTCCATCTTATTGGTTTTTTTGTTTCTCATGTTCTTCATTTTTGCGTGCAATCTTTTTCTGTTCTTAATCTCTTCGATTTGATTATTCTTTTTCTTCTCTTTTTGCACTTGTCCTATTGCCCTAGATTTCAATTTCATTTTCTCTGTTCTCTTCAATTTTGATTTTGCAAGTCCAGTCATCATCTCCACCAAGTGTTTTTCCAATTCCACCTGTGGTCATCTAGTCCCTGAACCCATATCAAATTGCTCTGGCTAATTTTATTGGAACAAAGGATTGAAATAGAAATTGTACTGAAAACTTGAATAACCAAAAAGGAAAAAGAAAAAGAAAAGGAAAATTTTCCAAAGCAACTTAGAGGGACCTCAACGTGAGCCAGTTGAAGCTAAGACAAAAAAATACACTTTTGGTATCTCAGGTTTGAGTTTTGTAGCATTTAGGTACTTAGTTTTCAAACTCAACAATTTAGTCCACGAGTTTGGATTTAGTTGCATTTTCGTTCTTCCGTCCAAATATTCGTCAATTATTAATGGAATGTTAGATGTAACATTTTTTATTAAAATTTTTTAATTTCTTGAAATAAAATTTTCTTTTTCCTTCTCTCCCTTCTCTTCTCTCATCTTTCTCCCTCCTCCTCACATCCTCCTCCTTCCATGGCTGCTGTTGCCGTCCACCATCATCACAACTAGTTGCCTCTTTCGACAGACCATAATGACAATCCGATAGCCTTTGATTGGCGGTGACAAACATAGCTTGCACACCCATGGCTTTACGACCCACTGATGATAACAATCCCTTAAATTTGTGACTCTAACCACTCCTCCCAATTGACGGTGACTTGACAATACTCACGAATTGGTCTGGCAAGGCAGTGGAAACCTGTGAGCTAATCCAGATTTCAGATCTGGAACAAACCCAAATCTGATTCTAGGAGGTGACCGTTGATGGCTTTGTTGTGAGGGGGCAATGACTGACAGTGCAAGTGAGAAGAGGCATCGTTTGACGACTTTGCTGCTGCAAAGATTATTCCTTGACGGAGCTGCTGCTGCGAATGTGCAACTATCAAAAGAGAAATAGATGAAGATAAAAGAGGGAGAGTGTAACAGCAGTAATACATTGGATCCCATCCGAATTCCGCAGTTAAGCGTGCTTGGGGCAAGAGTAGTACTAAGTTGGGTGACCACTTGGGCAGTCCTAGGCCATGTGGCCCTCCTTTCCGCACCAAAAACATTGACCCCAATGATTCTTTCCACATGGTCCTGTCGTCTTGTCTGTTTTCACTTCCCTGTTGACCACGCCTAAAATCGCGGCATTATCTGTTTGGTCGTCTCTGTGGCTGTGATGGAGACGAATCATGACGGTCAATCTGGTTATGACGTCGCTTCTGTCCCACTGTTGATGAAAGGGGTTCACGAGAACTATCAGCTCCCTCCATGGCCTTAGCTATTCTCAGTGTGGCAGCATAGGTAGTAGGCATTATCGCCTCAACAATATTGTAGATCCTCTTGTCTAACCCCAACACAAACTGCCTTGCTATTCTGTAGTCAGTGTCCACCAACTCCGAGGCGAAGCGATTCAACTTGGAAAACTCTTCAGCGTATGTGGTAACAGAACGCCCCCTTTGACACAACTACACAACTGGGTGAACTCTTGCTGTTTGCGAAGTTGAATATCCTCTGGGCAATACTCATCAATAAAAGCACCCTTGAATTTCGCCCACGAGATTGCACCTCCCTCAAGACTAATAATCTCGCGGGTGGATTGCTACTATAGTTTTGCATCATCTCGCAGCATGAATGCTGCACACTCCACCTTCTGATCTTTAGGATAGTTGGTCAAACACAAACACAGTCTATAGATCTCAGCCACATTTGTGCTACAGTCGGATCATTAGAAGTTCCCTTAAAGGCATGAGGGTCACCCATGCAAGCACCTTGCTTCCTTGGTCGATGATGAAGCATTTGCTTGTTGATTAACAGTTAGTTTTGTATAATAGTTTGCAATGCGTCCACCAGAGCAGCTGTTGAGTCTGGTGCGACCTGAGGTACCGCTGGTAGTGGGAATGACACAACTACATCAGGCTAATCTATGGAATCCTTGTGTTCTGAAGCTCGTCCTCTTCCATCCCTTCCTCTACCCCTAAGTGGGGGTCGTCCCCTAATATCTCCTCCTTGAGTTCTAGGTGACATATTTATACAAAGCACGTAACTACTAAGTCACATACTTATCTATCAGGTTCTATAAACATTCATAATAATACAAGCCACAAATACATACAGTCATAGCTTAAACATAGTCATCATACATGCCATTTCATATTTAGTCTTACCACATCATAAATCATGCTAACATTTAAAACATGTATATTATATCATACCAAATATCATTTAACTAATTAATTTTAATTCTTAAAAGGCATACCTGATGGCAACGGTGCGTTTGCGGGAGGACCATGTAAGTACACTAGAGTAGGCTGGTTTACAAGATCTATAAGTTAGGGTTCTAATACCAATGGTAACATCCTTAGTTTTCTTAACCTAATTAGTGATGGCAATCCATTGCATGCTTTAAGTTATAATGCAAAAATTCATATTAAATAACTTTGAAATAAAGCCACGATCTTACATAAATAGTTGAAAACATGGAAATTTAACTTAACTCAAGAAAACATTAACACTCAAATTAGAAATTCAAATGCAACTATTCATCCTCGAAATAAAATCTCAAACAAAACATCTATTGCCCTATTATGCCCCCATTTCAACTTCCATGGTCTTCACAGCATCCACCGTCATCCGTGCGGGAGCCTTGCCTTTACCTGAAAAAAATTATGGTAGCACGTGGTTTGAGTATTTTATGAAATACTCAGTAAGTCACCCCACTGTTGAGGTTAGATATGCAAAACATGAGTGGGATCTATCTTTAATAAAATTTACATAACCTTAGGCTCTTTTCTAGTTCGGGCAGGGTGGGATGTATGGTACTTCCCCACACACGGCCCATGTACATGCACATGGGCCCACTAGGCGGACTCATATACTACACCTGGACATGACTTGGTCAGGCACAACGCATTACACGTCACTGGACGCCACAAAAAAGCTAAGGCCTGCATGATTTTATAGCAAACATAAATATCAAACGTGCGTCGTACTATCATAATATAAAGGGGAAGTATCCCGATGCATATGATATACAAACATGCATGAGGTCTCATGATTTACATTTCATGACATAATACTCAATACCTTTCATTACTCTTACGCATTTCATATTATAATTCATGTATGGAACATGTATAAATGACAACATTTTTCAGTCCATCACACTCATTACATATTAGATTTAAATATCATTTATAGCATTTCAATTCATTTCATGAAAATAGGGTAATGGATTAGATGCATACGTAGCAAACATTTCTTATCAATACAAAAATACATAAACATTGCATAACATAGACATTTCACATATAATATGATGCTACAGGAGATGCACCATCATATAATACACTAAGCTAACACCAATAGTAAGGTCTGGTTGATCTTGGCCGAAGTTACTCACGATAAGTTAAATGTTACAATTTATTTATTTATTTATTTTTATTTTTGGAAAACCGAATCGTTACAATTAGGCTGATTATTCGGCTTTTTTTTTTTTTCTTTCCATTTATCTTGTAAACCAAGTCATGAAGGCTATTTTACCGTTTATTCATTGTTGGCCAATATTCTGACAATTTATTTTCCTCATAGCTGCTTTACATTTTCTGCCCATATTTAGCAGCTGACGAGGATTGTAGCCAATGTTTAAGAATTAGGCCATTGTGTTCATACAATCATTCAGGACCTTAAAAAGTATTTTTATTTTGTTTAATCTTTCCTGGTAGAGAATTGGTGTTTTATGCATATGGAAGAATTTTGTATGTTTTATGCATCAATGAGGTACATTCAAGTCTTCACAGGAACAGTTAGACATTAAAAATGAGCAAGTACGGCCTACAACTTAGAGTTAAGCCATCACAGCAGAAACAGCCTACAAGACCGCCCCTTCCTGCTCCTCTTGGATTTCAAGACGACGACGACGACGATGTAGAGAGAGAGATATCCCGACAAGCTTCCAAGAATAAGGCACTTAAGGATGTAAGCTAGCTTGTATATGACTGTGTCATTAACAACAATATCGTGGTCGTATGCTACCCTTAATTTTATTTTTCTCCCTTGAAATATCAATGTAGATCGAGGAGCAACACAAGAAAGCACTAGCGGAAGATCCGTCGGTTTTCGATTACGATGGAGTCTACGATGAAATGAAAGAAAAGGCTGTTCTACCTCGAGCATATGATCGTGAAGAGCGAAAGGTATGTTTATAATTTGATCCCAAACCTGTGTGAAAATACAGTATCACCCTAATATAACGCTCTGCCAGTGTGGTGAAATTACTTATTTGCTCACTGCCTTTTCTATTGCAGCCAAAGTATATTCAAAATTTGATGAAGAAGGCAAAAGAGCGAGAGAGAGAACAGGAAGTTATATATGAAAGAAAACTAGCCAAGGAGAGAAGCAAAGATGATCATCTTTATGCTGGTAAGGACAAATTCGTCACTAGTGCCTACAAAAAGAAACTTGCAGAACAAGCTAAGTGGATGGAGGAAGAACGTCTTCGACAACTTCGAGAGGAGAAAGACGATGTATGCTTTAACTTTGCACACTGTTTCTTTTTCTTTTCGTTTTATAATTTTATAAGTTATTACACTTCGCTAAATGCCCTTCGTGACAAAATGAGCGAGTATAAGTTATTTGTGACTGAACGAGGAACATTGAACCTAACGAGGGTCCTAATATGCCACCACTAATAAGGGTCCTAATATAATCACAAAATGATTTAGGACCCTTGTTAGGAACATTGAAACATTGAAACATTCTTTATAATGGTGTGGAAATTCCTCCCTAGCAGACGAGTTTTAAAAATCTTGAGGGGAAGTCCGGAAGGGAAAGTCTAAAGAAGACAATATCTGTTAACGGTGGGCTTGGATCGTTACAGCAATCTATTATCTTATTCTTGGGTTATCTTAAGAATTGCTTTATGCTTTCGTTAATGTGTGTTTTTCATTGACAGCCAATTGTCTGATTGTTCCTTTCCTTCTAATTTGAAGGTTACCAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCGGTAATGCAGTCGAGCCGAGGGAACCTCCACAGAAGCTTCAATCAGAGAAGCAGGCTGAAGTCCAGAAATTGAAGAAGCATGAAGAGAGTGCTAATGCCGATATCGTTAATGATCATCAGTCACCGAAATACCCCAGCTCGCCTTCCCAGTCAGCAAAGACAATAGAACAGGATCGTCACCTCGAAGAGCACCTTTCGAATTCAAACAAAACAACACCGTCTGATGTACGAGGTACTAGCCCCCCTCCATTACACAATAGAACTCCAGTTGAGAAACAGCCCGAACATGACCAAGGTGAACAACAACCAAAGCGCGATCATCATAAAAGAAGTGAAGATGCTGTCGCTGCTGCAAAAGAGCGATTTTTGGCTCGAAAAAGAACAAAGGAGGTGTGA

mRNA sequence

ACTCAGTTTCACGGCGGCTCCCCCTCCTTCGGATCAGGCACTGCCGTTCTGCTCCCTTTTTCATCTCTGGATCTCAGGAACAGTTAGACATTAAAAATGAGCAAGTACGGCCTACAACTTAGAGTTAAGCCATCACAGCAGAAACAGCCTACAAGACCGCCCCTTCCTGCTCCTCTTGGATTTCAAGACGACGACGACGACGATGTAGAGAGAGAGATATCCCGACAAGCTTCCAAGAATAAGGCACTTAAGGATATCGAGGAGCAACACAAGAAAGCACTAGCGGAAGATCCGTCGGTTTTCGATTACGATGGAGTCTACGATGAAATGAAAGAAAAGGCTGTTCTACCTCGAGCATATGATCGTGAAGAGCGAAAGCCAAAGTATATTCAAAATTTGATGAAGAAGGCAAAAGAGCGAGAGAGAGAACAGGAAGTTATATATGAAAGAAAACTAGCCAAGGAGAGAAGCAAAGATGATCATCTTTATGCTGGTAAGGACAAATTCGTCACTAGTGCCTACAAAAAGAAACTTGCAGAACAAGCTAAGTGGATGGAGGAAGAACGTCTTCGACAACTTCGAGAGGAGAAAGACGATGTTACCAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCGGTAATGCAGTCGAGCCGAGGGAACCTCCACAGAAGCTTCAATCAGAGAAGCAGGCTGAAGTCCAGAAATTGAAGAAGCATGAAGAGAGTGCTAATGCCGATATCGTTAATGATCATCAGTCACCGAAATACCCCAGCTCGCCTTCCCAGTCAGCAAAGACAATAGAACAGGATCGTCACCTCGAAGAGCACCTTTCGAATTCAAACAAAACAACACCGTCTGATGTACGAGGTACTAGCCCCCCTCCATTACACAATAGAACTCCAGTTGAGAAACAGCCCGAACATGACCAAGGTGAACAACAACCAAAGCGCGATCATCATAAAAGAAGTGAAGATGCTGTCGCTGCTGCAAAAGAGCGATTTTTGGCTCGAAAAAGAACAAAGGAGGTGTGA

Coding sequence (CDS)

ATGAGCAAGTACGGCCTACAACTTAGAGTTAAGCCATCACAGCAGAAACAGCCTACAAGACCGCCCCTTCCTGCTCCTCTTGGATTTCAAGACGACGACGACGACGATGTAGAGAGAGAGATATCCCGACAAGCTTCCAAGAATAAGGCACTTAAGGATATCGAGGAGCAACACAAGAAAGCACTAGCGGAAGATCCGTCGGTTTTCGATTACGATGGAGTCTACGATGAAATGAAAGAAAAGGCTGTTCTACCTCGAGCATATGATCGTGAAGAGCGAAAGCCAAAGTATATTCAAAATTTGATGAAGAAGGCAAAAGAGCGAGAGAGAGAACAGGAAGTTATATATGAAAGAAAACTAGCCAAGGAGAGAAGCAAAGATGATCATCTTTATGCTGGTAAGGACAAATTCGTCACTAGTGCCTACAAAAAGAAACTTGCAGAACAAGCTAAGTGGATGGAGGAAGAACGTCTTCGACAACTTCGAGAGGAGAAAGACGATGTTACCAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCGGTAATGCAGTCGAGCCGAGGGAACCTCCACAGAAGCTTCAATCAGAGAAGCAGGCTGAAGTCCAGAAATTGAAGAAGCATGAAGAGAGTGCTAATGCCGATATCGTTAATGATCATCAGTCACCGAAATACCCCAGCTCGCCTTCCCAGTCAGCAAAGACAATAGAACAGGATCGTCACCTCGAAGAGCACCTTTCGAATTCAAACAAAACAACACCGTCTGATGTACGAGGTACTAGCCCCCCTCCATTACACAATAGAACTCCAGTTGAGAAACAGCCCGAACATGACCAAGGTGAACAACAACCAAAGCGCGATCATCATAAAAGAAGTGAAGATGCTGTCGCTGCTGCAAAAGAGCGATTTTTGGCTCGAAAAAGAACAAAGGAGGTGTGA
Homology
[Close]
BLAST of CmoCh13G003680 vs. Swiss-Prot
Match: NSRP1_MOUSE (Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.2e-22
Identity = 100/318 (31.45%), Postives = 158/318 (49.69%), Query Frame = 1 

Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K     QP    L  P  F  D DDD   V   + R+A+K +A+K  + + +
Sbjct: 7   QYGLILPKKT----QPLHRVLQKPSVFGSDSDDDETSVSESLQREAAKKQAMKQTKLEIQ 66

Query: 63  KALAEDPSVFDYDGVYDEMKEKAVL--PRAYDREERKPKYIQNLMKKAKEREREQEVIYE 122
           KALAED +V++YD VYDEM++K     P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDF 182
           +K+ +ER  ++  +  K+ FVTSAYKKKL E+A+  E E+     E   DVTK+ D+S F
Sbjct: 127 KKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGF 186

Query: 183 YFNLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSP 242
           Y +L   +    G    P+   ++ ++  + E  KL+ + +  N++     QS       
Sbjct: 187 YRHL---LNQAVGEEAAPKSSFREARTVIKEE--KLRGYPDETNSESRPPQQSCVLQRGA 246

Query: 243 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHH 302
            ++ +  + DR  ++  S   +     V               K    D G       HH
Sbjct: 247 QEAEENPDADREFDDESSEDGEKRDHKV---------------KSRGEDTGASMKHPKHH 300

Query: 303 KRSEDAVAAAKERFLARK 316
           K    + ++++ER L  K
Sbjct: 307 KNRAHSRSSSEERGLGTK 300

[Close]
BLAST of CmoCh13G003680 vs. Swiss-Prot
Match: NSRP1_RAT (Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.7e-20
Identity = 99/318 (31.13%), Postives = 160/318 (50.31%), Query Frame = 1 

Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K     QP    L  P  F +D DDD   V   + R+A+K +A++  + + +
Sbjct: 7   QYGLILPKKT----QPLNRVLQKPSVFGNDSDDDEASVSESLQREAAKKQAMRQTKLEIQ 66

Query: 63  KALAEDPSVFDYDGVYDEMKEKAVL--PRAYDREERKPKYIQNLMKKAKEREREQEVIYE 122
           KALAED +V++YD +YDEM++K     P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDF 182
           +K+ +ER  +   +  K+ FVTSAYKKKL E+A+  E E+     E + DVTK+ D+S F
Sbjct: 127 KKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGF 186

Query: 183 YFNLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSP 242
           Y +L   +    G    P+   ++ ++  + E  KL+ + +  N        S   P   
Sbjct: 187 YRHL---LNQAVGEEAVPKSSFREARTVIKEE--KLRGYPDETN--------SENRPQQN 246

Query: 243 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHH 302
                 +E+     +  S+S ++     RG           V+ + E D G       HH
Sbjct: 247 CALQSGVEEAEENPDADSDSEESCDDGERGDH--------KVKSRGEEDTGASTKYLKHH 299

Query: 303 KRSEDAVAAAKERFLARK 316
           K    + ++++E  L+ K
Sbjct: 307 KNHTHSRSSSEEGGLSTK 299

[Close]
BLAST of CmoCh13G003680 vs. Swiss-Prot
Match: NSRP1_BOVIN (Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19
Identity = 107/321 (33.33%), Postives = 164/321 (51.09%), Query Frame = 1 

Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K +QQ  P     P+  G   DDDDD   V   + R+A+K +A+K  + + +
Sbjct: 7   QYGLILP-KKAQQLHPVLQK-PSVFGNDSDDDDDETSVSESLQREAAKKQAMKQTKLEIQ 66

Query: 63  KALAEDPSVFDYDGVYDEMKEKAVL--PRAYDREERKPKYIQNLMKKAKEREREQEVIYE 122
           KALAED +V++YD +YDEM++K     P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDF 182
           +K+ +ER  +   +  K+ FVTSAYKKKL E+A+  E ER     E + DVTK+ D+S F
Sbjct: 127 KKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDLSGF 186

Query: 183 YFNLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDH-------QS 242
           Y +L   +    G    P    ++ +SE + E  K    E S+ + I  ++       + 
Sbjct: 187 YRHL---LNQAVGEEEVPTCSFREARSEIKEEKSKGYSDEVSSESRIPPENCIRQTGVKV 246

Query: 243 PKYPSSPSQ-SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPV---EKQPEHD 302
            + P + S   AK+ E D  +E    N  +   ++    S    H+R P        E +
Sbjct: 247 EENPDADSDFDAKSSEND-EMEGDKGNCRREKGTET--LSSHSKHHRNPARSPSSSEERE 306

[Close]
BLAST of CmoCh13G003680 vs. Swiss-Prot
Match: NSRP1_HUMAN (Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-19
Identity = 104/323 (32.20%), Postives = 157/323 (48.61%), Query Frame = 1 

Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREIS----RQASKNKALKDIEEQH 62
           +YGL L  K  Q      P L  P  F +D DDD E  +S    R+A+K +A+K  + + 
Sbjct: 7   QYGLILPKKTQQ----LHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEI 66

Query: 63  KKALAEDPSVFDYDGVYDEMKEKAVL--PRAYDREERKPKYIQNLMKKAKEREREQEVIY 122
           +KALAED +V++YD +YDEM++K     P+    ++RKPKYI NL+K  + R++EQE   
Sbjct: 67  QKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRM 126

Query: 123 ERKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISD 182
           E+K+ +ER  +   +  K+ FVTSAYKKKL E+A+  E E+     E   DVTK+ D+S 
Sbjct: 127 EKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSG 186

Query: 183 FYFNLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVN---------- 242
           FY +L          AV   E P+    E ++ +++ K    S      N          
Sbjct: 187 FYRHL-------LNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQ 246

Query: 243 -DHQSPKYPSSPSQSAKTIEQDRHLEEHLSNSNK----TTPSDVRGTSPPPLHNRTPVEK 302
            D +  + P + S        D  +EE   N  +     TP +         H+R+P E+
Sbjct: 247 TDVKVEENPDADSDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEE 306

[Close]
BLAST of CmoCh13G003680 vs. Swiss-Prot
Match: NSRP1_DANRE (Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-15
Identity = 94/325 (28.92%), Postives = 159/325 (48.92%), Query Frame = 1 

Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD--VEREISRQASKNKALKDIEEQHKK 62
           +YGL L     Q++     PL  P  F DD DD+  V   + ++A K K +K    + +K
Sbjct: 7   QYGLIL----PQKRASKSAPLARPSVFGDDSDDETSVGESLQKEAIKKKMMKQTRLEMQK 66

Query: 63  ALAEDPSVFDYDGVYDEMKEKAVLP--RAYDREERKPKYIQNLMKKAKEREREQEVIYER 122
           AL ED +V++YD VYD+++++ +    +    E++KPKYI  L++  +ER++EQE   ER
Sbjct: 67  ALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDER 126

Query: 123 KLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFY 182
           K+ KER  +   +A K+ FVTSAY++KL E+ + +E E+     E   DV K+ D+S FY
Sbjct: 127 KIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALDVKKQKDLSGFY 186

Query: 183 FNLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPS 242
            +             E   P +  QSE++A          SA A+     +SP  P S +
Sbjct: 187 RHFLNQ------TVGEEVVPDRSAQSEEKA--------TSSAAAE-----RSPS-PESTA 246

Query: 243 QSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPK----R 302
              ++  +    ++ +      + +     +      ++P+    + D+ E++ K    +
Sbjct: 247 NRRESEAESHSDDDQVDVKPAFSKTTANNHAKRQYRQKSPLSDSDDGDERERERKEIKEK 304

Query: 303 DHHKRSEDAVAAAKERFLARKRTKE 320
            H  R  D    AKE+   R R K+
Sbjct: 307 SHKDRDRD---RAKEKERERMRDKD 304

[Close]
BLAST of CmoCh13G003680 vs. TrEMBL
Match: A0A0A0LJE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 6.6e-135
Identity = 265/323 (82.04%), Postives = 286/323 (88.54%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120
           AL EDPSVFDYDGVYDEMKEK V PRAYDREERKPKYIQNLMKKA+EREREQE+IYERKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180
           AKERSKDDHLYAGKDKFVT AYKKKLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF+
Sbjct: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 LQKNIAYGAGNAVEPREPPQKLQ---SEKQAEVQKLKKHEESANADIVNDHQSPKYPSSP 240
           LQKN+AYGA NA+EP  PP+KLQ    EKQ EV  L+KHEES N D  NDH   +  + P
Sbjct: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLL-QNSNLP 240

Query: 241 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHH 300
           S S KTIE+  HLEE L  SNKTTPS++ GTSPP LH++TPV++QP+H+Q EQ PK DHH
Sbjct: 241 SCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHH 300

Query: 301 KRSEDAVAAAKERFLARKRTKEV 321
           KR+EDAVAAAKERFLARKR KEV
Sbjct: 301 KRNEDAVAAAKERFLARKRAKEV 322

[Close]
BLAST of CmoCh13G003680 vs. TrEMBL
Match: A0A061GV10_THECC (Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao GN=TCM_041289 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 4.0e-92
Identity = 212/321 (66.04%), Postives = 237/321 (73.83%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP PLGF+DDDDDDVEREISRQASKNK+LK+IEEQH+
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPLGFRDDDDDDVEREISRQASKNKSLKEIEEQHR 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPSVFDYDGVYDEMKEK V PR  DREER+ KYI NL+KKA++R+ EQE++YERK
Sbjct: 61  KALEEDPSVFDYDGVYDEMKEKVVRPRVQDREERQSKYIHNLIKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N V PR P      EK  E +K +K +E    D++   Q     ++P  
Sbjct: 181 NLGKNVAFGA-NEVGPRMP------EKHTESRKPEKKDEK-EIDVIKRVQPLPNSNAPES 240

Query: 241 SAKTIE-QDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHHK 300
           S  T   QD         S  + P  V    P      T   KQP  D    QPKRDHHK
Sbjct: 241 SGVTDRTQDETSSRENFESQDSRPITV-DVLPETALQETSSVKQPSVD----QPKRDHHK 300

Query: 301 RSEDAVAAAKERFLARKRTKE 320
           R EDAVAAA+ERFLARKR KE
Sbjct: 301 RGEDAVAAARERFLARKRAKE 308

[Close]
BLAST of CmoCh13G003680 vs. TrEMBL
Match: A0A0D2PQG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.7e-90
Identity = 205/320 (64.06%), Postives = 236/320 (73.75%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPSVFDYDGVYD MKE+ V PRA D EERKPKYI NLMKKA++R+ EQE++YERK
Sbjct: 61  KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERKPKYILNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N  +PR+P          E+++ +K +E    + VN       P S + 
Sbjct: 181 NLGKNVAFGA-NEAKPRKP----------ELREPEKEKEKEVLNRVNPLPDSVSPESSAV 240

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHHKR 300
             +T ++    E   S  +K    D   T P      T  EKQP  D    QPK DHHKR
Sbjct: 241 IDRTRDESSFREIFDSRDSKPITED---TVPDTAVQETTSEKQPSVD----QPKSDHHKR 300

Query: 301 SEDAVAAAKERFLARKRTKE 320
             DAVAAA+ERFLARKR KE
Sbjct: 301 GADAVAAARERFLARKRAKE 302

[Close]
BLAST of CmoCh13G003680 vs. TrEMBL
Match: A0A0B0NEG8_GOSAR (Nuclear speckle splicing regulatory 1 OS=Gossypium arboreum GN=F383_10067 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 8.4e-90
Identity = 204/320 (63.75%), Postives = 234/320 (73.12%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPATRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDP VFDYDGVYD MKE+ V PRA DREERKPKYI NLMKKA++R+ EQE++YERK
Sbjct: 61  KALEEDPCVFDYDGVYDAMKEEVVRPRAQDREERKPKYIHNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N  +PREP          E+++ +K +E    + VN       P S + 
Sbjct: 181 NLGKNVAFGA-NEAKPREP----------ELREPEKEKEKEVLNRVNLLPDSIAPESSAV 240

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHHKR 300
             +T ++    E   S  +K    D     P      T  EKQP       QPK DHHKR
Sbjct: 241 IDRTRDESSSQEIFDSRDSKPITEDA---VPDTAVQETTSEKQPP-----DQPKSDHHKR 300

Query: 301 SEDAVAAAKERFLARKRTKE 320
             DAVAAA+ERFLARKR KE
Sbjct: 301 GADAVAAARERFLARKRAKE 301

[Close]
BLAST of CmoCh13G003680 vs. TrEMBL
Match: A0A0D2QPK2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 4.2e-89
Identity = 205/321 (63.86%), Postives = 236/321 (73.52%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERK-PKYIQNLMKKAKEREREQEVIYER 120
           KAL EDPSVFDYDGVYD MKE+ V PRA D EERK PKYI NLMKKA++R+ EQE++YER
Sbjct: 61  KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERKQPKYILNLMKKAEQRKWEQEIVYER 120

Query: 121 KLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFY 180
           KL KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFY
Sbjct: 121 KLVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFY 180

Query: 181 FNLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPS 240
           FNL KN+A+GA N  +PR+P          E+++ +K +E    + VN       P S +
Sbjct: 181 FNLGKNVAFGA-NEAKPRKP----------ELREPEKEKEKEVLNRVNPLPDSVSPESSA 240

Query: 241 QSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHHK 300
              +T ++    E   S  +K    D   T P      T  EKQP  D    QPK DHHK
Sbjct: 241 VIDRTRDESSFREIFDSRDSKPITED---TVPDTAVQETTSEKQPSVD----QPKSDHHK 300

Query: 301 RSEDAVAAAKERFLARKRTKE 320
           R  DAVAAA+ERFLARKR KE
Sbjct: 301 RGADAVAAARERFLARKRAKE 303

[Close]
BLAST of CmoCh13G003680 vs. TAIR10
Match: AT2G27285.1 (AT2G27285.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-71
Identity = 169/335 (50.45%), Postives = 226/335 (67.46%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQPT-RPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQ+R  PSQ+KQ + RPPL     F +++D DVE+EISRQA+K KA K+IEEQHK
Sbjct: 1   MKKYGLQIRA-PSQKKQSSSRPPLRPASIFDEEEDHDVEKEISRQATKTKAHKEIEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPS F YD VYD+MK+KAVLPR  DREERKP+YIQNLMK+A+ RE+E E++YERK
Sbjct: 61  KALEEDPSAFSYDEVYDDMKQKAVLPRMQDREERKPRYIQNLMKQAERREKEHEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           LAKER KD+HL++ K+KFVT AYK+KL EQ KW+ EERLR+LREE+DDVTKK D+SDFYF
Sbjct: 121 LAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKDLSDFYF 180

Query: 181 NLQKNIAYGA-------GNAVEPREPPQKLQSEKQA--------EVQKLKKHEESANADI 240
           N+ KN+A+GA          +E +   +KL+ +++A        EV +++K  +S   ++
Sbjct: 181 NIGKNVAFGAREVEAKEAEKLEEQRKAEKLEEQRKAEKLEELRKEVTRVEKKRKSPEKEV 240

Query: 241 VNDHQSPKYPSSPSQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPE 300
             D  S ++ SS S+S + +E ++ + E    S+ T                    K   
Sbjct: 241 SPD--SGEFGSSRSKSLEPLEAEQAVSEKEMGSDGTEE-----------------RKSSI 300

Query: 301 HDQGEQQPKR-DHHKRSEDAVAAAKERFLARKRTK 319
            +  ++ PK  +  KR EDA+AAAKERFLARK+ K
Sbjct: 301 KEAAKEVPKAINDQKRREDAIAAAKERFLARKKAK 315

[Close]
BLAST of CmoCh13G003680 vs. TAIR10
Match: AT2G27280.1 (AT2G27280.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 232.6 bits (592), Expect = 3.3e-61
Identity = 139/278 (50.00%), Postives = 195/278 (70.14%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQPTRPPL--PAPLGFQDDDDDDVEREISRQASKNKALKDIEEQH 60
           + KYGLQ+R  PSQ+KQ +  PL   A +  +DD+++DVE+EISRQASK K+LK IE+QH
Sbjct: 142 IKKYGLQIRA-PSQKKQSSSRPLLRTASIFGEDDEENDVEKEISRQASKTKSLKKIEKQH 201

Query: 61  KKALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYER 120
           KKA+ EDPS F YD VYD++K +A LPR  DREE K +YIQ++MK+A+ RE+E E++YER
Sbjct: 202 KKAIEEDPSAFAYDEVYDDIKHEAALPRMQDREEHKSRYIQHIMKQAERREKEHEIVYER 261

Query: 121 KLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFY 180
           KLAKER+KD+HLY+ K+KFVT  +K+KL EQ KW+EEERLR+LREE+DDVTKK+D+S+FY
Sbjct: 262 KLAKERAKDEHLYSDKEKFVTGPFKRKLEEQKKWLEEERLRELREERDDVTKKNDLSEFY 321

Query: 181 FNLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPS 240
            N+ KN+A+GA + +E RE  +  +  K   +++L+K E           +SP+   SP 
Sbjct: 322 INIGKNVAFGARD-IEAREAGRLKELRKVDRLEELRKEETRKE----KKRKSPEKEVSPD 381

Query: 241 ------QSAKTIE-QDRHLEEHLSNSNKTTPSDVRGTS 270
                  S K+++ QD  ++E    + K T  D   T+
Sbjct: 382 SGDFGLSSKKSVKPQDASIKEEAKETQKATREDAIATA 413

[Close]
BLAST of CmoCh13G003680 vs. TAIR10
Match: AT1G55928.1 (AT1G55928.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-49
Identity = 121/266 (45.49%), Postives = 179/266 (67.29%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           M+K+GLQLR   S++  P      AP+  +D++D+DV++EISRQASK K+LK  EEQHKK
Sbjct: 12  MNKFGLQLRKTLSKKVLPI-----APILGEDEEDNDVDKEISRQASKTKSLKKFEEQHKK 71

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREE-RKPKYIQNLMKKAKEREREQEVIYERK 120
           AL EDP  F YD VYD+ K++A LPR ++R+E  KP Y Q + +KA  R++E+E++YERK
Sbjct: 72  ALEEDPCAFAYDEVYDDTKQEAPLPRLHERQECNKPIYNQLMKEKADRRQKEREIVYERK 131

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           LAKER+K+ HL+  + K VT +YK+KL E+ +W+ EERLR+L EEKDDVTKK D+SDFYF
Sbjct: 132 LAKERAKEQHLFPDQVKVVTGSYKRKLEERDQWLSEERLRELGEEKDDVTKKKDLSDFYF 191

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQ 240
           N+ KN+A+GA + ++ RE  +  +  K  ++++L++  ++ + + V    S    SS   
Sbjct: 192 NIGKNVAFGARD-IKARETERLKEQRKVPKLEELREKMKTESPERVVLPDSRDIGSSCRI 251

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDV 266
             +  E +    E   NS+ T   D+
Sbjct: 252 IVELQEAEHVASEEKMNSDATEERDL 271

[Close]
BLAST of CmoCh13G003680 vs. NCBI nr
Match: gi|449470301|ref|XP_004152856.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus])

HSP 1 Score: 488.4 bits (1256), Expect = 9.4e-135
Identity = 265/323 (82.04%), Postives = 286/323 (88.54%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120
           AL EDPSVFDYDGVYDEMKEK V PRAYDREERKPKYIQNLMKKA+EREREQE+IYERKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180
           AKERSKDDHLYAGKDKFVT AYKKKLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF+
Sbjct: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 LQKNIAYGAGNAVEPREPPQKLQ---SEKQAEVQKLKKHEESANADIVNDHQSPKYPSSP 240
           LQKN+AYGA NA+EP  PP+KLQ    EKQ EV  L+KHEES N D  NDH   +  + P
Sbjct: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLL-QNSNLP 240

Query: 241 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHH 300
           S S KTIE+  HLEE L  SNKTTPS++ GTSPP LH++TPV++QP+H+Q EQ PK DHH
Sbjct: 241 SCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHH 300

Query: 301 KRSEDAVAAAKERFLARKRTKEV 321
           KR+EDAVAAAKERFLARKR KEV
Sbjct: 301 KRNEDAVAAAKERFLARKRAKEV 322

[Close]
BLAST of CmoCh13G003680 vs. NCBI nr
Match: gi|659069555|ref|XP_008450616.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo])

HSP 1 Score: 484.2 bits (1245), Expect = 1.8e-133
Identity = 263/323 (81.42%), Postives = 285/323 (88.24%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQP RPPLPAPLGFQDDDDD+VEREISRQASKNKALKDIEEQHKK
Sbjct: 13  MSKYGLQLRVKPSQQKQPKRPPLPAPLGFQDDDDDNVEREISRQASKNKALKDIEEQHKK 72

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120
           AL EDPSVFDYDGVYDEMKEKAV PRAYDREERKPKYIQNLMKKA+EREREQE+IYERKL
Sbjct: 73  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 132

Query: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180
           AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF+
Sbjct: 133 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 192

Query: 181 LQKNIAYGAGNAVEPREPPQKLQ---SEKQAEVQKLKKHEESANADIVNDHQSPKYPSSP 240
           LQKN+AYGA NA+EPR  P+KLQ    EKQ EV  L+KHEES N D  NDHQ        
Sbjct: 193 LQKNVAYGARNAIEPRATPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHQ-------- 252

Query: 241 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHH 300
            Q++KTIE+  HLEE LS SNKTTPSD+ GTSPP LH++  V+++P+H+  EQ PKRDHH
Sbjct: 253 LQNSKTIEEHSHLEERLSASNKTTPSDIEGTSPPTLHDKALVQERPKHELSEQPPKRDHH 312

Query: 301 KRSEDAVAAAKERFLARKRTKEV 321
           KR+EDAVAAAKERFLARKR KEV
Sbjct: 313 KRNEDAVAAAKERFLARKRAKEV 327

[Close]
BLAST of CmoCh13G003680 vs. NCBI nr
Match: gi|590586457|ref|XP_007015711.1| (Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 346.3 bits (887), Expect = 5.8e-92
Identity = 212/321 (66.04%), Postives = 237/321 (73.83%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP PLGF+DDDDDDVEREISRQASKNK+LK+IEEQH+
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPLGFRDDDDDDVEREISRQASKNKSLKEIEEQHR 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPSVFDYDGVYDEMKEK V PR  DREER+ KYI NL+KKA++R+ EQE++YERK
Sbjct: 61  KALEEDPSVFDYDGVYDEMKEKVVRPRVQDREERQSKYIHNLIKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N V PR P      EK  E +K +K +E    D++   Q     ++P  
Sbjct: 181 NLGKNVAFGA-NEVGPRMP------EKHTESRKPEKKDEK-EIDVIKRVQPLPNSNAPES 240

Query: 241 SAKTIE-QDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHHK 300
           S  T   QD         S  + P  V    P      T   KQP  D    QPKRDHHK
Sbjct: 241 SGVTDRTQDETSSRENFESQDSRPITV-DVLPETALQETSSVKQPSVD----QPKRDHHK 300

Query: 301 RSEDAVAAAKERFLARKRTKE 320
           R EDAVAAA+ERFLARKR KE
Sbjct: 301 RGEDAVAAARERFLARKRAKE 308

[Close]
BLAST of CmoCh13G003680 vs. NCBI nr
Match: gi|823123751|ref|XP_012477249.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Gossypium raimondii])

HSP 1 Score: 340.9 bits (873), Expect = 2.4e-90
Identity = 205/320 (64.06%), Postives = 236/320 (73.75%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPSVFDYDGVYD MKE+ V PRA D EERKPKYI NLMKKA++R+ EQE++YERK
Sbjct: 61  KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERKPKYILNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N  +PR+P          E+++ +K +E    + VN       P S + 
Sbjct: 181 NLGKNVAFGA-NEAKPRKP----------ELREPEKEKEKEVLNRVNPLPDSVSPESSAV 240

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHHKR 300
             +T ++    E   S  +K    D   T P      T  EKQP  D    QPK DHHKR
Sbjct: 241 IDRTRDESSFREIFDSRDSKPITED---TVPDTAVQETTSEKQPSVD----QPKSDHHKR 300

Query: 301 SEDAVAAAKERFLARKRTKE 320
             DAVAAA+ERFLARKR KE
Sbjct: 301 GADAVAAARERFLARKRAKE 302

[Close]
BLAST of CmoCh13G003680 vs. NCBI nr
Match: gi|728829958|gb|KHG09401.1| (Nuclear speckle splicing regulatory 1 [Gossypium arboreum])

HSP 1 Score: 338.6 bits (867), Expect = 1.2e-89
Identity = 204/320 (63.75%), Postives = 234/320 (73.12%), Query Frame = 1 

Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPATRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDP VFDYDGVYD MKE+ V PRA DREERKPKYI NLMKKA++R+ EQE++YERK
Sbjct: 61  KALEEDPCVFDYDGVYDAMKEEVVRPRAQDREERKPKYIHNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N  +PREP          E+++ +K +E    + VN       P S + 
Sbjct: 181 NLGKNVAFGA-NEAKPREP----------ELREPEKEKEKEVLNRVNLLPDSIAPESSAV 240

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNRTPVEKQPEHDQGEQQPKRDHHKR 300
             +T ++    E   S  +K    D     P      T  EKQP       QPK DHHKR
Sbjct: 241 IDRTRDESSSQEIFDSRDSKPITEDA---VPDTAVQETTSEKQPP-----DQPKSDHHKR 300

Query: 301 SEDAVAAAKERFLARKRTKE 320
             DAVAAA+ERFLARKR KE
Sbjct: 301 GADAVAAARERFLARKRAKE 301

The following BLAST results are available for this feature:
BLAST of CmoCh13G003680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NSRP1_MOUSE8.2e-2231.45Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1[more]
NSRP1_RAT7.7e-2031.13Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=1... [more]
NSRP1_BOVIN1.3e-1933.33Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1[more]
NSRP1_HUMAN3.8e-1932.20Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1[more]
NSRP1_DANRE2.6e-1528.92Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2[more]
BLAST of CmoCh13G003680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJE9_CUCSA6.6e-13582.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1[more]
A0A061GV10_THECC4.0e-9266.04Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao ... [more]
A0A0D2PQG7_GOSRA1.7e-9064.06Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1[more]
A0A0B0NEG8_GOSAR8.4e-9063.75Nuclear speckle splicing regulatory 1 OS=Gossypium arboreum GN=F383_10067 PE=4 S... [more]
A0A0D2QPK2_GOSRA4.2e-8963.86Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1[more]
BLAST of CmoCh13G003680 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27285.11.6e-7150.45 Coiled-coil domain-containing protein 55 (DUF2040)[more]
AT2G27280.13.3e-6150.00 Coiled-coil domain-containing protein 55 (DUF2040)[more]
AT1G55928.11.3e-4945.49 Coiled-coil domain-containing protein 55 (DUF2040)[more]
BLAST of CmoCh13G003680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449470301|ref|XP_004152856.1|9.4e-13582.04PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus][more]
gi|659069555|ref|XP_008450616.1|1.8e-13381.42PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo][more]
gi|590586457|ref|XP_007015711.1|5.8e-9266.04Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao][more]
gi|823123751|ref|XP_012477249.1|2.4e-9064.06PREDICTED: nuclear speckle splicing regulatory protein 1-like [Gossypium raimond... [more]
gi|728829958|gb|KHG09401.1|1.2e-8963.75Nuclear speckle splicing regulatory 1 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018612DUF2040
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003680.1CmoCh13G003680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018612Domain of unknown function DUF2040PFAMPF09745DUF2040coord: 55..171
score: 2.3
NoneNo IPR availableunknownCoilCoilcoord: 144..171
scor
NoneNo IPR availablePANTHERPTHR30060INNER MEMBRANE PROTEINcoord: 1..320
score: 1.8E
NoneNo IPR availablePANTHERPTHR30060:SF0COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..320
score: 1.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G003680CmaCh13G003450Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003680CmaCh18G006390Cucurbita maxima (Rimu)cmacmoB395
CmoCh13G003680Lsi02G011940Bottle gourd (USVL1VR-Ls)cmolsiB194
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003680Melon (DHL92) v3.6.1cmomedB209
CmoCh13G003680Cucumber (Chinese Long) v3cmocucB0239
CmoCh13G003680Watermelon (97103) v2cmowmbB192
CmoCh13G003680Cucumber (Gy14) v1cgycmoB0880
CmoCh13G003680Wild cucumber (PI 183967)cmocpiB208
CmoCh13G003680Cucumber (Chinese Long) v2cmocuB206
CmoCh13G003680Melon (DHL92) v3.5.1cmomeB182
CmoCh13G003680Watermelon (Charleston Gray)cmowcgB171
CmoCh13G003680Watermelon (97103) v1cmowmB189
CmoCh13G003680Cucurbita pepo (Zucchini)cmocpeB180
CmoCh13G003680Cucumber (Gy14) v2cgybcmoB072