Carg12336 (gene) Silver-seed gourd

Overview
NameCarg12336
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHistone H2A
LocationCucurbita_argyrosperma_scaffold_074 : 387992 .. 389383 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATAATTCTTCCCGCAAAACCAACTTCTCATTGTTATATCCACTGGCCTAATTTCATTTTCCTCTAATTCCTTCAAGTTCCTCTGATTTCCGGCGATCAGGTCAGGTTTCGATGGACGCAAGCGGCAAGTTGAAGAAGGGAGCTGGTGGCAGAAAGGGCGGTGGCCCGAAGAAGAAGCCTGTTTCTCGCTCTGTTAAGGCCGGCCTCCAGTTTCCCGTCGGTAGAATTGGCAGATATTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACTGGAGCTCCGGTCTACATGGCCGCCGTTCTTGAGTATCTCGCCGCTGAGGTACCTGCTGAACTCTATTTGCTCTCTTAGATCTGTGTTTCTTTCTATTTGATGTGGATGAGTTCTTCATAACTGCTAGTTAGGGATTTGAGTTTAATTCTGGAACTAGATTCTTATCTCTTCGATTGGATGTTACTACTTTGAATTTTGCTATACTATTAGGCCTGTTTTATTCCAGGGGAATAAATTCAGAAATTCTAAGGGCTGATGAATTTCAAGCTCATGATCTCATGAATTTGAGCTTCGATTGTCTAATTTAGCTTTCCGATACGTGACTATTGTAATCTGGAACTCAATTATTGTTTGGATTGCTGAATTCAGTCGTTCGATTGACTGCGCATGATCGAAACTTAGGGTTTATAATCTAAAATTTCCGGTACAAATCTGTTTTCCTCTGGATAATCGTCTACGGATTGCATGTTCTTAGTCTCTAATCTGTCACAAACGGGGGTAAATTAGGTGCTGGAGTTGGCTGGAAATGCAGCCCGGGACAACAAAAAGAACAGGATAATTCCAAGGCATGTATTGTTGGCCATAAGGAACGATGAGGAACTTGGGAAATTGCTTGCTGGTGTAACGATTGCTCATGGAGGTGTTCTTCCAAACATAAACCCTGTTCTGTTGCCAAAGAAAAGCGAGAAAGCAGCTAGTAAAGAACCGAAATCTCCATCAAAGACCCCCAAGGGAGCAAAATCCCCAAAGAAGGCCTAGGTTTTTTCTTTCTAATCTGAAAACTTGACTGTTCTTTGCCCATTTGTATGTACTTTGTTGGCCTTTTAGGATCATCTTCTGTGTTGTTTATCAATGTAAGCTTAAAACTGAAGAATTGGGAGAGACTCTATCACTCCCACCATCGTAATGAATCAAACTCTGTACTGGTTATGATTGTTTAGCCATCAATTCTTCTCTTCCTTTTGTTCATCTTAAATGGATAAGGTTGAAAGAACAGAAATACCTAATGGACTGAGGTCCCAAATTCGAACCTTGATGCTAGTGATCCATTATTTCTTTCCGGCTCAAATTTTCATAGAATAGCTAAGAAATTAGTGTGCCAACCTTGAACCAGACAG

mRNA sequence

ATATAATTCTTCCCGCAAAACCAACTTCTCATTGTTATATCCACTGGCCTAATTTCATTTTCCTCTAATTCCTTCAAGTTCCTCTGATTTCCGGCGATCAGGTCAGGTTTCGATGGACGCAAGCGGCAAGTTGAAGAAGGGAGCTGGTGGCAGAAAGGGCGGTGGCCCGAAGAAGAAGCCTGTTTCTCGCTCTGTTAAGGCCGGCCTCCAGTTTCCCGTCGGTAGAATTGGCAGATATTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACTGGAGCTCCGGTCTACATGGCCGCCGTTCTTGAGTATCTCGCCGCTGAGGTGCTGGAGTTGGCTGGAAATGCAGCCCGGGACAACAAAAAGAACAGGATAATTCCAAGGCATGTATTGTTGGCCATAAGGAACGATGAGGAACTTGGGAAATTGCTTGCTGGTGTAACGATTGCTCATGGAGGTGTTCTTCCAAACATAAACCCTGTTCTGTTGCCAAAGAAAAGCGAGAAAGCAGCTAGTAAAGAACCGAAATCTCCATCAAAGACCCCCAAGGGAGCAAAATCCCCAAAGAAGGCCTAGGTTTTTTCTTTCTAATCTGAAAACTTGACTGTTCTTTGCCCATTTGTATGTACTTTGTTGGCCTTTTAGGATCATCTTCTGTGTTGTTTATCAATGTAAGCTTAAAACTGAAGAATTGGGAGAGACTCTATCACTCCCACCATCGTAATGAATCAAACTCTGTACTGGTTATGATTGTTTAGCCATCAATTCTTCTCTTCCTTTTGTTCATCTTAAATGGATAAGGTTGAAAGAACAGAAATACCTAATGGACTGAGGTCCCAAATTCGAACCTTGATGCTAGTGATCCATTATTTCTTTCCGGCTCAAATTTTCATAGAATAGCTAAGAAATTAGTGTGCCAACCTTGAACCAGACAG

Coding sequence (CDS)

ATGGACGCAAGCGGCAAGTTGAAGAAGGGAGCTGGTGGCAGAAAGGGCGGTGGCCCGAAGAAGAAGCCTGTTTCTCGCTCTGTTAAGGCCGGCCTCCAGTTTCCCGTCGGTAGAATTGGCAGATATTTGAAGAATGGCCGGTATGCTCGACGTGTCGGTACTGGAGCTCCGGTCTACATGGCCGCCGTTCTTGAGTATCTCGCCGCTGAGGTGCTGGAGTTGGCTGGAAATGCAGCCCGGGACAACAAAAAGAACAGGATAATTCCAAGGCATGTATTGTTGGCCATAAGGAACGATGAGGAACTTGGGAAATTGCTTGCTGGTGTAACGATTGCTCATGGAGGTGTTCTTCCAAACATAAACCCTGTTCTGTTGCCAAAGAAAAGCGAGAAAGCAGCTAGTAAAGAACCGAAATCTCCATCAAAGACCCCCAAGGGAGCAAAATCCCCAAAGAAGGCCTAG

Protein sequence

MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYMAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAASKEPKSPSKTPKGAKSPKKA
Homology
[Close]
BLAST of Carg12336 vs. NCBI nr
Match: XP_022997818.1 (histone H2A-like [Cucurbita maxima] >XP_023523186.1 histone H2A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.9 bits (707), Expect = 4.0e-71
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM
Sbjct: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA
Sbjct: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 153

[Close]
BLAST of Carg12336 vs. NCBI nr
Match: XP_022949405.1 (histone H2A-like [Cucurbita moschata])

HSP 1 Score: 273.1 bits (697), Expect = 5.8e-70
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MD S KLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM
Sbjct: 1   MDTSSKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA
Sbjct: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 153

[Close]
BLAST of Carg12336 vs. NCBI nr
Match: XP_004149043.1 (PREDICTED: histone H2A [Cucumis sativus] >XP_008457544.1 PREDICTED: histone H2A [Cucumis melo] >KGN65668.1 hypothetical protein Csa_1G481210 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 3.3e-65
Identity = 142/153 (92.81%), Postives = 145/153 (94.77%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           M+  GKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY+
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKKSEKA +KEP XXXXXXX    PKKA
Sbjct: 121 NPVLLPKKSEKATTKEPXXXXXXXXXXXXPKKA 153

[Close]
BLAST of Carg12336 vs. NCBI nr
Match: XP_012064992.1 (histone H2A [Jatropha curcas] >XP_012064993.1 histone H2A [Jatropha curcas] >KDP44203.1 hypothetical protein JCGZ_05670 [Jatropha curcas])

HSP 1 Score: 256.5 bits (654), Expect = 5.6e-65
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MDA  K+KKGAGGRKGGGPKKKP SRSVKAGLQFPVGRIGRYLK GRYA+RVG+GAPVY+
Sbjct: 1   MDAGAKVKKGAGGRKGGGPKKKPTSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKKSEKAA+KEPK       G KSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPK---SPSKGTKSPKKA 150

[Close]
BLAST of Carg12336 vs. NCBI nr
Match: XP_023877105.1 (histone H2A [Quercus suber] >XP_023919571.1 histone H2A [Quercus suber] >POE80280.1 histone h2a [Quercus suber] >POF01533.1 histone h2a [Quercus suber])

HSP 1 Score: 255.8 bits (652), Expect = 9.6e-65
Identity = 134/153 (87.58%), Postives = 141/153 (92.16%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MD  GK+K+GAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYA+RVGTGAPVY+
Sbjct: 1   MDTGGKVKRGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKK+EKAA+KEPK         KSPKKA
Sbjct: 121 NPVLLPKKTEKAATKEPK---SPARATKSPKKA 150

[Close]
BLAST of Carg12336 vs. TAIR10
Match: AT5G02560.2 (histone H2A 12)

HSP 1 Score: 218.4 bits (555), Expect = 3.1e-57
Identity = 119/159 (74.84%), Postives = 128/159 (80.50%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           MD+  K+KKGA GR+ GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  MAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           +AAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAAS 135
           +RNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAAS
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAAS 159

[Close]
BLAST of Carg12336 vs. TAIR10
Match: AT5G59870.1 (histone H2A 6)

HSP 1 Score: 206.8 bits (525), Expect = 9.2e-54
Identity = 117/159 (73.58%), Postives = 131/159 (82.39%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           M+++GK+KK  GGRK  G PK K VS+S+KAGLQFPVGRI R+LK GRYA+R+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  MAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           MAAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKS-----EKAASKEPKXXXXXXXGAKSPKKA 154
           IN VLLPKKS     E+ A+K P          KSPKKA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSP---------VKSPKKA 150

[Close]
BLAST of Carg12336 vs. TAIR10
Match: AT5G27670.1 (histone H2A 7)

HSP 1 Score: 200.3 bits (508), Expect = 8.7e-52
Identity = 113/151 (74.83%), Postives = 124/151 (82.12%), Query Frame = 0 

Query: 3   ASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYMAA 62
           A+ K  +GAGGRK GG +KK VS+SVKAGLQFPVGRI RYLK GRYA R G+GAPVY+AA
Sbjct: 6   ATTKPTRGAGGRK-GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAA 65

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIA GGVLPNINP
Sbjct: 66  VLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINP 125

Query: 123 VLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           VLLPKKS  ++S+  K         KSPKKA
Sbjct: 126 VLLPKKSTASSSQAEK-----ASATKSPKKA 150

[Close]
BLAST of Carg12336 vs. TAIR10
Match: AT3G20670.1 (histone H2A 13)

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-44
Identity = 90/120 (75.00%), Postives = 101/120 (84.17%), Query Frame = 0 

Query: 10  GAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYMAAVLEYLAA 69
           G G   G G  KK  SRS KAGLQFPVGRI R+LKNG+YA RVG GAPVY+AAVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 129
           EVLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

[Close]
BLAST of Carg12336 vs. TAIR10
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 173.7 bits (439), Expect = 8.7e-44
Identity = 92/128 (71.88%), Postives = 104/128 (81.25%), Query Frame = 0 

Query: 10  GAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYMAAVLEYLAA 69
           G G + G G  KK  SRS KAGLQFPVGRI R+LK G+YA RVG GAPVY+AAVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 129
           EVLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPK  
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK-- 122

Query: 130 EKAASKEP 138
            KA S +P
Sbjct: 123 -KAGSSKP 127

[Close]
BLAST of Carg12336 vs. Swiss-Prot
Match: sp|Q2HU65|H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.1e-63
Identity = 129/155 (83.23%), Postives = 139/155 (89.68%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MDAS K KKGAGGRKGGGP+KK V+RS++AGLQFPVGRIGRYLK GRYA+RVGTGAPVY+
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKA--ASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKK+E++   SKEPK         KSPKKA
Sbjct: 121 NPVLLPKKTERSNTVSKEPK--SPKPKAGKSPKKA 153

[Close]
BLAST of Carg12336 vs. Swiss-Prot
Match: sp|Q9M531|H2A_EUPES (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-62
Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MD   KLKKGAG RKGGGPKKKPVSRSVKAGLQFPVGRIGR+LK GRYA+RVG+GAPVY+
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAAS 135
           NPVLLPKK+EKAA+
Sbjct: 121 NPVLLPKKAEKAAA 134

[Close]
BLAST of Carg12336 vs. Swiss-Prot
Match: sp|Q1S053|H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.7e-61
Identity = 127/156 (81.41%), Postives = 138/156 (88.46%), Query Frame = 0 

Query: 1   MDASGK-LKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY 60
           MDAS K  KKGAGGRKGGGP+KK V+RS++AGLQFPVGRIGRYLK GRYA+RVGTGAPVY
Sbjct: 1   MDASTKTTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  MAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKKNRIIPRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKA--ASKEPKXXXXXXXGAKSPKKA 154
           INP+LLPKK+E+A    KEPK         KSPKKA
Sbjct: 121 INPILLPKKTERANTGGKEPK----TTKAGKSPKKA 152

[Close]
BLAST of Carg12336 vs. Swiss-Prot
Match: sp|P25470|H2A1_PEA (Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-60
Identity = 123/153 (80.39%), Postives = 135/153 (88.24%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MDAS K KKGAGGRKGGGP+KK V+RSV+AGLQFPVGR+GR+LK GRYA+RVGTGAPVY+
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRI PRH+LLA+RNDEELGKLLAGVTIA+GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPK+ E AA+  PK         KSPKKA
Sbjct: 121 NPVLLPKRKENAAASTPK---SPSKAKKSPKKA 150

[Close]
BLAST of Carg12336 vs. Swiss-Prot
Match: sp|Q2HU68|H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-60
Identity = 127/155 (81.94%), Postives = 136/155 (87.74%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MDAS K KKGAGGRK GGP+KK V+RS +AGLQFPVGRIGRYLK GRYA+RVGTGAPVY+
Sbjct: 1   MDASTKTKKGAGGRK-GGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAA--SKEPKXXXXXXXGAKSPKKA 154
           NP+LLPKK+EKAA  +K P          KSPKKA
Sbjct: 121 NPILLPKKNEKAATTTKSPS------KATKSPKKA 148

[Close]
BLAST of Carg12336 vs. TrEMBL
Match: tr|A0A1S3C5R1|A0A1S3C5R1_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103497210 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.2e-65
Identity = 142/153 (92.81%), Postives = 145/153 (94.77%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           M+  GKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY+
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKKSEKA +KEP XXXXXXX    PKKA
Sbjct: 121 NPVLLPKKSEKATTKEPXXXXXXXXXXXXPKKA 153

[Close]
BLAST of Carg12336 vs. TrEMBL
Match: tr|A0A0A0LV77|A0A0A0LV77_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G481210 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.2e-65
Identity = 142/153 (92.81%), Postives = 145/153 (94.77%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           M+  GKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVY+
Sbjct: 1   METGGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKKSEKA +KEP XXXXXXX    PKKA
Sbjct: 121 NPVLLPKKSEKATTKEPXXXXXXXXXXXXPKKA 153

[Close]
BLAST of Carg12336 vs. TrEMBL
Match: tr|A0A067LAJ2|A0A067LAJ2_JATCU (Histone H2A OS=Jatropha curcas OX=180498 GN=JCGZ_05670 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.7e-65
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MDA  K+KKGAGGRKGGGPKKKP SRSVKAGLQFPVGRIGRYLK GRYA+RVG+GAPVY+
Sbjct: 1   MDAGAKVKKGAGGRKGGGPKKKPTSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKKSEKAA+KEPK       G KSPKKA
Sbjct: 121 NPVLLPKKSEKAATKEPK---SPSKGTKSPKKA 150

[Close]
BLAST of Carg12336 vs. TrEMBL
Match: tr|A0A2P4JHM5|A0A2P4JHM5_QUESU (Histone H2A OS=Quercus suber OX=58331 GN=CFP56_14047 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 6.3e-65
Identity = 134/153 (87.58%), Postives = 141/153 (92.16%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           MD  GK+K+GAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYA+RVGTGAPVY+
Sbjct: 1   MDTGGKVKRGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKK+EKAA+KEPK         KSPKKA
Sbjct: 121 NPVLLPKKTEKAATKEPK---SPARATKSPKKA 150

[Close]
BLAST of Carg12336 vs. TrEMBL
Match: tr|A0A1U8LZK4|A0A1U8LZK4_GOSHI (Histone H2A OS=Gossypium hirsutum OX=3635 GN=LOC107932491 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 8.3e-65
Identity = 134/153 (87.58%), Postives = 141/153 (92.16%), Query Frame = 0 

Query: 1   MDASGKLKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYARRVGTGAPVYM 60
           M+ SGK+KKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRY++RVGTGAPVY+
Sbjct: 1   METSGKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSEKAASKEPKXXXXXXXGAKSPKKA 154
           NPVLLPKK+EKAA KEPK         KSPKKA
Sbjct: 121 NPVLLPKKTEKAAGKEPK---SPSKATKSPKKA 150

The following BLAST results are available for this feature:
BLAST of Carg12336 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022997818.14.0e-71100.00histone H2A-like [Cucurbita maxima] >XP_023523186.1 histone H2A-like [Cucurbita ... [more]
XP_022949405.15.8e-7098.69histone H2A-like [Cucurbita moschata][more]
XP_004149043.13.3e-6592.81PREDICTED: histone H2A [Cucumis sativus] >XP_008457544.1 PREDICTED: histone H2A ... [more]
XP_012064992.15.6e-6588.24histone H2A [Jatropha curcas] >XP_012064993.1 histone H2A [Jatropha curcas] >KDP... [more]
XP_023877105.19.6e-6587.58histone H2A [Quercus suber] >XP_023919571.1 histone H2A [Quercus suber] >POE8028... [more]
BLAST of Carg12336 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02560.23.1e-5774.84histone H2A 12[more]
AT5G59870.19.2e-5473.58histone H2A 6[more]
AT5G27670.18.7e-5274.83histone H2A 7[more]
AT3G20670.11.7e-4475.00histone H2A 13[more]
AT4G27230.18.7e-4471.88histone H2A 2[more]
BLAST of Carg12336 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q2HU65|H2A2_MEDTR6.1e-6383.23Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P... [more]
sp|Q9M531|H2A_EUPES2.3e-6291.04Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1[more]
sp|Q1S053|H2A3_MEDTR5.7e-6181.41Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1[more]
sp|P25470|H2A1_PEA1.3e-6080.39Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1[more]
sp|Q2HU68|H2A1_MEDTR3.7e-6081.94Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P... [more]
BLAST of Carg12336 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C5R1|A0A1S3C5R1_CUCME2.2e-6592.81Histone H2A OS=Cucumis melo OX=3656 GN=LOC103497210 PE=3 SV=1[more]
tr|A0A0A0LV77|A0A0A0LV77_CUCSA2.2e-6592.81Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G481210 PE=3 SV=1[more]
tr|A0A067LAJ2|A0A067LAJ2_JATCU3.7e-6588.24Histone H2A OS=Jatropha curcas OX=180498 GN=JCGZ_05670 PE=3 SV=1[more]
tr|A0A2P4JHM5|A0A2P4JHM5_QUESU6.3e-6587.58Histone H2A OS=Quercus suber OX=58331 GN=CFP56_14047 PE=3 SV=1[more]
tr|A0A1U8LZK4|A0A1U8LZK4_GOSHI8.3e-6587.58Histone H2A OS=Gossypium hirsutum OX=3635 GN=LOC107932491 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR032458Histone_H2A_CS
IPR032454Histone_H2A_C
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
IPR002119Histone_H2A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12336-RACarg12336-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 80..94
score: 73.78
coord: 66..79
score: 89.46
coord: 51..66
score: 82.86
coord: 108..126
score: 75.79
coord: 22..44
score: 69.23
IPR002119Histone H2ASMARTSM00414h2a4coord: 11..131
e-value: 3.8E-80
score: 282.2
IPR002119Histone H2ACDDcd00074H2Acoord: 23..128
e-value: 1.77523E-64
score: 194.476
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 10..137
e-value: 1.8E-62
score: 210.9
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 13..134
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 20..97
e-value: 5.6E-12
score: 46.0
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 100..133
e-value: 4.1E-19
score: 67.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..153
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 3..152
NoneNo IPR availablePANTHERPTHR23430:SF125SUBFAMILY NOT NAMEDcoord: 3..152
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 30..36

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12336Cla008284Watermelon (97103) v1carwmB0440
Carg12336Cla013285Watermelon (97103) v1carwmB0442
Carg12336Csa1G481210Cucumber (Chinese Long) v2carcuB0471
Carg12336Csa6G303770Cucumber (Chinese Long) v2carcuB0476
Carg12336MELO3C020706Melon (DHL92) v3.5.1carmeB0449
Carg12336MELO3C013682Melon (DHL92) v3.5.1carmeB0448
Carg12336ClCG02G020390Watermelon (Charleston Gray)carwcgB0433
Carg12336ClCG03G001930Watermelon (Charleston Gray)carwcgB0436
Carg12336CSPI01G22460Wild cucumber (PI 183967)carcpiB0476
Carg12336Cucsa.213450Cucumber (Gy14) v1carcgyB0512
Carg12336CmaCh01G005640Cucurbita maxima (Rimu)carcmaB0613
Carg12336CmaCh13G001570Cucurbita maxima (Rimu)carcmaB0610
Carg12336CmaCh02G008250Cucurbita maxima (Rimu)carcmaB0616
Carg12336CmoCh13G001610Cucurbita moschata (Rifu)carcmoB0594
Carg12336CmoCh02G008290Cucurbita moschata (Rifu)carcmoB0599
Carg12336CmoCh01G005910Cucurbita moschata (Rifu)carcmoB0596
Carg12336Lsi02G013960Bottle gourd (USVL1VR-Ls)carlsiB403
Carg12336Lsi10G013530Bottle gourd (USVL1VR-Ls)carlsiB401
Carg12336Cp4.1LG20g08780Cucurbita pepo (Zucchini)carcpeB0620
Carg12336Cp4.1LG05g08970Cucurbita pepo (Zucchini)carcpeB0625
Carg12336Cp4.1LG02g13170Cucurbita pepo (Zucchini)carcpeB0622
Carg12336CsGy6G016360Cucumber (Gy14) v2carcgybB0454
Carg12336MELO3C020706.2Melon (DHL92) v3.6.1carmedB0451
Carg12336MELO3C013682.2Melon (DHL92) v3.6.1carmedB0450
Carg12336CsaV3_6G022220Cucumber (Chinese Long) v3carcucB0478
Carg12336CsaV3_1G033640Cucumber (Chinese Long) v3carcucB0472
Carg12336Cla97C02G046350Watermelon (97103) v2carwmbB0464
Carg12336Cla97C03G052950Watermelon (97103) v2carwmbB0467
Carg12336Bhi10G000543Wax gourdcarwgoB0530
Carg12336Bhi08G000330Wax gourdcarwgoB0533
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12336Carg20278Silver-seed gourdcarcarB333
Carg12336Carg03297Silver-seed gourdcarcarB354
Carg12336Carg21033Silver-seed gourdcarcarB447
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12336Silver-seed gourdcarcarB332
Carg12336Silver-seed gourdcarcarB353
Carg12336Cucumber (Gy14) v2carcgybB0448
Carg12336Cucurbita maxima (Rimu)carcmaB0614
Carg12336Cucurbita maxima (Rimu)carcmaB0615
Carg12336Cucurbita moschata (Rifu)carcmoB0597
Carg12336Cucurbita moschata (Rifu)carcmoB0598
Carg12336Cucurbita pepo (Zucchini)carcpeB0617
Carg12336Cucurbita pepo (Zucchini)carcpeB0618
Carg12336Cucurbita pepo (Zucchini)carcpeB0624
Carg12336Wild cucumber (PI 183967)carcpiB0480
Carg12336Melon (DHL92) v3.5.1carmeB0446
Carg12336Bottle gourd (USVL1VR-Ls)carlsiB400
Carg12336Melon (DHL92) v3.5.1carmeB0447
Carg12336Melon (DHL92) v3.6.1carmedB0448
Carg12336Watermelon (Charleston Gray)carwcgB0435
Carg12336Watermelon (97103) v1carwmB0444
Carg12336Wax gourdcarwgoB0529