CmaCh13G003450 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G003450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nuclear speckle splicing regulatory 1
Location	Cma_Chr13 : 3995435 .. 4000493 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTTTCACGGCGGCTCCCCCTCCTTCGGGTCAGGCACTGCGGTTCTGCACCCTTTTTCATATCTGGATCTCAGGTATTCTTCTTAATTCCCATCTGTCTTTCAATCTTTCTTGTTTTGCTATATTTTGAATTCAATCGTCTGGTTTCATTGCAACCGATTTTGCTCCTCAATGGCTTTATCCGATTTCTCACTCGAATATACGCTTCAATTGACTTCGGACCTGTTTGGAATTGCCAAAATCACTTTTGCAATTGCGCAGAGGATGAAATTGATTTTTGAAGTGTTAGTTGGTAGATGATTTTTGCTAGGGTGACTAACCTGAAATCAGCTCCAGAACTTATCTGGATTCTAATTCAGCTTGCCCCTAATTTAAGAACACGATTCTCAGCCCTGAATAATTTCTTTGCTTTCGATTTGTTCCGCTTTCTCTCACCATTGTAGCATCTTCAGAGGACTCTTTCATTTCCGGCCGCTTTTTCTCTCGTTCTGCTGATCATTTCGTTGGTTTTCGCTGGTAGTTGTTAGCTTCATCCTTGTTTGAGTTTTGGACGTGTGGTTTCCACATTGATTGTGAACTGTTTGCATTATTCTTAATTTTGAATTAGGTTTTCAATTTGTTTATGTAATTTTGACTGGTGGTTTTGATTTGTGTTTCGTTTTGAACTAGGTTTTTGATTTGTTCCGTAATTGCTTCATTGATTAGGTTGCCAATGGTGTGTTGTTTGCTTTTCTTACTTATGATTGGGTGGTGTATTTCTGGAATTCGACGGCAGTAAGTTTTGTTTCTTTGGTGTGATGGTGTGTTTTTGTCTGTGCTCTTCATGTGGTATTGCATTGTTGGAGTTTGCCTTCATTTGTGAAGCTTTTCTGTTTTCGATTTTGATCGTACTGATGGGGCTTTTTTTTGTTAATTGTGTATATGAAAATCCTTGCTGGAGCATTGTTAGTTGGAAGCTTTTGGCTACCATTATATTTCTAGGGAGCTTTTCTTTGGTTGTCATTGTTTTGATTGTGATAAGATCAGTAATCTTCTACCATTTTGTTTCCTTCTCATCCTACTCTGATCAATAATCTTACTTCTCTTTCTACTTTTGCTTCTGTTTTTTGTGAATTGTTCATTTAGCTATATATATATATACTATCATAATTCTGGTGTGAATAGTTAATTTAAGTTGTTTAGCAAATATTATATGTAAATCACTTCAAACCAAACATTCAAATGGCTATATGAAAATTACTTTACAAAACCAATTGTAATTAGATCTCTTTTTATAAAATCACTTGTACTACAATGAGTCTCAAACATGCCCTTCATGATTAAACCCACTTGAGTTTGAGCATGCTTGTTCTATCCCGTTTGGTTTTGTGTTCAACTCGATTCGGATTTTACACTTCCTTCAGTTCTCATTTCTTTCCATCTTATTGGTTGTTTTCCGTTTCACATGTTCTTTTTGCGTGCAATCCTTTTCTGTTCTTAATCTCTTCGATTTGATTATTCCTTTTCTTATCTTTTTGCACTTGTCCCATTGCCCTGGATTTCAATTTCATTTTCTCTGTTCTCTTCAATTTCAATTTTGCAAGTCCAGTCATCATCTCCACCAAGTTTTTTCTAATTCCACCTGTGTTCTTCTAGTCCCTGAACCCATATCAAACTTATCTGGCTAACTTGATTGGAACAAAGGATTGAAATAGAAATTGTACTGAAAACTTGATTAAGAAAAGAAAAAAGAATAAAGGGAAAATATTCCAAAGCAACTTAGAGGGACCTCAACCTGAGCAAGTTGAAGCTAAGAGAGAAAAATACACTTTTGGTATCTCAGGTTTGAGTTTGGTGCTAAGTTCGGTGCATTTAGATACCTGAGTTTTCAAACTCAACAATTTAGTCCATGAGTTTTGGATTTAGTTGCATTTTAGTTCTTCCGTCCAAATTTTAATTTTCTTTTTTCTTCTCTCCCTTCTCTTCTCTTTTCTTTCTCCCTCCTTCTCACATCATCCTCCTTCTTCCATTGCCGATAGCTTCTGATTGGTGGTGACAAACATAGCTTGTCAGTGTCCATCAGCACATACAACCCTGTCTAAACCCAACACAAACTGCCGTGCTATTCTGTAGTCAGTGTCCACCAACTCTGAGGTGAAATGGTTCAACTTGGAAAACTCTCCGGCGTATGTGGTAACAAAACGCCCCCTTTGACACAATTAGGTGAACTCTTGCTGCTTGCGAAGTTGAACGTCCTCTTGGTAGTACTCTTCATTAAAAGCACCCTTGAATTTCGCCCACAAGATTGCACCTCCCTCGGGACTAATAATCTCGCGGGTGGATTGCCACCATAGTTCTGCATCATCTTGCAGCATTCACTCCACCTTCTAATCTTCAGGATAGTTAGTCAACACAAACATAGTCTCTATATATCTAAGCCACATTTGTGCCACAGTCGGATCATTAGAAGTTCCCTTAAAGGTTCGAGGGTCACCCCTCTTAAAATCATGCAAGCTCCTTACTTCCTTGGTCGATGATGTGTCATTTGCTTGTTGATTAGCAGTCAGGTTTTGTATAACAGTTTGCAATACGTCCACCAGAGCAGCTGTACTATCATAACACATTACTATCATAATGCAACGCGTCCACCACAATTTGCACAATTCATTACATGTCACTGGACGCCACAAAAAAGCAAAGGCCCACATGATTTCATTACAGACATAAATATCAAACGTGCGTCTATACTATCATAATATAAAGGGGAAATATCTCGATGCACATGATATACAAACATGCATGAGATCCCATGATTTACATTTCACGACATAATACTTAATACCTTTCATTAGTCTTAGCATTTCATATTATAACTCATTTATGGAACATGTATGCATGACAACATTTTTCAATTCATTTCATGAAAATAGGTTAATGGATTACAGGCATACGTAGCAAATCTCTTATCAATACAAGAATACATAAATATTGCCTAACATAGACATTTCTATGGTACATCAAAAGTCATAGAGCATGCACCATCATACAATACACTAAGCTAACACCTACAGTGAGGTCTGGTTGACCTTGACCCAAGTTAAGTGCTACAATTTATTTATTCGCCTTTTTTTTTCTTTCCATTTTTCTTGTAAACCAAGTCATGAAGGCTATTTTACCGTTTGTTCATTGTTGGCCAATATTCTGAAAATTTATTTTCCTCATAGCTGCTTTACATTTTCTGCCCATATTTAGCAGCTGACGAGGATTCTAGCCAATGTTTAAGATTTAGGCCATTGTGTTCATACAATCATTCAGGACCTTGAAAAGTATTTTTATTTTGTTTTATCTTTCCTGGTAGAGAATTGGTGTTTTATGCATATGGAAGAATTTTGTATGTTTTATGCATCAATGAGGTACATTCAAATCTTCACAGGAACAGTTAGAAGACATTAAAAATGAGCAAGTACGGCCTACAACTTAGAGTTAAGCCATCACAGCAGAAACAGCCTACAAGACCGCCCCTTCCTGCTCCTCTTGGATTTCAAGACGACGACGACGATGATGTTGAGAGAGAGATATCCCGACAAGCTTCCAAGAATAAGGCACTTAAGGATGTAAGCTAGCTTGTATATGACTGTGTCATTAACAACAATATCGTGGTTGTATGCTACCCTTAATTTTATTTTTCTCCCTTGAAATATCAATTTAGATCGAGGAGCAACACAAGAAAGCACTAGCGGAAGATCCGTCGGTTTTCGATTACGATGGAGTCTATGATGAAATGAAAGAAAAGGCTGTTCTACCTCGAGCATATGATCGTGAAGAGCGAAAGGTATGTTTATAATTTGATCCCAAACTTGTGTAAAAATACAGTATCACCCTAATGTAATGCTCTGCCAGTGTGGTGAAATTACTTATTTGCTCACTGCATTTTTTATTGCAGCCAAAGTATATTCAAAATTTGATGAAGAAGGCAAAAGAGCGAGAGAGAGAACAGGAGGTTATATATGAAAGAAAACTAGCCAAGGAGAGAAGCAAAGATGATCATCTTTATGCTGGTAAGGACAAATTCGTCACTAGTGCCTACAAAAAGAAACTTGCAGAACAAGCTAAGTGGATGGAGGAAGAACGTCTCCGACAACTTCGAGAGGAGAAAGATGATGTATGTTTAACTTTGCACTCTGTTTCTTTTTCTTTTCGTTTTATAGTTTTATAAGTTATTATACTTTGCTAAATGCCCTCTGTGACAAAATGAGCGAGTATAAGTTATTTGTGACTGAATGAGTAACATTGAACCTAACAAGGGTCCTAATATGCCACCACTAATAAGGGTCGTAATGTAATCATAAAATGATTTAGGATCCTTGTTAGGAACATTGAAACATTCTTTATAATGGTGTGGAAATCTCTCCCTAGCAGACGGGTTTTATAAACCTTGAGGGGAAACCCGAAAGGAAAAGTCTAAAGAGGACAATATCTATTAGCGGTGGGCTTGGGTCATTAGAGCAATCCATATCTTGTTCTTGGGTTACCTTAAAGAATTGCTTTACGCTTTCGTTAATGTGTGTTTTTCATTGACAGTCAATTGTCTGATTGTTCTTTTCCTTCTAATTTGAAGGTTACCAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCGGTAATGCAGTCGAGCCGAGGGAACCTCCACAGAAGCTTCAATCAGAGAAGCAGGCTGATGTCCAGAAAATGAAGAAGCATGGAGAGAGTGCTAATGCCGATATTGTTAATGATCATCAGTCACCGAAATACCCCAGCTCGCCTTCCCAGTCAGCAAAGACTATAGAACAGGATCGTCACCTCGAAGAGCACCTTTCGAATTCAAACAAAACAACACCGTCTGATGTACGAGGTACTAGCCCCCCTCCATTACACAATAAAACTCCAGTTGAGAAACAGCCCGAACATGACCAAGGTGAACAACAACCAAAGCGTGATCATCATAAAAGAAGTGAAGATGCTGTCGCTGCTGCAAAAGAGCGATTTTTGGCTCGAAAAAGAACAAAGGAGGTCTGA

mRNA sequence

CAGTTTCACGGCGGCTCCCCCTCCTTCGGGTCAGGCACTGCGGTTCTGCACCCTTTTTCATATCTGGATCTCAGGAACAGTTAGAAGACATTAAAAATGAGCAAGTACGGCCTACAACTTAGAGTTAAGCCATCACAGCAGAAACAGCCTACAAGACCGCCCCTTCCTGCTCCTCTTGGATTTCAAGACGACGACGACGATGATGTTGAGAGAGAGATATCCCGACAAGCTTCCAAGAATAAGGCACTTAAGGATATCGAGGAGCAACACAAGAAAGCACTAGCGGAAGATCCGTCGGTTTTCGATTACGATGGAGTCTATGATGAAATGAAAGAAAAGGCTGTTCTACCTCGAGCATATGATCGTGAAGAGCGAAAGCCAAAGTATATTCAAAATTTGATGAAGAAGGCAAAAGAGCGAGAGAGAGAACAGGAGGTTATATATGAAAGAAAACTAGCCAAGGAGAGAAGCAAAGATGATCATCTTTATGCTGGTAAGGACAAATTCGTCACTAGTGCCTACAAAAAGAAACTTGCAGAACAAGCTAAGTGGATGGAGGAAGAACGTCTCCGACAACTTCGAGAGGAGAAAGATGATGTTACCAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCGGTAATGCAGTCGAGCCGAGGGAACCTCCACAGAAGCTTCAATCAGAGAAGCAGGCTGATGTCCAGAAAATGAAGAAGCATGGAGAGAGTGCTAATGCCGATATTGTTAATGATCATCAGTCACCGAAATACCCCAGCTCGCCTTCCCAGTCAGCAAAGACTATAGAACAGGATCGTCACCTCGAAGAGCACCTTTCGAATTCAAACAAAACAACACCGTCTGATGTACGAGGTACTAGCCCCCCTCCATTACACAATAAAACTCCAGTTGAGAAACAGCCCGAACATGACCAAGGTGAACAACAACCAAAGCGTGATCATCATAAAAGAAGTGAAGATGCTGTCGCTGCTGCAAAAGAGCGATTTTTGGCTCGAAAAAGAACAAAGGAGGTCTGA

Coding sequence (CDS)

ATGAGCAAGTACGGCCTACAACTTAGAGTTAAGCCATCACAGCAGAAACAGCCTACAAGACCGCCCCTTCCTGCTCCTCTTGGATTTCAAGACGACGACGACGATGATGTTGAGAGAGAGATATCCCGACAAGCTTCCAAGAATAAGGCACTTAAGGATATCGAGGAGCAACACAAGAAAGCACTAGCGGAAGATCCGTCGGTTTTCGATTACGATGGAGTCTATGATGAAATGAAAGAAAAGGCTGTTCTACCTCGAGCATATGATCGTGAAGAGCGAAAGCCAAAGTATATTCAAAATTTGATGAAGAAGGCAAAAGAGCGAGAGAGAGAACAGGAGGTTATATATGAAAGAAAACTAGCCAAGGAGAGAAGCAAAGATGATCATCTTTATGCTGGTAAGGACAAATTCGTCACTAGTGCCTACAAAAAGAAACTTGCAGAACAAGCTAAGTGGATGGAGGAAGAACGTCTCCGACAACTTCGAGAGGAGAAAGATGATGTTACCAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCGGTAATGCAGTCGAGCCGAGGGAACCTCCACAGAAGCTTCAATCAGAGAAGCAGGCTGATGTCCAGAAAATGAAGAAGCATGGAGAGAGTGCTAATGCCGATATTGTTAATGATCATCAGTCACCGAAATACCCCAGCTCGCCTTCCCAGTCAGCAAAGACTATAGAACAGGATCGTCACCTCGAAGAGCACCTTTCGAATTCAAACAAAACAACACCGTCTGATGTACGAGGTACTAGCCCCCCTCCATTACACAATAAAACTCCAGTTGAGAAACAGCCCGAACATGACCAAGGTGAACAACAACCAAAGCGTGATCATCATAAAAGAAGTGAAGATGCTGTCGCTGCTGCAAAAGAGCGATTTTTGGCTCGAAAAAGAACAAAGGAGGTCTGA

Protein sequence

MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKKALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPSQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRSEDAVAAAKERFLARKRTKEV

Homology

[Close]

BLAST of CmaCh13G003450 vs. Swiss-Prot
Match: NSRP1_BOVIN (Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-23
Identity = 87/222 (39.19%), Postives = 129/222 (58.11%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K +QQ  P     P+  G   DDDDD   V   + R+A+K +A+K  + + +
Sbjct: 7   QYGLILP-KKAQQLHPVLQK-PSVFGNDSDDDDDETSVSESLQREAAKKQAMKQTKLEIQ 66

Query: 63  KALAEDPSVFDYDGVYDEMKEKAVL--PRAYDREERKPKYIQNLMKKAKEREREQEVIYE 122
           KALAED +V++YD +YDEM++K     P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDF 182
           +K+ +ER  +   +  K+ FVTSAYKKKL E+A+  E ER     E + DVTK+ D+S F
Sbjct: 127 KKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDLSGF 186

Query: 183 YFNLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGES 220
           Y +L          AV   E P     E ++++++ K  G S
Sbjct: 187 YRHL-------LNQAVGEEEVPTCSFREARSEIKEEKSKGYS 219

[Close]

BLAST of CmaCh13G003450 vs. Swiss-Prot
Match: NSRP1_MOUSE (Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.1e-21
Identity = 100/320 (31.25%), Postives = 156/320 (48.75%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K     QP    L  P  F  D DDD   V   + R+A+K +A+K  + + +
Sbjct: 7   QYGLILPKKT----QPLHRVLQKPSVFGSDSDDDETSVSESLQREAAKKQAMKQTKLEIQ 66

Query: 63  KALAEDPSVFDYDGVYDEMKEKAVL--PRAYDREERKPKYIQNLMKKAKEREREQEVIYE 122
           KALAED +V++YD VYDEM++K     P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDF 182
           +K+ +ER  ++  +  K+ FVTSAYKKKL E+A+  E E+     E   DVTK+ D+S F
Sbjct: 127 KKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGF 186

Query: 183 YFNLQKNIAYGAGNAVEPREPPQKLQSEKQADV--QKMKKHGESANADIVNDHQSPKYPS 242
           Y +L          AV     P+    E +  +  +K++ + +  N++     QS     
Sbjct: 187 YRHL-------LNQAVGEEAAPKSSFREARTVIKEEKLRGYPDETNSESRPPQQSCVLQR 246

Query: 243 SPSQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRD 302
              ++ +  + DR  ++  S   +     V               K    D G       
Sbjct: 247 GAQEAEENPDADREFDDESSEDGEKRDHKV---------------KSRGEDTGASMKHPK 300

Query: 303 HHKRSEDAVAAAKERFLARK 316
           HHK    + ++++ER L  K
Sbjct: 307 HHKNRAHSRSSSEERGLGTK 300

[Close]

BLAST of CmaCh13G003450 vs. Swiss-Prot
Match: NSRP1_RAT (Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.7e-20
Identity = 100/318 (31.45%), Postives = 159/318 (50.00%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K     QP    L  P  F +D DDD   V   + R+A+K +A++  + + +
Sbjct: 7   QYGLILPKKT----QPLNRVLQKPSVFGNDSDDDEASVSESLQREAAKKQAMRQTKLEIQ 66

Query: 63  KALAEDPSVFDYDGVYDEMKEKAVL--PRAYDREERKPKYIQNLMKKAKEREREQEVIYE 122
           KALAED +V++YD +YDEM++K     P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDF 182
           +K+ +ER  +   +  K+ FVTSAYKKKL E+A+  E E+     E + DVTK+ D+S F
Sbjct: 127 KKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGF 186

Query: 183 YFNLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSP 242
           Y +L          AV     P+    E +  +++ K  G     D  N    P+   + 
Sbjct: 187 YRHL-------LNQAVGEEAVPKSSFREARTVIKEEKLRG---YPDETNSENRPQQNCAL 246

Query: 243 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH 302
               +  E++   +   S+S ++     RG           V+ + E D G       HH
Sbjct: 247 QSGVEEAEENPDAD---SDSEESCDDGERGDH--------KVKSRGEEDTGASTKYLKHH 299

Query: 303 KRSEDAVAAAKERFLARK 316
           K    + ++++E  L+ K
Sbjct: 307 KNHTHSRSSSEEGGLSTK 299

[Close]

BLAST of CmaCh13G003450 vs. Swiss-Prot
Match: NSRP1_HUMAN (Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.7e-20
Identity = 104/323 (32.20%), Postives = 158/323 (48.92%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREIS----RQASKNKALKDIEEQH 62
           +YGL L  K  Q      P L  P  F +D DDD E  +S    R+A+K +A+K  + + 
Sbjct: 7   QYGLILPKKTQQ----LHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEI 66

Query: 63  KKALAEDPSVFDYDGVYDEMKEKAVL--PRAYDREERKPKYIQNLMKKAKEREREQEVIY 122
           +KALAED +V++YD +YDEM++K     P+    ++RKPKYI NL+K  + R++EQE   
Sbjct: 67  QKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRM 126

Query: 123 ERKLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISD 182
           E+K+ +ER  +   +  K+ FVTSAYKKKL E+A+  E E+     E   DVTK+ D+S 
Sbjct: 127 EKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSG 186

Query: 183 FYFNLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVN---------- 242
           FY +L          AV   E P+    E ++ +++ K  G S      N          
Sbjct: 187 FYRHL-------LNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQ 246

Query: 243 -DHQSPKYPSSPSQSAKTIEQDRHLEEHLSNSNK----TTPSDVRGTSPPPLHNKTPVEK 302
            D +  + P + S        D  +EE   N  +     TP +         H+++P E+
Sbjct: 247 TDVKVEENPDADSDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEE 306

[Close]

BLAST of CmaCh13G003450 vs. Swiss-Prot
Match: NSRP1_DANRE (Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 8.8e-16
Identity = 95/325 (29.23%), Postives = 159/325 (48.92%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD--VEREISRQASKNKALKDIEEQHKK 62
           +YGL L     Q++     PL  P  F DD DD+  V   + ++A K K +K    + +K
Sbjct: 7   QYGLIL----PQKRASKSAPLARPSVFGDDSDDETSVGESLQKEAIKKKMMKQTRLEMQK 66

Query: 63  ALAEDPSVFDYDGVYDEMKEKAVLP--RAYDREERKPKYIQNLMKKAKEREREQEVIYER 122
           AL ED +V++YD VYD+++++ +    +    E++KPKYI  L++  +ER++EQE   ER
Sbjct: 67  ALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDER 126

Query: 123 KLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFY 182
           K+ KER  +   +A K+ FVTSAY++KL E+ + +E E+     E   DV K+ D+S FY
Sbjct: 127 KIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALDVKKQKDLSGFY 186

Query: 183 FNLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPS 242
            +             E   P +  QSE++A          SA A+     +SP  P S +
Sbjct: 187 RHFLNQ------TVGEEVVPDRSAQSEEKAT--------SSAAAE-----RSPS-PESTA 246

Query: 243 QSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPK----R 302
              ++  +    ++ +      + +     +      K+P+    + D+ E++ K    +
Sbjct: 247 NRRESEAESHSDDDQVDVKPAFSKTTANNHAKRQYRQKSPLSDSDDGDERERERKEIKEK 304

Query: 303 DHHKRSEDAVAAAKERFLARKRTKE 320
            H  R  D    AKE+   R R K+
Sbjct: 307 SHKDRDRD---RAKEKERERMRDKD 304

[Close]

BLAST of CmaCh13G003450 vs. TrEMBL
Match: A0A0A0LJE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 3.3e-134
Identity = 263/323 (81.42%), Postives = 285/323 (88.24%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120
           AL EDPSVFDYDGVYDEMKEK V PRAYDREERKPKYIQNLMKKA+EREREQE+IYERKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180
           AKERSKDDHLYAGKDKFVT AYKKKLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF+
Sbjct: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 LQKNIAYGAGNAVEPREPPQKLQ---SEKQADVQKMKKHGESANADIVNDHQSPKYPSSP 240
           LQKN+AYGA NA+EP  PP+KLQ    EKQ +V  ++KH ES N D  NDH   +  + P
Sbjct: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLL-QNSNLP 240

Query: 241 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH 300
           S S KTIE+  HLEE L  SNKTTPS++ GTSPP LH+KTPV++QP+H+Q EQ PK DHH
Sbjct: 241 SCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHH 300

Query: 301 KRSEDAVAAAKERFLARKRTKEV 321
           KR+EDAVAAAKERFLARKR KEV
Sbjct: 301 KRNEDAVAAAKERFLARKRAKEV 322

[Close]

BLAST of CmaCh13G003450 vs. TrEMBL
Match: A0A061GV10_THECC (Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao GN=TCM_041289 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 4.0e-92
Identity = 211/327 (64.53%), Postives = 241/327 (73.70%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP PLGF+DDDDDDVEREISRQASKNK+LK+IEEQH+
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPLGFRDDDDDDVEREISRQASKNKSLKEIEEQHR 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPSVFDYDGVYDEMKEK V PR  DREER+ KYI NL+KKA++R+ EQE++YERK
Sbjct: 61  KALEEDPSVFDYDGVYDEMKEKVVRPRVQDREERQSKYIHNLIKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQS-------EKQADVQKMKKHGESANADIVNDHQSPK 240
           NL KN+A+GA N V PR P +  +S       EK+ DV K  +   ++NA          
Sbjct: 181 NLGKNVAFGA-NEVGPRMPEKHTESRKPEKKDEKEIDVIKRVQPLPNSNA---------- 240

Query: 241 YPSSPSQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQP 300
            P S   + +T ++    E   S  ++    DV    P     +T   KQP  D    QP
Sbjct: 241 -PESSGVTDRTQDETSSRENFESQDSRPITVDV---LPETALQETSSVKQPSVD----QP 300

Query: 301 KRDHHKRSEDAVAAAKERFLARKRTKE 320
           KRDHHKR EDAVAAA+ERFLARKR KE
Sbjct: 301 KRDHHKRGEDAVAAARERFLARKRAKE 308

[Close]

BLAST of CmaCh13G003450 vs. TrEMBL
Match: A0A0D2PQG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.9e-90
Identity = 204/320 (63.75%), Postives = 236/320 (73.75%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPSVFDYDGVYD MKE+ V PRA D EERKPKYI NLMKKA++R+ EQE++YERK
Sbjct: 61  KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERKPKYILNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N  +PR+P          ++++ +K  E    + VN       P S + 
Sbjct: 181 NLGKNVAFGA-NEAKPRKP----------ELREPEKEKEKEVLNRVNPLPDSVSPESSAV 240

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKR 300
             +T ++    E   S  +K    D   T P     +T  EKQP  D    QPK DHHKR
Sbjct: 241 IDRTRDESSFREIFDSRDSKPITED---TVPDTAVQETTSEKQPSVD----QPKSDHHKR 300

Query: 301 SEDAVAAAKERFLARKRTKE 320
             DAVAAA+ERFLARKR KE
Sbjct: 301 GADAVAAARERFLARKRAKE 302

[Close]

BLAST of CmaCh13G003450 vs. TrEMBL
Match: A0A0B0NEG8_GOSAR (Nuclear speckle splicing regulatory 1 OS=Gossypium arboreum GN=F383_10067 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.9e-89
Identity = 203/320 (63.44%), Postives = 234/320 (73.12%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPATRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDP VFDYDGVYD MKE+ V PRA DREERKPKYI NLMKKA++R+ EQE++YERK
Sbjct: 61  KALEEDPCVFDYDGVYDAMKEEVVRPRAQDREERKPKYIHNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N  +PREP          ++++ +K  E    + VN       P S + 
Sbjct: 181 NLGKNVAFGA-NEAKPREP----------ELREPEKEKEKEVLNRVNLLPDSIAPESSAV 240

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKR 300
             +T ++    E   S  +K    D     P     +T  EKQP       QPK DHHKR
Sbjct: 241 IDRTRDESSSQEIFDSRDSKPITEDA---VPDTAVQETTSEKQPP-----DQPKSDHHKR 300

Query: 301 SEDAVAAAKERFLARKRTKE 320
             DAVAAA+ERFLARKR KE
Sbjct: 301 GADAVAAARERFLARKRAKE 301

[Close]

BLAST of CmaCh13G003450 vs. TrEMBL
Match: W9S8T2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006586 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 3.2e-89
Identity = 198/324 (61.11%), Postives = 245/324 (75.62%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGL LR  P Q+KQP RPPLP  LGF +DDDDDVE+EISR ASKNK+LK+IEEQ +K
Sbjct: 1   MSKYGLNLR--PQQKKQPARPPLPTALGFGNDDDDDVEKEISRHASKNKSLKEIEEQQRK 60

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120
           AL EDPS FDYDGVYDEMK K + P+A DR+ERKPKYIQNL++KA++R+REQE++YERKL
Sbjct: 61  ALEEDPSAFDYDGVYDEMKAKTIQPKAQDRQERKPKYIQNLLRKAEQRQREQEIVYERKL 120

Query: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180
           AKERS++DHLYA KDKFVTSAYKKKLAEQAKWMEEERLRQ REEKDDVTKK+D+SDFYFN
Sbjct: 121 AKERSQEDHLYADKDKFVTSAYKKKLAEQAKWMEEERLRQRREEKDDVTKKTDLSDFYFN 180

Query: 181 LQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPSQS 240
           L KN+A+GA + +E R+     Q  +  +++K  KHG++A A+ ++ ++S     S   S
Sbjct: 181 LGKNVAFGAKD-IESRK-----QERRVEELRKPDKHGDAATAEALDRNRSVNNSHSSVGS 240

Query: 241 AKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLH--NKTPV---EKQPEHDQGEQQPKRD 300
           +K  E+  H  E       +  SD +  S P +   + TPV   E     +  E+QPKR+
Sbjct: 241 SKVREE--HQSETSLRKQPSESSDPKPVSDPDVKPVSDTPVAVEENSSVKEPPEEQPKRE 300

Query: 301 HHKRSEDAVAAAKERFLARKRTKE 320
           HHKR+EDA+AAAKERFLARKR KE
Sbjct: 301 HHKRTEDALAAAKERFLARKRAKE 314

[Close]

BLAST of CmaCh13G003450 vs. TAIR10
Match: AT2G27285.1 (AT2G27285.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 266.2 bits (679), Expect = 2.7e-71
Identity = 168/335 (50.15%), Postives = 226/335 (67.46%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPT-RPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQ+R  PSQ+KQ + RPPL     F +++D DVE+EISRQA+K KA K+IEEQHK
Sbjct: 1   MKKYGLQIRA-PSQKKQSSSRPPLRPASIFDEEEDHDVEKEISRQATKTKAHKEIEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPS F YD VYD+MK+KAVLPR  DREERKP+YIQNLMK+A+ RE+E E++YERK
Sbjct: 61  KALEEDPSAFSYDEVYDDMKQKAVLPRMQDREERKPRYIQNLMKQAERREKEHEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           LAKER KD+HL++ K+KFVT AYK+KL EQ KW+ EERLR+LREE+DDVTKK D+SDFYF
Sbjct: 121 LAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKDLSDFYF 180

Query: 181 NLQKNIAYGA-------GNAVEPREPPQKLQSEKQA--------DVQKMKKHGESANADI 240
           N+ KN+A+GA          +E +   +KL+ +++A        +V +++K  +S   ++
Sbjct: 181 NIGKNVAFGAREVEAKEAEKLEEQRKAEKLEEQRKAEKLEELRKEVTRVEKKRKSPEKEV 240

Query: 241 VNDHQSPKYPSSPSQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPE 300
             D  S ++ SS S+S + +E ++ + E    S+ T                    K   
Sbjct: 241 SPD--SGEFGSSRSKSLEPLEAEQAVSEKEMGSDGTEE-----------------RKSSI 300

Query: 301 HDQGEQQPKR-DHHKRSEDAVAAAKERFLARKRTK 319
            +  ++ PK  +  KR EDA+AAAKERFLARK+ K
Sbjct: 301 KEAAKEVPKAINDQKRREDAIAAAKERFLARKKAK 315

[Close]

BLAST of CmaCh13G003450 vs. TAIR10
Match: AT2G27280.1 (AT2G27280.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-60
Identity = 138/278 (49.64%), Postives = 196/278 (70.50%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPL--PAPLGFQDDDDDDVEREISRQASKNKALKDIEEQH 60
           + KYGLQ+R  PSQ+KQ +  PL   A +  +DD+++DVE+EISRQASK K+LK IE+QH
Sbjct: 142 IKKYGLQIRA-PSQKKQSSSRPLLRTASIFGEDDEENDVEKEISRQASKTKSLKKIEKQH 201

Query: 61  KKALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYER 120
           KKA+ EDPS F YD VYD++K +A LPR  DREE K +YIQ++MK+A+ RE+E E++YER
Sbjct: 202 KKAIEEDPSAFAYDEVYDDIKHEAALPRMQDREEHKSRYIQHIMKQAERREKEHEIVYER 261

Query: 121 KLAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFY 180
           KLAKER+KD+HLY+ K+KFVT  +K+KL EQ KW+EEERLR+LREE+DDVTKK+D+S+FY
Sbjct: 262 KLAKERAKDEHLYSDKEKFVTGPFKRKLEEQKKWLEEERLRELREERDDVTKKNDLSEFY 321

Query: 181 FNLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPS 240
            N+ KN+A+GA + +E RE  +  +  K   +++++K  E    +     +SP+   SP 
Sbjct: 322 INIGKNVAFGARD-IEAREAGRLKELRKVDRLEELRK--EETRKE--KKRKSPEKEVSPD 381

Query: 241 ------QSAKTIE-QDRHLEEHLSNSNKTTPSDVRGTS 270
                  S K+++ QD  ++E    + K T  D   T+
Sbjct: 382 SGDFGLSSKKSVKPQDASIKEEAKETQKATREDAIATA 413

[Close]

BLAST of CmaCh13G003450 vs. TAIR10
Match: AT1G55928.1 (AT1G55928.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 193.4 bits (490), Expect = 2.2e-49
Identity = 120/266 (45.11%), Postives = 178/266 (66.92%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           M+K+GLQLR   S++  P      AP+  +D++D+DV++EISRQASK K+LK  EEQHKK
Sbjct: 12  MNKFGLQLRKTLSKKVLPI-----APILGEDEEDNDVDKEISRQASKTKSLKKFEEQHKK 71

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREE-RKPKYIQNLMKKAKEREREQEVIYERK 120
           AL EDP  F YD VYD+ K++A LPR ++R+E  KP Y Q + +KA  R++E+E++YERK
Sbjct: 72  ALEEDPCAFAYDEVYDDTKQEAPLPRLHERQECNKPIYNQLMKEKADRRQKEREIVYERK 131

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           LAKER+K+ HL+  + K VT +YK+KL E+ +W+ EERLR+L EEKDDVTKK D+SDFYF
Sbjct: 132 LAKERAKEQHLFPDQVKVVTGSYKRKLEERDQWLSEERLRELGEEKDDVTKKKDLSDFYF 191

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPSQ 240
           N+ KN+A+GA + ++ RE  +  +  K   ++++++  ++ + + V    S    SS   
Sbjct: 192 NIGKNVAFGARD-IKARETERLKEQRKVPKLEELREKMKTESPERVVLPDSRDIGSSCRI 251

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDV 266
             +  E +    E   NS+ T   D+
Sbjct: 252 IVELQEAEHVASEEKMNSDATEERDL 271

[Close]

BLAST of CmaCh13G003450 vs. NCBI nr
Match: gi|449470301|ref|XP_004152856.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus])

HSP 1 Score: 486.1 bits (1250), Expect = 4.7e-134
Identity = 263/323 (81.42%), Postives = 285/323 (88.24%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120
           AL EDPSVFDYDGVYDEMKEK V PRAYDREERKPKYIQNLMKKA+EREREQE+IYERKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180
           AKERSKDDHLYAGKDKFVT AYKKKLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF+
Sbjct: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 LQKNIAYGAGNAVEPREPPQKLQ---SEKQADVQKMKKHGESANADIVNDHQSPKYPSSP 240
           LQKN+AYGA NA+EP  PP+KLQ    EKQ +V  ++KH ES N D  NDH   +  + P
Sbjct: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLL-QNSNLP 240

Query: 241 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH 300
           S S KTIE+  HLEE L  SNKTTPS++ GTSPP LH+KTPV++QP+H+Q EQ PK DHH
Sbjct: 241 SCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHH 300

Query: 301 KRSEDAVAAAKERFLARKRTKEV 321
           KR+EDAVAAAKERFLARKR KEV
Sbjct: 301 KRNEDAVAAAKERFLARKRAKEV 322

[Close]

BLAST of CmaCh13G003450 vs. NCBI nr
Match: gi|659069555|ref|XP_008450616.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo])

HSP 1 Score: 481.9 bits (1239), Expect = 8.8e-133
Identity = 261/323 (80.80%), Postives = 284/323 (87.93%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQP RPPLPAPLGFQDDDDD+VEREISRQASKNKALKDIEEQHKK
Sbjct: 13  MSKYGLQLRVKPSQQKQPKRPPLPAPLGFQDDDDDNVEREISRQASKNKALKDIEEQHKK 72

Query: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120
           AL EDPSVFDYDGVYDEMKEKAV PRAYDREERKPKYIQNLMKKA+EREREQE+IYERKL
Sbjct: 73  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 132

Query: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180
           AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF+
Sbjct: 133 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 192

Query: 181 LQKNIAYGAGNAVEPREPPQKLQ---SEKQADVQKMKKHGESANADIVNDHQSPKYPSSP 240
           LQKN+AYGA NA+EPR  P+KLQ    EKQ +V  ++KH ES N D  NDHQ        
Sbjct: 193 LQKNVAYGARNAIEPRATPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHQ-------- 252

Query: 241 SQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH 300
            Q++KTIE+  HLEE LS SNKTTPSD+ GTSPP LH+K  V+++P+H+  EQ PKRDHH
Sbjct: 253 LQNSKTIEEHSHLEERLSASNKTTPSDIEGTSPPTLHDKALVQERPKHELSEQPPKRDHH 312

Query: 301 KRSEDAVAAAKERFLARKRTKEV 321
           KR+EDAVAAAKERFLARKR KEV
Sbjct: 313 KRNEDAVAAAKERFLARKRAKEV 327

[Close]

BLAST of CmaCh13G003450 vs. NCBI nr
Match: gi|590586457|ref|XP_007015711.1| (Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 346.3 bits (887), Expect = 5.8e-92
Identity = 211/327 (64.53%), Postives = 241/327 (73.70%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP PLGF+DDDDDDVEREISRQASKNK+LK+IEEQH+
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPLGFRDDDDDDVEREISRQASKNKSLKEIEEQHR 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPSVFDYDGVYDEMKEK V PR  DREER+ KYI NL+KKA++R+ EQE++YERK
Sbjct: 61  KALEEDPSVFDYDGVYDEMKEKVVRPRVQDREERQSKYIHNLIKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQS-------EKQADVQKMKKHGESANADIVNDHQSPK 240
           NL KN+A+GA N V PR P +  +S       EK+ DV K  +   ++NA          
Sbjct: 181 NLGKNVAFGA-NEVGPRMPEKHTESRKPEKKDEKEIDVIKRVQPLPNSNA---------- 240

Query: 241 YPSSPSQSAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQP 300
            P S   + +T ++    E   S  ++    DV    P     +T   KQP  D    QP
Sbjct: 241 -PESSGVTDRTQDETSSRENFESQDSRPITVDV---LPETALQETSSVKQPSVD----QP 300

Query: 301 KRDHHKRSEDAVAAAKERFLARKRTKE 320
           KRDHHKR EDAVAAA+ERFLARKR KE
Sbjct: 301 KRDHHKRGEDAVAAARERFLARKRAKE 308

[Close]

BLAST of CmaCh13G003450 vs. NCBI nr
Match: gi|823123751|ref|XP_012477249.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Gossypium raimondii])

HSP 1 Score: 340.1 bits (871), Expect = 4.1e-90
Identity = 204/320 (63.75%), Postives = 236/320 (73.75%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDPSVFDYDGVYD MKE+ V PRA D EERKPKYI NLMKKA++R+ EQE++YERK
Sbjct: 61  KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERKPKYILNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N  +PR+P          ++++ +K  E    + VN       P S + 
Sbjct: 181 NLGKNVAFGA-NEAKPRKP----------ELREPEKEKEKEVLNRVNPLPDSVSPESSAV 240

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKR 300
             +T ++    E   S  +K    D   T P     +T  EKQP  D    QPK DHHKR
Sbjct: 241 IDRTRDESSFREIFDSRDSKPITED---TVPDTAVQETTSEKQPSVD----QPKSDHHKR 300

Query: 301 SEDAVAAAKERFLARKRTKE 320
             DAVAAA+ERFLARKR KE
Sbjct: 301 GADAVAAARERFLARKRAKE 302

[Close]

BLAST of CmaCh13G003450 vs. NCBI nr
Match: gi|728829958|gb|KHG09401.1| (Nuclear speckle splicing regulatory 1 [Gossypium arboreum])

HSP 1 Score: 337.4 bits (864), Expect = 2.7e-89
Identity = 203/320 (63.44%), Postives = 234/320 (73.12%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPATRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERK 120
           KAL EDP VFDYDGVYD MKE+ V PRA DREERKPKYI NLMKKA++R+ EQE++YERK
Sbjct: 61  KALEEDPCVFDYDGVYDAMKEEVVRPRAQDREERKPKYIHNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYF 180
           L KERSK+DHLYA KDKFVTSAYK+KLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 NLQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPSQ 240
           NL KN+A+GA N  +PREP          ++++ +K  E    + VN       P S + 
Sbjct: 181 NLGKNVAFGA-NEAKPREP----------ELREPEKEKEKEVLNRVNLLPDSIAPESSAV 240

Query: 241 SAKTIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKR 300
             +T ++    E   S  +K    D     P     +T  EKQP       QPK DHHKR
Sbjct: 241 IDRTRDESSSQEIFDSRDSKPITEDA---VPDTAVQETTSEKQPP-----DQPKSDHHKR 300

Query: 301 SEDAVAAAKERFLARKRTKE 320
             DAVAAA+ERFLARKR KE
Sbjct: 301 GADAVAAARERFLARKRAKE 301

The following BLAST results are available for this feature:

BLAST of CmaCh13G003450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NSRP1_BOVIN	1.2e-23	39.19	Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1	[more]
NSRP1_MOUSE	3.1e-21	31.25	Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1	[more]
NSRP1_RAT	2.7e-20	31.45	Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=1...	[more]
NSRP1_HUMAN	2.7e-20	32.20	Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1	[more]
NSRP1_DANRE	8.8e-16	29.23	Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2	[more]

BLAST of CmaCh13G003450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJE9_CUCSA	3.3e-134	81.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1	[more]
A0A061GV10_THECC	4.0e-92	64.53	Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao ...	[more]
A0A0D2PQG7_GOSRA	2.9e-90	63.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1	[more]
A0A0B0NEG8_GOSAR	1.9e-89	63.44	Nuclear speckle splicing regulatory 1 OS=Gossypium arboreum GN=F383_10067 PE=4 S...	[more]
W9S8T2_9ROSA	3.2e-89	61.11	Uncharacterized protein OS=Morus notabilis GN=L484_006586 PE=4 SV=1	[more]

BLAST of CmaCh13G003450 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27285.1	2.7e-71	50.15	Coiled-coil domain-containing protein 55 (DUF2040)	[more]
AT2G27280.1	2.8e-60	49.64	Coiled-coil domain-containing protein 55 (DUF2040)	[more]
AT1G55928.1	2.2e-49	45.11	Coiled-coil domain-containing protein 55 (DUF2040)	[more]

BLAST of CmaCh13G003450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470301\|ref\|XP_004152856.1\|	4.7e-134	81.42	PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus]	[more]
gi\|659069555\|ref\|XP_008450616.1\|	8.8e-133	80.80	PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo]	[more]
gi\|590586457\|ref\|XP_007015711.1\|	5.8e-92	64.53	Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao]	[more]
gi\|823123751\|ref\|XP_012477249.1\|	4.1e-90	63.75	PREDICTED: nuclear speckle splicing regulatory protein 1-like [Gossypium raimond...	[more]
gi\|728829958\|gb\|KHG09401.1\|	2.7e-89	63.44	Nuclear speckle splicing regulatory 1 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018612	DUF2040

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G003450.1	CmaCh13G003450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018612	Domain of unknown function DUF2040	PFAM	PF09745	DUF2040	coord: 55..171 score: 2.3
None	No IPR available	unknown	Coil	Coil	coord: 144..171 scor
None	No IPR available	PANTHER	PTHR30060	INNER MEMBRANE PROTEIN	coord: 1..320 score: 1.5E
None	No IPR available	PANTHER	PTHR30060:SF0	COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..320 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G003450	CmoCh13G003680	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G003450	Lsi02G011940	Bottle gourd (USVL1VR-Ls)	cmalsiB204
CmaCh13G003450	Carg28014	Silver-seed gourd	carcmaB0006

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh13G003450	CmaCh18G006390	Cucurbita maxima (Rimu)	cmacmaB211

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G003450	Melon (DHL92) v3.6.1	cmamedB221
CmaCh13G003450	Cucumber (Chinese Long) v3	cmacucB0253
CmaCh13G003450	Watermelon (97103) v2	cmawmbB208
CmaCh13G003450	Wax gourd	cmawgoB0260
CmaCh13G003450	Cucumber (Gy14) v1	cgycmaB0883
CmaCh13G003450	Wild cucumber (PI 183967)	cmacpiB212
CmaCh13G003450	Wild cucumber (PI 183967)	cmacpiB222
CmaCh13G003450	Cucumber (Chinese Long) v2	cmacuB210
CmaCh13G003450	Cucumber (Chinese Long) v2	cmacuB222
CmaCh13G003450	Melon (DHL92) v3.5.1	cmameB195
CmaCh13G003450	Watermelon (Charleston Gray)	cmawcgB180
CmaCh13G003450	Watermelon (97103) v1	cmawmB202
CmaCh13G003450	Cucurbita pepo (Zucchini)	cmacpeB209
CmaCh13G003450	Cucumber (Gy14) v2	cgybcmaB068
CmaCh13G003450	Cucumber (Gy14) v2	cgybcmaB078