CmoCh13G001610 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G001610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Histone H2A
Location	Cmo_Chr13 : 1037817 .. 1040897 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAGTTGTTGTGGTACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGTCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACAAAGGAGCCTTTACTGCTTCCATAGAGTTCAACAGCTTTTGTAATTTGCAGAGGGTAACAAATTTCGGAGGTTCTCTTTTGTCTATTATTTTAAGTCGTGGTTTTGGTTATAATCTTCGGTCTCTATTGTGTTTAGGATTGAACGGATCGAGAAATCTAGATAAGTAATGATTTCGGTAAATTTTCTAAACCCTCCAATTATTAGGATACAATCTTAGATAAAATATATTAAAAGCTCACAAACAAACACAAATCGATCAATACTTGGGCATGAGTATTTCTAAAGAGGCCGAGGTACCACTCTGGCAAACTTATTAATACGGATTCTTAATATAATTTATATATTTTTATTTGGCTAGGTCAACCCAAAGGTTTTATCTATGAACCCGAAACTGAACCGATTCAATTCGGGTTCAGAAAAAATGAACACAACCCTACCCAAAATGCTAATCCAACTCAACCCTTATCGTTCGGGTCGGATTGGTTCGAGTTGTCGGGTTGAATGTACACCCCTATTAGATTCTTTCGTTTAGTCATATTATCAACATTTTTTTACATTAAAAAAATTGAAAAACAAAAAATATCCTCTCTTCTAATTGGTCCATTTTGAATAACGCGGATCGCTCTACAGTCTATCCACACCCGTCGATTGAACTGTATCGTACGGTCAAACGTGCACCCATTTCTGAGTTCGTCTCCATCGTCAAATGCTCGTTGTTTCATACCGCTCTATAAAAACATTACCTCAATTTCAGAGCTTCTCATCGTCATATCCACTGACCCAAATCTGTTTTCCTGTAATCTCTGCAACTGCCTTTGATTTTCCGGCGACCAGGGTCAAGTTCCGATGGATTCTAGCGCCAAGTTAAAGAAGGGAGCAGGTGGAAGAAAGGGCGGCGGTCCGAAGAAGAAGCCAGTTTCCCGCTCCGTTAAGGCTGGTCTCCAGTTCCCCGTCGGTAGAATTGGTCGGTATTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCCGCCGTTCTTGAGTATCTCGCCGCCGAGGTACTTTCTGAACTCCTTCTGCTTTCTAGATCTGTGTTGCTTTCTTTTGGATGTGGATGCTTAGGGATTCGAATTTAATTCTGGAATTAGATTCTTAACTCATCGATTGGCTGTTGTTACGTTGAATTTTGCTAGATCATTATGAACTATTTGATTTGAGGAAAAGATTAGGAAATTCAAAGAACTGAGTGAATTAGAAATGAAATATCTCGTGAATTTTAGCTTCGGTTGACTAATTATTGCTTTTGACATGTGTTTGCTGTAGCTTGGAACATAATTATTGATTGGAATGTTGAATTCAACTTGATTTCCTTATTGGATTTGGTGAGCATGAATATGATTGAATCCTTGGGTATATAGATCCTAGATTTCAAATAAACATCGAATCCTATGCTTTTGATCTCTAATCTATCACAAACGGGGGCAAATTAGGTGTTGGAATTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGAATAATTCCTAGGCATGTATTGTTGGCCATAAGAAACGATGAAGAGCTTGGGAAATTGCTAGCCGGCGTAACGATTGCACATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCTAAGAAGAGTGAAAAAGCAGCCACTAAAGAACCTAAATCTCCATCAAAGGCCTCTAAGGCTACAAAATCCCCTAAAAAGGCTTAGGTTCTTTTGTTCAATCTGAAAAACTTTGACTTGTTCTTTGCCCATTTGTATGTACTTTGTTGCCTTTTTAGAGTCGTCTTCTGTGTTGTTTATTAATGTAAGCTCAAACCTGATCAATTTGAACACTCTGTATCGCTCCCATCATCATCTTAATGATCAATTCCTGTACTGGTTATGATTGTTTAGCCATCAATTCTTTTTCTTCATTTTGCTAATCTTTGATTGGCTTGTACGGATATATGAGATAGTGAGCTTGGAATCACGGACCTTTACCATATATCAATGAAGATGTATTCCTTATATATAAACCTATGATCATCTCCTTGGTTATCCAACGTGGGACTCCCTTTCATTAATTTTTCAACAATCCTCTTATTGGACAAAGTACACCATAGAATTTCCTTTCCGG

mRNA sequence

ATGTTCAAGTTGTTGTGGTACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGTCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGGTCAAGTTCCGATGGATTCTAGCGCCAAGTTAAAGAAGGGAGCAGGTGGAAGAAAGGGCGGCGGTCCGAAGAAGAAGCCAGTTTCCCGCTCCGTTAAGGCTGGTCTCCAGTTCCCCGTCGGTAGAATTGGTCGGTATTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCCGCCGTTCTTGAGTATCTCGCCGCCGAGGTACTTTCTGAACTCCTTCTGCTTTCTAGATCTGTGTTGCTTTCTTTTGGATCTTGGAACATAATTATTGATTGGAATGTTGAATTCAACTTGATTTCCTTATTGGATTTGGTGTTGGAATTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGAATAATTCCTAGGCATGTATTGTTGGCCATAAGAAACGATGAAGAGCTTGGGAAATTGCTAGCCGGCGTAACGATTGCACATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCTAAGAAGAGTGAAAAAGCAGCCACTAAAGAACCTAAATCTCCATCAAAGGCCTCTAAGGCTACAAAATCCCCTAAAAAGGCTTAGGTTCTTTTGTTCAATCTGAAAAACTTTGACTTGTTCTTTGCCCATTTGTATGTACTTTGTTGCCTTTTTAGAGTCGTCTTCTGTGTTGTTTATTAATGTAAGCTCAAACCTGATCAATTTGAACACTCTGTATCGCTCCCATCATCATCTTAATGATCAATTCCTGTACTGGTTATGATTGTTTAGCCATCAATTCTTTTTCTTCATTTTGCTAATCTTTGATTGGCTTGTACGGATATATGAGATAGTGAGCTTGGAATCACGGACCTTTACCATATATCAATGAAGATGTATTCCTTATATATAAACCTATGATCATCTCCTTGGTTATCCAACGTGGGACTCCCTTTCATTAATTTTTCAACAATCCTCTTATTGGACAAAGTACACCATAGAATTTCCTTTCCGG

Coding sequence (CDS)

ATGTTCAAGTTGTTGTGGTACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGTCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGTGACTTGTCGCAACAAATCACGACATAGGAGCCTATACTACGATCGTTGTCATCCTAACGAAATTCATCACTTGACGCCATGGGGTCAAGTTCCGATGGATTCTAGCGCCAAGTTAAAGAAGGGAGCAGGTGGAAGAAAGGGCGGCGGTCCGAAGAAGAAGCCAGTTTCCCGCTCCGTTAAGGCTGGTCTCCAGTTCCCCGTCGGTAGAATTGGTCGGTATTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACCGGAGCTCCGGTCTACTTGGCCGCCGTTCTTGAGTATCTCGCCGCCGAGGTACTTTCTGAACTCCTTCTGCTTTCTAGATCTGTGTTGCTTTCTTTTGGATCTTGGAACATAATTATTGATTGGAATGTTGAATTCAACTTGATTTCCTTATTGGATTTGGTGTTGGAATTGGCTGGAAATGCAGCCCGAGACAACAAGAAGAACAGAATAATTCCTAGGCATGTATTGTTGGCCATAAGAAACGATGAAGAGCTTGGGAAATTGCTAGCCGGCGTAACGATTGCACATGGTGGTGTTCTTCCAAACATAAACCCAGTTCTGTTGCCTAAGAAGAGTGAAAAAGCAGCCACTAAAGAACCTAAATCTCCATCAAAGGCCTCTAAGGCTACAAAATCCCCTAAAAAGGCTTAG

Homology

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BLAST of CmoCh13G001610 vs. Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.7e-39
Identity = 114/193 (59.07%), Postives = 125/193 (64.77%), Query Frame = 1


Query: 279 MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 338
           MD+ AKLKKGAG RKGGGPKKKPVSRSVKAGLQFPVGRIGR+LK GRYA+RVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 339 AAVLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNK 398
           AAVLEYLAAEVL      +R         N II  +V   + +  +L   LAG       
Sbjct: 61  AAVLEYLAAEVLELAGNAARD-----NKKNRIIPRHVLLAVRNDEELGKLLAG------- 120

Query: 399 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEK---AATKEPKSP 458
                                    VTIAHGGVLPNINPVLLPKK+EK   AATKEPKSP
Sbjct: 121 -------------------------VTIAHGGVLPNINPVLLPKKAEKAAAAATKEPKSP 153

Query: 459 SKASKATKSPKKA 469
              +KATKSPKKA
Sbjct: 181 ---AKATKSPKKA 153

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BLAST of CmoCh13G001610 vs. Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.0e-36
Identity = 107/192 (55.73%), Postives = 121/192 (63.02%), Query Frame = 1


Query: 279 MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 338
           MD+S K KKGAGGRKGGGP+KK V+RS++AGLQFPVGRIGRYLK GRYA+RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 339 AAVLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNK 398
           AAVLEYLAAEVL      +R         N II  +V   + +  +L   LAG       
Sbjct: 61  AAVLEYLAAEVLELAGNAARD-----NKKNRIIPRHVLLAVRNDEELGKLLAG------- 120

Query: 399 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAAT--KEPKSPS 458
                                    VTIAHGGVLPNINPVLLPKK+E++ T  KEPKSP 
Sbjct: 121 -------------------------VTIAHGGVLPNINPVLLPKKTERSNTVSKEPKSPK 153

Query: 459 KASKATKSPKKA 469
              KA KSPKKA
Sbjct: 181 --PKAGKSPKKA 153

[Close]

BLAST of CmoCh13G001610 vs. Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.1e-34
Identity = 107/190 (56.32%), Postives = 119/190 (62.63%), Query Frame = 1


Query: 279 MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 338
           MD+S K KKGAGGRKGG P+KK V+RS +AGLQFPVGRIGRYLK GRYA+RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGG-PRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 339 AAVLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNK 398
           AAVLEYLAAEVL      +R         N II  +V   + +  +L   LAG       
Sbjct: 61  AAVLEYLAAEVLELAGNAARD-----NKKNRIIPRHVLLAVRNDEELGKLLAG------- 120

Query: 399 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAATKEPKSPSKA 458
                                    VTIAHGGVLPNINP+LLPKK+EKAAT   KSP   
Sbjct: 121 -------------------------VTIAHGGVLPNINPILLPKKNEKAAT-TTKSP--- 148

Query: 459 SKATKSPKKA 469
           SKATKSPKKA
Sbjct: 181 SKATKSPKKA 148

[Close]

BLAST of CmoCh13G001610 vs. Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.7e-34
Identity = 105/193 (54.40%), Postives = 120/193 (62.18%), Query Frame = 1


Query: 279 MDSSAKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 338
           MDS  K+KKGA GR+ GGGPKKKPVSRSVK                        +G    
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVK------------------------SGLQFP 60

Query: 339 LAAVLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDN 398
           +  +  YL     S+ +     V L+      ++++        L   VLELAGNAARDN
Sbjct: 61  VGRIGRYLKKGRYSKRVGTGAPVYLA-----AVLEY--------LAAEVLELAGNAARDN 120

Query: 399 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAA--TKEPKSP 458
           KKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAA  TK PKSP
Sbjct: 121 KKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSP 153

Query: 459 SKASKATKSPKKA 469
              SKATKSPKK+
Sbjct: 181 ---SKATKSPKKS 153

[Close]

BLAST of CmoCh13G001610 vs. Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.2e-34
Identity = 101/190 (53.16%), Postives = 120/190 (63.16%), Query Frame = 1


Query: 279 MDSSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 338
           MD+S K KKGAGGRKGGGP+KK V+RSV+AGLQFPVGR+GR+LK GRYA+RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYL 60

Query: 339 AAVLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNK 398
           AAVLEYLAAEVL      +R               + + N IS   L+L     A R+++
Sbjct: 61  AAVLEYLAAEVLELAGNAAR---------------DNKKNRISPRHLLL-----AVRNDE 120

Query: 399 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAATKEPKSPSKA 458
           +   +   V +A                 +GGVLPNINPVLLPK+ E AA   PKSPSKA
Sbjct: 121 ELGKLLAGVTIA-----------------YGGVLPNINPVLLPKRKENAAASTPKSPSKA 150

Query: 459 SKATKSPKKA 469
               KSPKKA
Sbjct: 181 K---KSPKKA 150

[Close]

BLAST of CmoCh13G001610 vs. TrEMBL
Match: F4KCF4_ARATH (Histone H2A OS=Arabidopsis thaliana GN=HTA12 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.0e-57
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 279 MDSSAKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 338
           MDS  K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 339 LAAVLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDN 398
           LAAVLEYLAAE              S G  ++         + S    VLELAGNAARDN
Sbjct: 61  LAAVLEYLAAEN-------------SCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDN 120

Query: 399 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAA--TKEPKSP 458
           KKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAA  TK PKSP
Sbjct: 121 KKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSP 177

Query: 459 SKASKATKSPKKA 469
              SKATKSPKK+
Sbjct: 181 ---SKATKSPKKS 177

[Close]

BLAST of CmoCh13G001610 vs. TrEMBL
Match: A0A0P0V312_ORYSJ (Histone H2A OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.5e-55
Identity = 139/191 (72.77%), Postives = 148/191 (77.49%), Query Frame = 1


Query: 281 SSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAA 340
           +  KLKKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYA+R+GTGAPVYLAA
Sbjct: 92  AGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAA 151

Query: 341 VLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKN 400
           VLEYLAAEV++  L  + +  LS                 S    VLELAGNAARDNKKN
Sbjct: 152 VLEYLAAEVIT--LAHAHAPTLS-----------------STSSAVLELAGNAARDNKKN 211

Query: 401 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK-SEKAAT--KEPKSPSK 460
           RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK +EKAA   KE KSP K
Sbjct: 212 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAKSPKK 261

Query: 461 ASKATKSPKKA 469
           A  A KSPKKA
Sbjct: 272 A--AGKSPKKA 261

[Close]

BLAST of CmoCh13G001610 vs. TrEMBL
Match: B6SZ05_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55
Identity = 137/189 (72.49%), Postives = 146/189 (77.25%), Query Frame = 1


Query: 281 SSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAA 340
           +  K KKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYA+RVGTGAPVYLAA
Sbjct: 8   AGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 67

Query: 341 VLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKN 400
           VLEYLAAEVL +    S  VL+    W   I+  V     SL D VLELAGNAARDNKK 
Sbjct: 68  VLEYLAAEVL-QFEPSSLFVLI----WRRSINSCVPIRFASLFDQVLELAGNAARDNKKT 127

Query: 401 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK-SEKAATKEPKSPSKAS 460
           RIIPRHVLLAIRNDEELGKLL GVTIAHGGVLPNINPVLLPKK +EKA++   K      
Sbjct: 128 RIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGSKEAKSPK 187

Query: 461 KATKSPKKA 469
           KA KSPKKA
Sbjct: 188 KAAKSPKKA 191

[Close]

BLAST of CmoCh13G001610 vs. TrEMBL
Match: C0HIB6_MAIZE (Histone H2A OS=Zea mays GN=his2a1 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55
Identity = 137/189 (72.49%), Postives = 146/189 (77.25%), Query Frame = 1


Query: 281 SSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAA 340
           +  K KKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYA+RVGTGAPVYLAA
Sbjct: 8   AGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 67

Query: 341 VLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKN 400
           VLEYLAAEVL +    S  VL+    W   I+  V     SL D VLELAGNAARDNKK 
Sbjct: 68  VLEYLAAEVL-QFEPSSLFVLI----WRRSINSCVPIRFASLFDQVLELAGNAARDNKKT 127

Query: 401 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK-SEKAATKEPKSPSKAS 460
           RIIPRHVLLAIRNDEELGKLL GVTIAHGGVLPNINPVLLPKK +EKA++   K      
Sbjct: 128 RIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSVGSKEAKSPK 187

Query: 461 KATKSPKKA 469
           KA KSPKKA
Sbjct: 188 KAAKSPKKA 191

[Close]

BLAST of CmoCh13G001610 vs. TrEMBL
Match: A0A0D3G2I3_9ORYZ (Histone H2A OS=Oryza barthii PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.1e-52
Identity = 134/186 (72.04%), Postives = 138/186 (74.19%), Query Frame = 1


Query: 284 KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAVLE 343
           K  K A GRK GGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYA+RVGTGAPVYLAAVLE
Sbjct: 8   KAAKKAVGRKLGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLE 67

Query: 344 YLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKNRII 403
           YLAAE                 SW            I LL  VLELAGNAARDNKKNRII
Sbjct: 68  YLAAEASH--------------SW---------LTGIVLLMQVLELAGNAARDNKKNRII 127

Query: 404 PRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAATKEPKSPSKAS--KA 463
           PRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+ + A K    P+KAS  KA
Sbjct: 128 PRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADK----PAKASKDKA 166

Query: 464 TKSPKK 468
            KSPKK
Sbjct: 188 AKSPKK 166

[Close]

BLAST of CmoCh13G001610 vs. TAIR10
Match: AT5G02560.2 (AT5G02560.2 histone H2A 12)

HSP 1 Score: 229.6 bits (584), Expect = 4.1e-60
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 279 MDSSAKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 338
           MDS  K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 339 LAAVLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDN 398
           LAAVLEYLAAE              S G  ++         + S    VLELAGNAARDN
Sbjct: 61  LAAVLEYLAAEN-------------SCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDN 120

Query: 399 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAA--TKEPKSP 458
           KKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAA  TK PKSP
Sbjct: 121 KKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSP 177

Query: 459 SKASKATKSPKKA 469
              SKATKSPKK+
Sbjct: 181 ---SKATKSPKKS 177

[Close]

BLAST of CmoCh13G001610 vs. TAIR10
Match: AT5G27670.1 (AT5G27670.1 histone H2A 7)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-27
Identity = 91/188 (48.40%), Postives = 110/188 (58.51%), Query Frame = 1


Query: 281 SSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAA 340
           ++ K  +GAGGRK GG +KK VS+SVKAGLQFPVGRI RYLK GRYA R G+GAPVYLAA
Sbjct: 6   ATTKPTRGAGGRK-GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAA 65

Query: 341 VLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKN 400
           VLEYLAAEVL      +R               + + N I+   L L +      D +  
Sbjct: 66  VLEYLAAEVLELAGNAAR---------------DNKKNRINPRHLCLAI----RNDEELG 125

Query: 401 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAATKEPKSPSKASK 460
           R++                   GVTIA GGVLPNINPVLLPKKS  ++++  K     + 
Sbjct: 126 RLL------------------HGVTIASGGVLPNINPVLLPKKSTASSSQAEK-----AS 150

Query: 461 ATKSPKKA 469
           ATKSPKKA
Sbjct: 186 ATKSPKKA 150

[Close]

BLAST of CmoCh13G001610 vs. TAIR10
Match: AT5G59870.1 (AT5G59870.1 histone H2A 6)

HSP 1 Score: 116.3 bits (290), Expect = 5.0e-26
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 386 VLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS- 445
           VLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIAHGGVLPNIN VLLPKKS 
Sbjct: 72  VLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKSA 131

Query: 446 ----EKAATKEP-KSPSKA 459
               E+ ATK P KSP KA
Sbjct: 132 TKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of CmoCh13G001610 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-20
Identity = 76/162 (46.91%), Postives = 89/162 (54.94%), Query Frame = 1


Query: 288 GAGGRKGGGPKKKP---VSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAVLEY 347
           G+G  KGG  K K    VSRS KAGLQFPVG         R AR               +
Sbjct: 6   GSGTTKGGRGKPKATKSVSRSSKAGLQFPVG---------RIAR---------------F 65

Query: 348 LAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKNRIIP 407
           L A   +E +     V LS      ++++        L   VLELAGNAARDNKK RI+P
Sbjct: 66  LKAGKYAERVGAGAPVYLS-----AVLEY--------LAAEVLELAGNAARDNKKTRIVP 125

Query: 408 RHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEK 447
           RH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP K  K
Sbjct: 126 RHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGK 130

[Close]

BLAST of CmoCh13G001610 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-19
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 386 VLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 445
           VLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct: 64  VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

[Close]

BLAST of CmoCh13G001610 vs. NCBI nr
Match: gi|334187383|ref|NP_001190208.1| (histone H2A 12 [Arabidopsis thaliana])

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-56
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 279 MDSSAKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 338
           MDS  K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 339 LAAVLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDN 398
           LAAVLEYLAAE              S G  ++         + S    VLELAGNAARDN
Sbjct: 61  LAAVLEYLAAEN-------------SCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDN 120

Query: 399 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAA--TKEPKSP 458
           KKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAA  TK PKSP
Sbjct: 121 KKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSP 177

Query: 459 SKASKATKSPKKA 469
              SKATKSPKK+
Sbjct: 181 ---SKATKSPKKS 177

[Close]

BLAST of CmoCh13G001610 vs. NCBI nr
Match: gi|937896348|dbj|BAS72328.1| (Os01g0502700 [Oryza sativa Japonica Group])

HSP 1 Score: 225.3 bits (573), Expect = 2.2e-55
Identity = 139/191 (72.77%), Postives = 148/191 (77.49%), Query Frame = 1


Query: 281 SSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAA 340
           +  KLKKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYA+R+GTGAPVYLAA
Sbjct: 92  AGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAA 151

Query: 341 VLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKN 400
           VLEYLAAEV++  L  + +  LS                 S    VLELAGNAARDNKKN
Sbjct: 152 VLEYLAAEVIT--LAHAHAPTLS-----------------STSSAVLELAGNAARDNKKN 211

Query: 401 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK-SEKAAT--KEPKSPSK 460
           RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK +EKAA   KE KSP K
Sbjct: 212 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAKSPKK 261

Query: 461 ASKATKSPKKA 469
           A  A KSPKKA
Sbjct: 272 A--AGKSPKKA 261

[Close]

BLAST of CmoCh13G001610 vs. NCBI nr
Match: gi|195616516|gb|ACG30088.1| (histone H2A [Zea mays])

HSP 1 Score: 224.9 bits (572), Expect = 2.8e-55
Identity = 137/189 (72.49%), Postives = 146/189 (77.25%), Query Frame = 1


Query: 281 SSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAA 340
           +  K KKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYA+RVGTGAPVYLAA
Sbjct: 8   AGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 67

Query: 341 VLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKN 400
           VLEYLAAEVL +    S  VL+    W   I+  V     SL D VLELAGNAARDNKK 
Sbjct: 68  VLEYLAAEVL-QFEPSSLFVLI----WRRSINSCVPIRFASLFDQVLELAGNAARDNKKT 127

Query: 401 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK-SEKAATKEPKSPSKAS 460
           RIIPRHVLLAIRNDEELGKLL GVTIAHGGVLPNINPVLLPKK +EKA++   K      
Sbjct: 128 RIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGSKEAKSPK 187

Query: 461 KATKSPKKA 469
           KA KSPKKA
Sbjct: 188 KAAKSPKKA 191

[Close]

BLAST of CmoCh13G001610 vs. NCBI nr
Match: gi|223945371|gb|ACN26769.1| (unknown [Zea mays])

HSP 1 Score: 224.9 bits (572), Expect = 2.8e-55
Identity = 137/189 (72.49%), Postives = 146/189 (77.25%), Query Frame = 1


Query: 281 SSAKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAA 340
           +  K KKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLK GRYA+RVGTGAPVYLAA
Sbjct: 8   AGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 67

Query: 341 VLEYLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKN 400
           VLEYLAAEVL +    S  VL+    W   I+  V     SL D VLELAGNAARDNKK 
Sbjct: 68  VLEYLAAEVL-QFEPSSLFVLI----WRRSINSCVPIRFASLFDQVLELAGNAARDNKKT 127

Query: 401 RIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK-SEKAATKEPKSPSKAS 460
           RIIPRHVLLAIRNDEELGKLL GVTIAHGGVLPNINPVLLPKK +EKA++   K      
Sbjct: 128 RIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSVGSKEAKSPK 187

Query: 461 KATKSPKKA 469
           KA KSPKKA
Sbjct: 188 KAAKSPKKA 191

[Close]

BLAST of CmoCh13G001610 vs. NCBI nr
Match: gi|45680447|gb|AAS75248.1| (putative histone H2A [Oryza sativa Japonica Group])

HSP 1 Score: 212.2 bits (539), Expect = 1.9e-51
Identity = 134/186 (72.04%), Postives = 139/186 (74.73%), Query Frame = 1


Query: 284 KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYLAAVLE 343
           K  K A GRK GGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYA+RVGTGAPVYLAAVLE
Sbjct: 8   KAAKKAVGRKLGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLE 67

Query: 344 YLAAEVLSELLLLSRSVLLSFGSWNIIIDWNVEFNLISLLDLVLELAGNAARDNKKNRII 403
           YLAAE          S  LS    N            S   +VLELAGNAARDNKKNRII
Sbjct: 68  YLAAEA---------SHCLSLPLPNP-----------SKPSMVLELAGNAARDNKKNRII 127

Query: 404 PRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAATKEPKSPSKAS--KA 463
           PRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+ + A K    P+KAS  KA
Sbjct: 128 PRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADK----PAKASKDKA 169

Query: 464 TKSPKK 468
            KSPKK
Sbjct: 188 AKSPKK 169

The following BLAST results are available for this feature:

BLAST of CmoCh13G001610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2A_EUPES	3.7e-39	59.07	Histone H2A OS=Euphorbia esula PE=2 SV=1	[more]
H2A2_MEDTR	5.0e-36	55.73	Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1	[more]
H2A1_MEDTR	2.1e-34	56.32	Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1	[more]
H2A4_ARATH	4.7e-34	54.40	Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1	[more]
H2A1_PEA	6.2e-34	53.16	Histone H2A.1 OS=Pisum sativum PE=2 SV=1	[more]

BLAST of CmoCh13G001610 vs. TrEMBL


Match Name	E-value	Identity	Description
F4KCF4_ARATH	8.0e-57	71.50	Histone H2A OS=Arabidopsis thaliana GN=HTA12 PE=3 SV=1	[more]
A0A0P0V312_ORYSJ	1.5e-55	72.77	Histone H2A OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=3 SV=1	[more]
B6SZ05_MAIZE	2.0e-55	72.49	Histone H2A OS=Zea mays PE=2 SV=1	[more]
C0HIB6_MAIZE	2.0e-55	72.49	Histone H2A OS=Zea mays GN=his2a1 PE=2 SV=1	[more]
A0A0D3G2I3_9ORYZ	2.1e-52	72.04	Histone H2A OS=Oryza barthii PE=3 SV=1	[more]

BLAST of CmoCh13G001610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02560.2	4.1e-60	71.50	histone H2A 12	[more]
AT5G27670.1	4.5e-27	48.40	histone H2A 7	[more]
AT5G59870.1	5.0e-26	82.28	histone H2A 6	[more]
AT1G54690.1	1.1e-20	46.91	gamma histone variant H2AX	[more]
AT3G20670.1	1.2e-19	76.27	histone H2A 13	[more]

BLAST of CmoCh13G001610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|334187383\|ref\|NP_001190208.1\|	1.2e-56	71.50	histone H2A 12 [Arabidopsis thaliana]	[more]
gi\|937896348\|dbj\|BAS72328.1\|	2.2e-55	72.77	Os01g0502700 [Oryza sativa Japonica Group]	[more]
gi\|195616516\|gb\|ACG30088.1\|	2.8e-55	72.49	histone H2A [Zea mays]	[more]
gi\|223945371\|gb\|ACN26769.1\|	2.8e-55	72.49	unknown [Zea mays]	[more]
gi\|45680447\|gb\|AAS75248.1\|	1.9e-51	72.04	putative histone H2A [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G001610.1	CmoCh13G001610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 300..322 score: 1.3E-20coord: 344..357 score: 1.3E-20coord: 329..344 score: 1.3
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 289..446 score: 1.1
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 388..445 score: 2.2E-60coord: 292..350 score: 2.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 291..352 score: 1.06E-35coord: 390..449 score: 1.06
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 387..468 score: 4.0E-105coord: 279..349 score: 4.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G001610	Cla013285	Watermelon (97103) v1	cmowmB200
CmoCh13G001610	ClCG02G020390	Watermelon (Charleston Gray)	cmowcgB183
CmoCh13G001610	Lsi10G013530	Bottle gourd (USVL1VR-Ls)	cmolsiB184
CmoCh13G001610	Lsi02G013960	Bottle gourd (USVL1VR-Ls)	cmolsiB191
CmoCh13G001610	Cp4.1LG20g08780	Cucurbita pepo (Zucchini)	cmocpeB202
CmoCh13G001610	Cp4.1LG02g13170	Cucurbita pepo (Zucchini)	cmocpeB205
CmoCh13G001610	MELO3C020706.2	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G001610	MELO3C013682.2	Melon (DHL92) v3.6.1	cmomedB197
CmoCh13G001610	CsaV3_1G033640	Cucumber (Chinese Long) v3	cmocucB0236
CmoCh13G001610	Cla97C02G046350	Watermelon (97103) v2	cmowmbB207
CmoCh13G001610	Cla97C03G052950	Watermelon (97103) v2	cmowmbB209
CmoCh13G001610	Bhi08G000330	Wax gourd	cmowgoB0266
CmoCh13G001610	Bhi10G000543	Wax gourd	cmowgoB0237
CmoCh13G001610	Carg12336	Silver-seed gourd	carcmoB0594
CmoCh13G001610	Carg21033	Silver-seed gourd	carcmoB0989

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G001610	CmoCh01G005910	Cucurbita moschata (Rifu)	cmocmoB173

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G001610	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G001610	Cucurbita maxima (Rimu)	cmacmoB458
CmoCh13G001610	Cucurbita maxima (Rimu)	cmacmoB543
CmoCh13G001610	Cucurbita maxima (Rimu)	cmacmoB577
CmoCh13G001610	Wild cucumber (PI 183967)	cmocpiB206
CmoCh13G001610	Wild cucumber (PI 183967)	cmocpiB219
CmoCh13G001610	Cucumber (Chinese Long) v2	cmocuB204
CmoCh13G001610	Cucumber (Chinese Long) v2	cmocuB216
CmoCh13G001610	Melon (DHL92) v3.5.1	cmomeB177
CmoCh13G001610	Melon (DHL92) v3.5.1	cmomeB178
CmoCh13G001610	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G001610	Watermelon (Charleston Gray)	cmowcgB180
CmoCh13G001610	Watermelon (Charleston Gray)	cmowcgB184
CmoCh13G001610	Watermelon (97103) v1	cmowmB173
CmoCh13G001610	Watermelon (97103) v1	cmowmB197
CmoCh13G001610	Bottle gourd (USVL1VR-Ls)	cmolsiB186
CmoCh13G001610	Cucumber (Gy14) v2	cgybcmoB069
CmoCh13G001610	Cucumber (Gy14) v2	cgybcmoB454
CmoCh13G001610	Cucumber (Gy14) v2	cgybcmoB711
CmoCh13G001610	Melon (DHL92) v3.6.1	cmomedB198
CmoCh13G001610	Melon (DHL92) v3.6.1	cmomedB218
CmoCh13G001610	Cucumber (Chinese Long) v3	cmocucB0248
CmoCh13G001610	Cucumber (Chinese Long) v3	cmocucB0255
CmoCh13G001610	Watermelon (97103) v2	cmowmbB204
CmoCh13G001610	Watermelon (97103) v2	cmowmbB217
CmoCh13G001610	Wax gourd	cmowgoB0238
CmoCh13G001610	Cucurbita moschata (Rifu)	cmocmoB180
CmoCh13G001610	Cucumber (Gy14) v1	cgycmoB0615