Carg18648 (gene) Silver-seed gourd

Overview
NameCarg18648
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_147 : 342493 .. 343325 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCGATGCTGCAAAGAGTACGTACACCAGTTCATTTGCCAAAGACTTTGAACTTCTACTTCCCAGATCTTCTGCTCATCTAGCACAAGAACACTTTGCAGGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACGTAAGGGGTTCCCCATCATTAATTTTCTAAAATTCTTTGCAGTCTATTCATGCTATATGTTTCTTCTTTGAATCAGATATAAGAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGGTATGTAACTCTCACCTTACTTTTTCTTCCATGATGATGTGGTGTAAGAATAATCAGGCTAATTCTCACTTGAAGCAGTGGATTCCCCTGCTGTAAGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCAAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCGGCTGCTGTAACTTACCAAAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGCAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCGTTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA

mRNA sequence

ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCGATGCTGCAAAGAGTACATCTTCTGCTCATCTAGCACAAGAACACTTTGCAGGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGCAGTGGATTCCCCTGCTGTAAGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCAAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCGGCTGCTGTAACTTACCAAAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGCAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCGTTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA

Coding sequence (CDS)

ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCGATGCTGCAAAGAGTACATCTTCTGCTCATCTAGCACAAGAACACTTTGCAGGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGCAGTGGATTCCCCTGCTGTAAGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCAAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCGGCTGCTGTAACTTACCAAAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGCAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCGTTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA

Protein sequence

MSLGQEDLKSTDGLQPASRCCKEYIFCSSSTRTLCRVADYVVAKSDPLITTSIAADVNFGNGSAVDSPAVSCRGFAVAAMLDARSISKTHPAVAVIIHVNAYHAAAVTYQSGSVALVQHYPDAHALAQSFHAANVTIFHYLHALNAHAVNANAAVAVLETAAVIHATCVASQRPTPLLSPLVLAFFFSWQTRLTKFLGEPPSSNNKNVK
Homology
[Close]
BLAST of Carg18648 vs. NCBI nr
Match: RDY03491.1 (Guanine nucleotide-binding protein subunit gamma 3, partial [Mucuna pruriens])

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-06
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 0 

Query: 1   MSLGQEDLKSTDGLQPASRCCKEYIFCSSSTRTLCRVADYVVAKSDPLITTSIAADVNFG 60
           +S  +E+LKS++GLQPASRCCKE             +AD+V+A SDPL+           
Sbjct: 67  ISFLEEELKSSEGLQPASRCCKE-------------IADFVMANSDPLLPMCKK------ 126

Query: 61  NGSAVDSPAVSCRGFAVAAMLDARSISK-THPAVAVIIHVNAYHAAAVTY 110
           N  ++ SPA+SC G  V A++ A S +     AVAV+ H++   AA V Y
Sbjct: 127 NRRSLRSPALSCLGSGVGAVMVAVSTANHAIAAVAVVFHLSIALAALVEY 157

[Close]
BLAST of Carg18648 vs. NCBI nr
Match: RDX84672.1 (Guanine nucleotide-binding protein subunit gamma 3, partial [Mucuna pruriens])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 0 

Query: 5   QEDLKSTDGLQPASRCCKEYIFCSSSTRTLCRVADYVVAKSDPLITTSIAADVNFGNGSA 64
           +E+LKS +GLQPASRCCKE             +ADYV+A SDPL+  S AA V  G+GS 
Sbjct: 109 EEELKSVEGLQPASRCCKE-------------IADYVMANSDPLL-PSTAAHVASGSGS- 168

Query: 65  VDSPAVSCRGFAVAAMLDARSISKTHPAVAVIIHVNAYHAAAVTYQSG 113
           V  P ++  G A A       ++    AVAV+     +H +   YQSG
Sbjct: 169 VACPVLTSLGSAAA-------VTTAKVAVAVV-----FHPSIAPYQSG 189

[Close]
BLAST of Carg18648 vs. NCBI nr
Match: OIW19351.1 (hypothetical protein TanjilG_03485 [Lupinus angustifolius])

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-05
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 1  MSLGQEDLKSTDGLQPASRCCKEYIFCSSSTRTLCRVADYVVAKSDPLITTSIAADVNFG 60
          +S  +E+LKS +GLQPASRCCKE             +AD+V+A SDPL+ + IA  V FG
Sbjct: 44 ISFLEEELKSVEGLQPASRCCKE-------------MADFVIANSDPLLPSRIAGHVAFG 92

Query: 61 NG 63
          +G
Sbjct: 104 SG 92

[Close]
BLAST of Carg18648 vs. NCBI nr
Match: XP_022154659.1 (guanine nucleotide-binding protein subunit gamma 3-like [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-05
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 5  QEDLKSTDGLQPASRCCKEYIFCSSSTRTLCRVADYVVAKSDPLITT 52
          QE+LKST+GLQPASRCCKE             VADYVVAKSDPLI T
Sbjct: 28 QEELKSTEGLQPASRCCKE-------------VADYVVAKSDPLIPT 61

[Close]
BLAST of Carg18648 vs. NCBI nr
Match: EEF46267.1 (hypothetical protein RCOM_0711500 [Ricinus communis])

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-04
Identity = 40/108 (37.04%), Postives = 52/108 (48.15%), Query Frame = 0 

Query: 5   QEDLKSTDGLQPASRCCKEYIFCSSSTRTLCRVADYVVAKSDPLITTS-----------I 64
           +E+LKS  GLQPA+RCCKE             V+D+VVA SDPLI T             
Sbjct: 53  EEELKSVQGLQPATRCCKE-------------VSDFVVANSDPLIPTKGTIRLIFLFIFF 112

Query: 65  AADVNFGNG------SAVDSPAVSCRGFAVAAMLDARSISKTHPAVAV 96
            A++    G        V+ PA+   G  VAA+ DA  +   H AV+V
Sbjct: 113 LAEIGRTEGLVDSGSGFVEYPALISHGSVVAAIRDAALVQSCHGAVSV 147

[Close]
BLAST of Carg18648 vs. TrEMBL
Match: tr|A0A1J7J2D6|A0A1J7J2D6_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03485 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-05
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 1  MSLGQEDLKSTDGLQPASRCCKEYIFCSSSTRTLCRVADYVVAKSDPLITTSIAADVNFG 60
          +S  +E+LKS +GLQPASRCCKE             +AD+V+A SDPL+ + IA  V FG
Sbjct: 44 ISFLEEELKSVEGLQPASRCCKE-------------MADFVIANSDPLLPSRIAGHVAFG 92

Query: 61 NG 63
          +G
Sbjct: 104 SG 92

[Close]
BLAST of Carg18648 vs. TrEMBL
Match: tr|B9RR96|B9RR96_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0711500 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-04
Identity = 40/108 (37.04%), Postives = 52/108 (48.15%), Query Frame = 0 

Query: 5   QEDLKSTDGLQPASRCCKEYIFCSSSTRTLCRVADYVVAKSDPLITTS-----------I 64
           +E+LKS  GLQPA+RCCKE             V+D+VVA SDPLI T             
Sbjct: 53  EEELKSVQGLQPATRCCKE-------------VSDFVVANSDPLIPTKGTIRLIFLFIFF 112

Query: 65  AADVNFGNG------SAVDSPAVSCRGFAVAAMLDARSISKTHPAVAV 96
            A++    G        V+ PA+   G  VAA+ DA  +   H AV+V
Sbjct: 113 LAEIGRTEGLVDSGSGFVEYPALISHGSVVAAIRDAALVQSCHGAVSV 147

The following BLAST results are available for this feature:
BLAST of Carg18648 vs. NCBI nr
Match NameE-valueIdentityDescription
RDY03491.12.1e-0640.00Guanine nucleotide-binding protein subunit gamma 3, partial [Mucuna pruriens][more]
RDX84672.11.1e-0541.67Guanine nucleotide-binding protein subunit gamma 3, partial [Mucuna pruriens][more]
OIW19351.15.2e-0548.39hypothetical protein TanjilG_03485 [Lupinus angustifolius][more]
XP_022154659.16.8e-0565.96guanine nucleotide-binding protein subunit gamma 3-like [Momordica charantia][more]
EEF46267.15.8e-0437.04hypothetical protein RCOM_0711500 [Ricinus communis][more]
BLAST of Carg18648 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18648 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18648 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1J7J2D6|A0A1J7J2D6_LUPAN3.5e-0548.39Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03485 PE=4 S... [more]
tr|B9RR96|B9RR96_RICCO3.8e-0437.04Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0711500 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18648-RACarg18648-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18648Cla016865Watermelon (97103) v1carwmB0898
Carg18648ClCG11G001400Watermelon (Charleston Gray)carwcgB0874
Carg18648CSPI02G00110Wild cucumber (PI 183967)carcpiB0935
Carg18648CmaCh12G013260Cucurbita maxima (Rimu)carcmaB1236
Carg18648CmaCh05G014290Cucurbita maxima (Rimu)carcmaB1237
Carg18648CmoCh12G013560Cucurbita moschata (Rifu)carcmoB1207
Carg18648CmoCh05G014210Cucurbita moschata (Rifu)carcmoB1208
Carg18648Lsi11G001540Bottle gourd (USVL1VR-Ls)carlsiB816
Carg18648Cp4.1LG11g12010Cucurbita pepo (Zucchini)carcpeB1244
Carg18648CsGy2G000140Cucumber (Gy14) v2carcgybB0887
Carg18648MELO3C004657.2Melon (DHL92) v3.6.1carmedB0891
Carg18648Bhi06G001376Wax gourdcarwgoB1041
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18648Carg10773Silver-seed gourdcarcarB528
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18648Cucumber (Gy14) v1carcgyB1014
Carg18648Cucurbita maxima (Rimu)carcmaB1234
Carg18648Cucurbita maxima (Rimu)carcmaB1235
Carg18648Cucurbita moschata (Rifu)carcmoB1206
Carg18648Cucurbita pepo (Zucchini)carcpeB1246
Carg18648Cucurbita pepo (Zucchini)carcpeB1247
Carg18648Cucurbita pepo (Zucchini)carcpeB1248
Carg18648Bottle gourd (USVL1VR-Ls)carlsiB817
Carg18648Melon (DHL92) v3.5.1carmeB0883
Carg18648Watermelon (Charleston Gray)carwcgB0875
Carg18648Watermelon (97103) v1carwmB0897
Carg18648Watermelon (97103) v2carwmbB0937
Carg18648Wax gourdcarwgoB1043
Carg18648Silver-seed gourdcarcarB108