CmoCh12G013560.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G013560.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDense and erect pancile 1
LocationCmo_Chr12 : 11683943 .. 11684775 (-)
Sequence length636
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCAATGCTGCAAAGAGTACGTACACCAGTTCATTTGCCAAAGACTTTGAACTTCTACTTCCCAGATCTTCTGCTCATCTAGCACAAGAACACTTTGCAGGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACGCAAGGGGTTCCCCATCATTAATTTTCTAAAATTCTTTGCAGTCTATTCATGCTATATGTTTCTTCTTTGAATCAGATATAAGAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGGTATGTAACTCTCACCTTACTTTTTCTTCCATGATGATGTGGTGTAAGAATAATCAGGCTAATTCTCACTTGATGCAGTGGGTTCCCCTGCTGTACGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCGAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCAGCTGCTGTAACTTACCACAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGTAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCATTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA

mRNA sequence

ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCAATGCTGCAAAGAGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACGCAAGGGTCTATTCATGCTATATGTTTCTTCTTTGAATCAGATATAAGAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGTGGGTTCCCCTGCTGTACGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCGAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCAGCTGCTGTAACTTACCACAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGTAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCATTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA

Coding sequence (CDS)

ATGTCTCTGGGGCAGGAAGACTTGAAGTCTACCGATGGTCTTCAACCTGCATCTCAATGCTGCAAAGAGGTAGCTGACTATGTGGTCGCCAAATCAGATCCCTTGATAACAACGCAAGGGTCTATTCATGCTATATGTTTCTTCTTTGAATCAGATATAAGAAGCATAGCCGCAGATGTCAATTTTGGAAATGGCTCTGTGGGTTCCCCTGCTGTACGTTGTCGTGGATTTGCTGTTGCTGCTATGCTGGATGCTCGATCCATCTCGAAAACCCACCCTGCTGTAGCTGTAATAATCCATGTAAATGCCTATCATGCAGCTGCTGTAACTTACCACAGTGGAAGTGTTGCACTTGTCCAACACTACCCCGATGCTCATGCTCTTGCCCAATCATTTCATGTAGCCAATGTTACCATTTTTCATTACCTTCATGCCCTGAATGCCCATGCTGTGAATGCAAATGCTGCTGTGGCTGTACTGGAAACTGCTGCTGTAATCCATGCCACTTGTGTTGCTAGCCAGAGACCGACACCACTGCTCAGTCCCTTAGTTTTAGCTTTCTTCTTCAGTTGGCAGACTCATTTAACCAAATTTCTCGGGGAACCACCTTCGAGCAACAACAAGAATGTAAAATAA
Homology
[Close]
BLAST of CmoCh12G013560.1 vs. TrEMBL
Match: B9RR96_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711500 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.5e-13
Identity = 65/171 (38.01%), Postives = 91/171 (53.22%), Query Frame = 1 

Query: 5   QEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAI--CFFFESDIRSIAADVNF 64
           +E+LKS  GLQPA++CCKEV+D+VVA SDPLI T+G+I  I    FF ++I      V+ 
Sbjct: 53  EEELKSVQGLQPATRCCKEVSDFVVANSDPLIPTKGTIRLIFLFIFFLAEIGRTEGLVDS 112

Query: 65  GNGSVGSPAVRCRGFAVAAMLDARSISKTHPAVAVIIHVNAYHAAAVT---YHSGSV--- 124
           G+G V  PA+   G  VAA+ DA  +   H AV+V + V    AA V+   + S +V   
Sbjct: 113 GSGFVEYPALISHGSVVAAIRDAALVQSCHGAVSVTVTVTYATAAPVSAAQHPSANVALG 172

Query: 125 -------ALVQHYPDAHALAQSFHVANVTIFHYLHALNAHAVNANAAVAVL 161
                  ALVQH P A  +          +  +L A  A   N  A +A++
Sbjct: 173 VAPAPALALVQH-PIAVGVESPHAAVTAALVDFLRAQIALVANLRAQIALV 222

[Close]
BLAST of CmoCh12G013560.1 vs. TrEMBL
Match: A0A0R0G2W0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G178100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 1   MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFESDI 54
           +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C  ++ DI
Sbjct: 48  ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHQSCSLWKCDI 100

[Close]
BLAST of CmoCh12G013560.1 vs. TrEMBL
Match: A0A0R0IC95_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G070100 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 47 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 96

[Close]
BLAST of CmoCh12G013560.1 vs. TrEMBL
Match: A0A0B2PX76_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026176 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 11 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 60

[Close]
BLAST of CmoCh12G013560.1 vs. TrEMBL
Match: K7LC96_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G070100 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 47 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 96

[Close]
BLAST of CmoCh12G013560.1 vs. NCBI nr
Match: gi|223544751|gb|EEF46267.1| (hypothetical protein RCOM_0711500 [Ricinus communis])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 65/171 (38.01%), Postives = 91/171 (53.22%), Query Frame = 1 

Query: 5   QEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAI--CFFFESDIRSIAADVNF 64
           +E+LKS  GLQPA++CCKEV+D+VVA SDPLI T+G+I  I    FF ++I      V+ 
Sbjct: 53  EEELKSVQGLQPATRCCKEVSDFVVANSDPLIPTKGTIRLIFLFIFFLAEIGRTEGLVDS 112

Query: 65  GNGSVGSPAVRCRGFAVAAMLDARSISKTHPAVAVIIHVNAYHAAAVT---YHSGSV--- 124
           G+G V  PA+   G  VAA+ DA  +   H AV+V + V    AA V+   + S +V   
Sbjct: 113 GSGFVEYPALISHGSVVAAIRDAALVQSCHGAVSVTVTVTYATAAPVSAAQHPSANVALG 172

Query: 125 -------ALVQHYPDAHALAQSFHVANVTIFHYLHALNAHAVNANAAVAVL 161
                  ALVQH P A  +          +  +L A  A   N  A +A++
Sbjct: 173 VAPAPALALVQH-PIAVGVESPHAAVTAALVDFLRAQIALVANLRAQIALV 222

[Close]
BLAST of CmoCh12G013560.1 vs. NCBI nr
Match: gi|571519607|ref|XP_006597873.1| (PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like isoform X2 [Glycine max])

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 1   MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFESDI 54
           +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C  ++ DI
Sbjct: 48  ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHQSCSLWKCDI 100

[Close]
BLAST of CmoCh12G013560.1 vs. NCBI nr
Match: gi|947088834|gb|KRH37499.1| (hypothetical protein GLYMA_09G070100 [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 47 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 96

[Close]
BLAST of CmoCh12G013560.1 vs. NCBI nr
Match: gi|734350111|gb|KHN12284.1| (hypothetical protein glysoja_026176 [Glycine soja])

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 11 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 60

[Close]
BLAST of CmoCh12G013560.1 vs. NCBI nr
Match: gi|356532778|ref|XP_003534947.1| (PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1  MSLGQEDLKSTDGLQPASQCCKEVADYVVAKSDPLITTQGSIHAICFFFE 51
          +S  +E+LKS++GLQPAS+CCKE+AD+V+A SDPL+ T    H  C F++
Sbjct: 47 ISFLEEELKSSEGLQPASRCCKEIADFVMANSDPLLPTSKKNHRSCSFWK 96

The following BLAST results are available for this feature:
BLAST of CmoCh12G013560.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G013560.1 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RR96_RICCO5.5e-1338.01Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711500 PE=4 SV=1[more]
A0A0R0G2W0_SOYBN2.0e-0752.83Uncharacterized protein OS=Glycine max GN=GLYMA_15G178100 PE=4 SV=1[more]
A0A0R0IC95_SOYBN4.5e-0754.00Uncharacterized protein OS=Glycine max GN=GLYMA_09G070100 PE=4 SV=1[more]
A0A0B2PX76_GLYSO4.5e-0754.00Uncharacterized protein OS=Glycine soja GN=glysoja_026176 PE=4 SV=1[more]
K7LC96_SOYBN4.5e-0754.00Uncharacterized protein OS=Glycine max GN=GLYMA_09G070100 PE=4 SV=1[more]
BLAST of CmoCh12G013560.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G013560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223544751|gb|EEF46267.1|7.9e-1338.01hypothetical protein RCOM_0711500 [Ricinus communis][more]
gi|571519607|ref|XP_006597873.1|2.9e-0752.83PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like isoform X2 [G... [more]
gi|947088834|gb|KRH37499.1|6.5e-0754.00hypothetical protein GLYMA_09G070100 [Glycine max][more]
gi|734350111|gb|KHN12284.1|6.5e-0754.00hypothetical protein glysoja_026176 [Glycine soja][more]
gi|356532778|ref|XP_003534947.1|6.5e-0754.00PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Glycine max][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR015898G-protein_gamma-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004871signal transducer activity
Vocabulary: Cellular Component
TermDefinition
GO:0005834heterotrimeric G-protein complex
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0005834 heterotrimeric G-protein complex
molecular_function GO:0004871 signal transducer activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh12G013560CmoCh12G013560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh12G013560.1CmoCh12G013560.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G013560.1.CDS.4CmoCh12G013560.1.CDS.4CDS
CmoCh12G013560.1.CDS.3CmoCh12G013560.1.CDS.3CDS
CmoCh12G013560.1.CDS.2CmoCh12G013560.1.CDS.2CDS
CmoCh12G013560.1.CDS.1CmoCh12G013560.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G013560.1.exon.4CmoCh12G013560.1.exon.4exon
CmoCh12G013560.1.exon.3CmoCh12G013560.1.exon.3exon
CmoCh12G013560.1.exon.2CmoCh12G013560.1.exon.2exon
CmoCh12G013560.1.exon.1CmoCh12G013560.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015898G-protein gamma-like domainPFAMPF00631G-gammacoord: 6..39
score: 3.