CmoCh12G013560 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G013560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Dense and erect pancile 1
Location	Cmo_Chr12 : 11683943 .. 11684775 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCAATGCTGCAAAGAGTACGTACACCAGTTCATTTGCCAAAGACTTTGAACTTCTACTTCCCAGATCTTCTGCTCATCTAGCACAAGAACACTTTGCAGGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACGCAAGGGGTTCCCCATCATTAATTTTCTAAAATTCTTTGCAGTCTATTCATGCTATATGTTTCTTCTTTGAATCAGATATAAGAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGGTATGTAACTCTCACCTTACTTTTTCTTCCATGATGATGTGGTGTAAGAATAATCAGGCTAATTCTCACTTGATGCAGTGGGTTCCCCTGCTGTACGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCGAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCAGCTGCTGTAACTTACCACAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGTAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCATTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA

mRNA sequence

ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCAATGCTGCAAAGAGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACGCAAGGGTCTATTCATGCTATATGTTTCTTCTTTGAATCAGATATAAGAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGTGGGTTCCCCTGCTGTACGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCGAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCAGCTGCTGTAACTTACCACAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGTAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCATTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA

Coding sequence (CDS)

ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCAATGCTGCAAAGAGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACGCAAGGGTCTATTCATGCTATATGTTTCTTCTTTGAATCAGATATAAGAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGTGGGTTCCCCTGCTGTACGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCGAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCAGCTGCTGTAACTTACCACAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGTAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCATTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA

Homology

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BLAST of CmoCh12G013560 vs. TrEMBL
Match: B9RR96_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711500 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.5e-13
Identity = 65/171 (38.01%), Postives = 91/171 (53.22%), Query Frame = 1


Query: 5   QEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAI--CFFFESDIRSIAADVNF 64
           +E+LKS  GLQPA++CCKEV+D+VVA SDPLI T+G+I  I    FF ++I      V+ 
Sbjct: 53  EEELKSVQGLQPATRCCKEVSDFVVANSDPLIPTKGTIRLIFLFIFFLAEIGRTEGLVDS 112

Query: 65  GNGSVGSPAVRCRGFAVAAMLDARSISKTHPAVAVIIHVNAYHAAAVT---YHSGSV--- 124
           G+G V  PA+   G  VAA+ DA  +   H AV+V + V    AA V+   + S +V   
Sbjct: 113 GSGFVEYPALISHGSVVAAIRDAALVQSCHGAVSVTVTVTYATAAPVSAAQHPSANVALG 172

Query: 125 -------ALVQHYPDAHALAQSFHVANVTIFHYLHALNAHAVNANAAVAVL 161
                  ALVQH P A  +          +  +L A  A   N  A +A++
Sbjct: 173 VAPAPALALVQH-PIAVGVESPHAAVTAALVDFLRAQIALVANLRAQIALV 222

[Close]

BLAST of CmoCh12G013560 vs. TrEMBL
Match: A0A0R0G2W0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G178100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 1   MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFESDI 54
           +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C  ++ DI
Sbjct: 48  ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHQSCSLWKCDI 100

[Close]

BLAST of CmoCh12G013560 vs. TrEMBL
Match: A0A0R0IC95_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G070100 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 47 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 96

[Close]

BLAST of CmoCh12G013560 vs. TrEMBL
Match: A0A0B2PX76_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026176 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 11 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 60

[Close]

BLAST of CmoCh12G013560 vs. TrEMBL
Match: K7LC96_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G070100 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 47 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 96

[Close]

BLAST of CmoCh12G013560 vs. NCBI nr
Match: gi|223544751|gb|EEF46267.1| (hypothetical protein RCOM_0711500 [Ricinus communis])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 65/171 (38.01%), Postives = 91/171 (53.22%), Query Frame = 1


Query: 5   QEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAI--CFFFESDIRSIAADVNF 64
           +E+LKS  GLQPA++CCKEV+D+VVA SDPLI T+G+I  I    FF ++I      V+ 
Sbjct: 53  EEELKSVQGLQPATRCCKEVSDFVVANSDPLIPTKGTIRLIFLFIFFLAEIGRTEGLVDS 112

Query: 65  GNGSVGSPAVRCRGFAVAAMLDARSISKTHPAVAVIIHVNAYHAAAVT---YHSGSV--- 124
           G+G V  PA+   G  VAA+ DA  +   H AV+V + V    AA V+   + S +V   
Sbjct: 113 GSGFVEYPALISHGSVVAAIRDAALVQSCHGAVSVTVTVTYATAAPVSAAQHPSANVALG 172

Query: 125 -------ALVQHYPDAHALAQSFHVANVTIFHYLHALNAHAVNANAAVAVL 161
                  ALVQH P A  +          +  +L A  A   N  A +A++
Sbjct: 173 VAPAPALALVQH-PIAVGVESPHAAVTAALVDFLRAQIALVANLRAQIALV 222

[Close]

BLAST of CmoCh12G013560 vs. NCBI nr
Match: gi|571519607|ref|XP_006597873.1| (PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like isoform X2 [Glycine max])

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 1   MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFESDI 54
           +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C  ++ DI
Sbjct: 48  ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHQSCSLWKCDI 100

[Close]

BLAST of CmoCh12G013560 vs. NCBI nr
Match: gi|947088834|gb|KRH37499.1| (hypothetical protein GLYMA_09G070100 [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 47 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 96

[Close]

BLAST of CmoCh12G013560 vs. NCBI nr
Match: gi|734350111|gb|KHN12284.1| (hypothetical protein glysoja_026176 [Glycine soja])

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 11 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 60

[Close]

BLAST of CmoCh12G013560 vs. NCBI nr
Match: gi|356532778|ref|XP_003534947.1| (PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 47 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 96

The following BLAST results are available for this feature:

BLAST of CmoCh12G013560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G013560 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RR96_RICCO	5.5e-13	38.01	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711500 PE=4 SV=1	[more]
A0A0R0G2W0_SOYBN	2.0e-07	52.83	Uncharacterized protein OS=Glycine max GN=GLYMA_15G178100 PE=4 SV=1	[more]
A0A0R0IC95_SOYBN	4.5e-07	54.00	Uncharacterized protein OS=Glycine max GN=GLYMA_09G070100 PE=4 SV=1	[more]
A0A0B2PX76_GLYSO	4.5e-07	54.00	Uncharacterized protein OS=Glycine soja GN=glysoja_026176 PE=4 SV=1	[more]
K7LC96_SOYBN	4.5e-07	54.00	Uncharacterized protein OS=Glycine max GN=GLYMA_09G070100 PE=4 SV=1	[more]

BLAST of CmoCh12G013560 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G013560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223544751\|gb\|EEF46267.1\|	7.9e-13	38.01	hypothetical protein RCOM_0711500 [Ricinus communis]	[more]
gi\|571519607\|ref\|XP_006597873.1\|	2.9e-07	52.83	PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like isoform X2 [G...	[more]
gi\|947088834\|gb\|KRH37499.1\|	6.5e-07	54.00	hypothetical protein GLYMA_09G070100 [Glycine max]	[more]
gi\|734350111\|gb\|KHN12284.1\|	6.5e-07	54.00	hypothetical protein glysoja_026176 [Glycine soja]	[more]
gi\|356532778\|ref\|XP_003534947.1\|	6.5e-07	54.00	PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015898	G-protein_gamma-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004871	signal transducer activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005834	heterotrimeric G-protein complex

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0008150	biological_process
cellular_component	GO:0005834	heterotrimeric G-protein complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004871	signal transducer activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013560.1	CmoCh12G013560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015898	G-protein gamma-like domain	PFAM	PF00631	G-gamma	coord: 6..39 score: 3.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G013560	CmaCh12G013260	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G013560	CmaCh05G014290	Cucurbita maxima (Rimu)	cmacmoB763
CmoCh12G013560	Cla016865	Watermelon (97103) v1	cmowmB159
CmoCh12G013560	ClCG11G001400	Watermelon (Charleston Gray)	cmowcgB137
CmoCh12G013560	CSPI02G00110	Wild cucumber (PI 183967)	cmocpiB166
CmoCh12G013560	Lsi11G001540	Bottle gourd (USVL1VR-Ls)	cmolsiB150
CmoCh12G013560	Cp4.1LG11g12010	Cucurbita pepo (Zucchini)	cmocpeB147
CmoCh12G013560	MELO3C004657.2	Melon (DHL92) v3.6.1	cmomedB177
CmoCh12G013560	CsaV3_2G001120	Cucumber (Chinese Long) v3	cmocucB0192
CmoCh12G013560	Cla97C11G207780	Watermelon (97103) v2	cmowmbB159
CmoCh12G013560	Bhi06G001376	Wax gourd	cmowgoB0188
CmoCh12G013560	CsGy2G000140	Cucumber (Gy14) v2	cgybcmoB178
CmoCh12G013560	Carg18648	Silver-seed gourd	carcmoB1207
CmoCh12G013560	Carg10773	Silver-seed gourd	carcmoB0776

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G013560	CmoCh05G014210	Cucurbita moschata (Rifu)	cmocmoB148

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G013560	Watermelon (Charleston Gray)	cmowcgB147
CmoCh12G013560	Watermelon (97103) v1	cmowmB142
CmoCh12G013560	Cucurbita pepo (Zucchini)	cmocpeB160
CmoCh12G013560	Cucurbita pepo (Zucchini)	cmocpeB170
CmoCh12G013560	Cucurbita pepo (Zucchini)	cmocpeB176
CmoCh12G013560	Melon (DHL92) v3.6.1	cmomedB180
CmoCh12G013560	Silver-seed gourd	carcmoB0130
CmoCh12G013560	Cucurbita moschata (Rifu)	cmocmoB080
CmoCh12G013560	Cucumber (Gy14) v1	cgycmoB0281
CmoCh12G013560	Cucurbita maxima (Rimu)	cmacmoB080
CmoCh12G013560	Cucurbita maxima (Rimu)	cmacmoB121
CmoCh12G013560	Melon (DHL92) v3.5.1	cmomeB161