CmoCh12G008890 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G008890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	AUX/IAA transcription factor
Location	Cmo_Chr12 : 8142573 .. 8144277 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTCTCAAAATCTAAACCCATGAACACCTTCCACTCTCACACACAATCCCCAGCCGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTTCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTATGAGAGCCTTGCTAAGGCCCTCAGAAGGATGTTCGTTGACGACGATGACGGTGGCTGCGGCGGCGGTGGCGGTGGCGAACCCTCCTGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTCCTTGCCGGTGATCTCAATTGGAAGTCGGTACTCTCAATTTCTTTGAATTTATTTATTTATTTATTATTTAAGAAAAAATGGGATTTTTAGAATTAAAATTTTATATAATACATTAACAAATTTTAATTTGTTCTTGATGGAATTTTATTTTAAAAAATTCTAAATTTTAACAAATTTGCTCTATTTATAGATGTGCTTTAAATTAGGGTAATCTAAGGAATTATTTGATAAAGGATTTAATTTTTATTTTGATAAACTCTTTGTTATAAAATTTCTTAATTCTTTTAGATTATTATTGAAATTTAGATTTTAAAATACGTATAAAAACTAATAGAAACTACTCGATATTCGAATTTTCACCTATATTATTCAAAATCTCTAATAACCCATTTATAAGAGTGTTTACCCTCCCTAACAAACGTGTTTTAAAGCCTTGAGGGGAAGCCGAGATAGAACAATATCGGTTAGCTATGGGTCTAGGTCGTTACAAATGATATCAGAGTAGTGAGGAGGCGATTCCCCAAAGGGGTAGACACGTAGACTTGAGGCGGTGTGCCAGTAAGGACGCTGGCGGGGTGTATTTGGTGGGGGTCCCACATTGATTGGAGAAAAGAACGACCCTGACACTGAAGGGGGTGGATTGTGATGTCCCACATTAGTTGGGGACTCAGCGAGCTTTGGAGGGGGTGGATTGTGATGTCTCATATTAGTTGGGGACTCGCTGAGCTCTGAAGGGGTGGATTGTGATGTCCCACGTTGGTTGGGGACTCACTGAGCTCTGAAGGGGGTGGATTGTGACCTCCACGTTGGTTGGTGGGGAGGAGAACAAAACACCCTTACAAGTGTGTGGAAACCTCCCCTAGCGGACCCTTTCCTAGAAAGTAAAGCCCAAAGAGACAATATCTGTCCGTAGTGAACTTGGGTGGTTACAATATCAATAATGTCGTTTTTTTGTGTTTAAACGATTATGTGAATGAAGTACGGGTTGGCTAATTAATGCAACTTCTTCGTCTTAATCTACAAAATCTCGACCCTTTTATCGAGACATGGATAGCTAATTATCACGTAAATAGATTAATTTAAAAATGGAAAGTTATTATTATTATTTTGGTGAAAAAATAATGTAAATAAAGAGAATAATTAATAACATGAAATTTATGTGTGTGTGTGACAGTGATTTCGTGCGGGTGGCGAAGAGAATTCGAATTCTGCCAATAAAAGCAAATTCAAGGAGGGGAAGAGGAAATAATTAAATTATATATATTTTATGACAAACCCATC

mRNA sequence

TTTTCTCTCAAAATCTAAACCCATGAACACCTTCCACTCTCACACACAATCCCCAGCCGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTTCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTATGAGAGCCTTGCTAAGGCCCTCAGAAGGATGTTCGTTGACGACGATGACGGTGGCTGCGGCGGCGGTGGCGGTGGCGAACCCTCCTGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTCCTTGCCGGTGATCTCAATTGGAATGATTTCGTGCGGGTGGCGAAGAGAATTCGAATTCTGCCAATAAAAGCAAATTCAAGGAGGGGAAGAGGAAATAATTAAATTATATATATTTTATGACAAACCCATC

Coding sequence (CDS)

ATGAACACCTTCCACTCTCACACACAATCCCCAGCCGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTTCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTATGAGAGCCTTGCTAAGGCCCTCAGAAGGATGTTCGTTGACGACGATGACGGTGGCTGCGGCGGCGGTGGCGGTGGCGAACCCTCCTGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTCCTTGCCGGTGATCTCAATTGGAATGATTTCGTGCGGGTGGCGAAGAGAATTCGAATTCTGCCAATAAAAGCAAATTCAAGGAGGGGAAGAGGAAATAATTAA

Homology

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BLAST of CmoCh12G008890 vs. Swiss-Prot
Match: IAA33_ARATH (Auxin-responsive protein IAA33 OS=Arabidopsis thaliana GN=IAA33 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.9e-36
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1


Query: 48  EEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEP 107
           E++  ++V+PPVTVVLEGR+ICQRISL KH SY+SLA ALR+MFVD           G  
Sbjct: 64  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD-----------GAD 123

Query: 108 SCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRGN 167
           S D  LDL+NA+PGHL+AYED+ENDLLLAGDL W DFVRVAKRIRILP+K N+R+ + N
Sbjct: 124 STD-DLDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPVKGNTRQVKRN 170

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BLAST of CmoCh12G008890 vs. Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.3e-09
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 59  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQLDLANA 118
           V V  EG AI +++ L  H+SY+ LA  L RMF  +D  G       + + D   D A  
Sbjct: 95  VKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQG-----EKKMANDDHGDAA-- 154

Query: 119 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 155
             G +V YED + D +L GD+ W+DF R  KR++IL
Sbjct: 155 --GPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181

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BLAST of CmoCh12G008890 vs. Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 59  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQLDLANA 118
           + V ++G AI +++ L+ H+SYE+LA+ L  MF   + G  G          + L L + 
Sbjct: 132 IKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTS----QFTKPLRLLDG 191

Query: 119 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 155
               ++ YED E D +L GD+ W  F+   KR+R++
Sbjct: 192 SSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVM 223

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BLAST of CmoCh12G008890 vs. Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-07
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 1


Query: 39  QMEEEEEEEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGG 98
           + + ++++EE E    V   V V ++G  I +++ L+ H SY++LA AL  MF     G 
Sbjct: 146 ESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGL 205

Query: 99  CGGGGGGEPSCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 155
           C             L L +    + + YED + D +L GD+ W  FV   KR+RI+
Sbjct: 206 CASHN------TNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIM 255

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BLAST of CmoCh12G008890 vs. Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-07
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 1


Query: 39  QMEEEEEEEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGG 98
           + + ++++EE E    V   V V ++G  I +++ L+ H SY++LA AL  MF     G 
Sbjct: 146 ESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGL 205

Query: 99  CGGGGGGEPSCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 155
           C             L L +    + + YED + D +L GD+ W  FV   KR+RI+
Sbjct: 206 CASHN------TNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIM 255

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BLAST of CmoCh12G008890 vs. TrEMBL
Match: A0A0A0LH98_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G059200 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 9.6e-53
Identity = 118/161 (73.29%), Postives = 127/161 (78.88%), Query Frame = 1


Query: 8   TQSPAAAA--EYFKMRRWPETQLGSPPLQQQQQQMEEEEEEEEEEDFAAVIPPVTVVLEG 67
           TQSPAAAA  EYFKM RW + ++ SPP             ++ EEDFAAVIPPVTVVLEG
Sbjct: 4   TQSPAAAAAAEYFKMTRWADRRV-SPP-------------QQAEEDFAAVIPPVTVVLEG 63

Query: 68  RAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQLDLANAVPGHLVA 127
           RAICQRISLHKH SYESLAKALRRMFVDDDD        GE S +R LDL NAVPG++VA
Sbjct: 64  RAICQRISLHKHGSYESLAKALRRMFVDDDDND------GEDSGERGLDLTNAVPGYIVA 123

Query: 128 YEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRGN 167
           YEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRRGR N
Sbjct: 124 YEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRAN 144

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BLAST of CmoCh12G008890 vs. TrEMBL
Match: B9T1W9_RICCO (Auxin-responsive protein OS=Ricinus communis GN=RCOM_0306050 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-40
Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 46  EEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGG 105
           +++++  + V+PPVTVVLEGR+ICQRISLHKHASY+SLA ALR+MFVD      GG  GG
Sbjct: 58  DDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAMALRQMFVD------GGDAGG 117

Query: 106 EPSCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRG 165
               D  LDL NAVPGHL+AYED+ENDLLLAGDLNW DFVRVAKRIRILP+K NSR+GRG
Sbjct: 118 VTDSDTDLDLTNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRIRILPVKGNSRKGRG 171

[Close]

BLAST of CmoCh12G008890 vs. TrEMBL
Match: U5GBB1_POPTR (Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0006s18260g PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-38
Identity = 85/121 (70.25%), Postives = 95/121 (78.51%), Query Frame = 1


Query: 47  EEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVD--DDDGGCGGGGG 106
           E+++  + +IPPVTVVLEGR+ICQRISLHKHASY SLAKALR+MFVD   D GG      
Sbjct: 50  EDDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGGSDSGGSTASSA 109

Query: 107 GEPSCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGR 166
            E   D  LDL NAVPGHL+AYEDIE+DLLLAGDLNW DFVRVAKRIRILP K NSR+  
Sbjct: 110 SESVSDHDLDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKRIRILPAKGNSRKRT 169

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BLAST of CmoCh12G008890 vs. TrEMBL
Match: A0A061GQU1_THECC (Auxin-responsive protein OS=Theobroma cacao GN=TCM_039219 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38
Identity = 82/119 (68.91%), Postives = 99/119 (83.19%), Query Frame = 1


Query: 47  EEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGE 106
           ++++  ++V+PPVTVVLEGR+ICQRISLH HASY SLAKALR+MFV+ +D G        
Sbjct: 64  DDDDLVSSVVPPVTVVLEGRSICQRISLHNHASYHSLAKALRQMFVEGNDDG-------- 123

Query: 107 PSCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRG 166
           P+ + +LDL+NAVPGHLVAYED+ENDLLLAGDLNW DFVRVAKRIRILP K NSR+ RG
Sbjct: 124 PTSENELDLSNAVPGHLVAYEDMENDLLLAGDLNWKDFVRVAKRIRILPAKGNSRKIRG 174

[Close]

BLAST of CmoCh12G008890 vs. TrEMBL
Match: D7SQA8_VITVI (Auxin-responsive protein OS=Vitis vinifera GN=VIT_11s0052g00870 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-38
Identity = 96/175 (54.86%), Postives = 114/175 (65.14%), Query Frame = 1


Query: 1   MNTFHSHTQSPAAAAEYFKMRRWPETQLGSP----------PLQQQQQQMEEEEEEEEEE 60
           MNTF    Q+     + F  RRW +    S           P Q     ++      +++
Sbjct: 1   MNTFRFQHQTQ----DSFDSRRWSQNHRPSSAGFYARRAAAPPQPSSSSIQTFPGLADDD 60

Query: 61  DFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCD 120
             AAV+PPVTVVLEGR+IC RISLH HASY+SLA+ALR+MFVD      G  GG     D
Sbjct: 61  LVAAVVPPVTVVLEGRSICHRISLHSHASYQSLARALRQMFVDGSSADVGAAGG-----D 120

Query: 121 RQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRG 166
            +LDL+NAVPGHL+AYED+ENDLLLAGDLNW DFVRVAKRIRILP K NSR+GRG
Sbjct: 121 HELDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRIRILPAKRNSRKGRG 166

[Close]

BLAST of CmoCh12G008890 vs. TAIR10
Match: AT5G57420.1 (AT5G57420.1 indole-3-acetic acid inducible 33)

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1


Query: 48  EEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEP 107
           E++  ++V+PPVTVVLEGR+ICQRISL KH SY+SLA ALR+MFVD           G  
Sbjct: 64  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD-----------GAD 123

Query: 108 SCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRGN 167
           S D  LDL+NA+PGHL+AYED+ENDLLLAGDL W DFVRVAKRIRILP+K N+R+ + N
Sbjct: 124 STD-DLDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPVKGNTRQVKRN 170

[Close]

BLAST of CmoCh12G008890 vs. TAIR10
Match: AT2G33310.2 (AT2G33310.2 auxin-induced protein 13)

HSP 1 Score: 57.4 bits (137), Expect = 9.9e-09
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 59  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQLDLANA 118
           + V ++G AI +++ L+ H+SYE+LA+ L  MF   + G  G          + L L + 
Sbjct: 132 IKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTS----QFTKPLRLLDG 191

Query: 119 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 155
               ++ YED E D +L GD+ W  F+   KR+R++
Sbjct: 192 SSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVM 223

[Close]

BLAST of CmoCh12G008890 vs. TAIR10
Match: AT1G04550.2 (AT1G04550.2 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-08
Identity = 30/96 (31.25%), Postives = 48/96 (50.00%), Query Frame = 1


Query: 59  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQLDLANA 118
           V V ++G  I +++ +  H+SYE+LA+ L  MF       C           + L L + 
Sbjct: 127 VKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCR-------EKVKPLRLLDG 186

Query: 119 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 155
               ++ YED E D +L GD+ W  F+   KR+RI+
Sbjct: 187 SSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIM 215

[Close]

BLAST of CmoCh12G008890 vs. TAIR10
Match: AT4G28640.2 (AT4G28640.2 indole-3-acetic acid inducible 11)

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-07
Identity = 31/96 (32.29%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 59  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQLDLANA 118
           V V ++G  I ++I L+ H  YESL+  L  MF+    G       G      ++ L + 
Sbjct: 139 VKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKI-LPDG 198

Query: 119 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 155
             G ++ YED E D +L GD+ W  F+   +R+RI+
Sbjct: 199 SSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIM 233

[Close]

BLAST of CmoCh12G008890 vs. TAIR10
Match: AT3G04730.1 (AT3G04730.1 indoleacetic acid-induced protein 16)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-07
Identity = 34/102 (33.33%), Postives = 53/102 (51.96%), Query Frame = 1


Query: 54  AVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQL 113
           A +  V V ++G    ++I L  + +Y+ L+ AL +MF     G  G  G  +   + +L
Sbjct: 116 ATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKL 175

Query: 114 -DLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 155
            DL N    ++  YED + D +L GD+ W  FV   KRIRI+
Sbjct: 176 IDLLNG-SDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIM 216

[Close]

BLAST of CmoCh12G008890 vs. NCBI nr
Match: gi|659069771|ref|XP_008451708.1| (PREDICTED: auxin-responsive protein IAA33 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.6e-53
Identity = 117/161 (72.67%), Postives = 127/161 (78.88%), Query Frame = 1


Query: 8   TQSPAAAA--EYFKMRRWPETQLGSPPLQQQQQQMEEEEEEEEEEDFAAVIPPVTVVLEG 67
           TQSPAAAA  EYFKM RW E ++G P              ++ EEDF+AVIPPVTVVLEG
Sbjct: 4   TQSPAAAAAAEYFKMARWAERRVGPP--------------QQAEEDFSAVIPPVTVVLEG 63

Query: 68  RAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQLDLANAVPGHLVA 127
           RAICQRISLHKH SYESLAKALRRMFVDDDD G       E S +R+LDL NAVPG++VA
Sbjct: 64  RAICQRISLHKHGSYESLAKALRRMFVDDDDEG-------EESGERRLDLTNAVPGYIVA 123

Query: 128 YEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRGN 167
           YEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRRGR N
Sbjct: 124 YEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRAN 143

[Close]

BLAST of CmoCh12G008890 vs. NCBI nr
Match: gi|449466673|ref|XP_004151050.1| (PREDICTED: auxin-responsive protein IAA33 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-52
Identity = 118/161 (73.29%), Postives = 127/161 (78.88%), Query Frame = 1


Query: 8   TQSPAAAA--EYFKMRRWPETQLGSPPLQQQQQQMEEEEEEEEEEDFAAVIPPVTVVLEG 67
           TQSPAAAA  EYFKM RW + ++ SPP             ++ EEDFAAVIPPVTVVLEG
Sbjct: 4   TQSPAAAAAAEYFKMTRWADRRV-SPP-------------QQAEEDFAAVIPPVTVVLEG 63

Query: 68  RAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGEPSCDRQLDLANAVPGHLVA 127
           RAICQRISLHKH SYESLAKALRRMFVDDDD        GE S +R LDL NAVPG++VA
Sbjct: 64  RAICQRISLHKHGSYESLAKALRRMFVDDDDND------GEDSGERGLDLTNAVPGYIVA 123

Query: 128 YEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRGN 167
           YEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRRGR N
Sbjct: 124 YEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRAN 144

[Close]

BLAST of CmoCh12G008890 vs. NCBI nr
Match: gi|255582934|ref|XP_002532238.1| (PREDICTED: auxin-responsive protein IAA33 [Ricinus communis])

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-40
Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 46  EEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGG 105
           +++++  + V+PPVTVVLEGR+ICQRISLHKHASY+SLA ALR+MFVD      GG  GG
Sbjct: 58  DDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAMALRQMFVD------GGDAGG 117

Query: 106 EPSCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRG 165
               D  LDL NAVPGHL+AYED+ENDLLLAGDLNW DFVRVAKRIRILP+K NSR+GRG
Sbjct: 118 VTDSDTDLDLTNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRIRILPVKGNSRKGRG 171

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BLAST of CmoCh12G008890 vs. NCBI nr
Match: gi|566176869|ref|XP_006381794.1| (hypothetical protein POPTR_0006s18260g [Populus trichocarpa])

HSP 1 Score: 166.8 bits (421), Expect = 3.3e-38
Identity = 85/121 (70.25%), Postives = 95/121 (78.51%), Query Frame = 1


Query: 47  EEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVD--DDDGGCGGGGG 106
           E+++  + +IPPVTVVLEGR+ICQRISLHKHASY SLAKALR+MFVD   D GG      
Sbjct: 50  EDDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGGSDSGGSTASSA 109

Query: 107 GEPSCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGR 166
            E   D  LDL NAVPGHL+AYEDIE+DLLLAGDLNW DFVRVAKRIRILP K NSR+  
Sbjct: 110 SESVSDHDLDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKRIRILPAKGNSRKRT 169

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BLAST of CmoCh12G008890 vs. NCBI nr
Match: gi|590581165|ref|XP_007014272.1| (Indole-3-acetic acid inducible 33 [Theobroma cacao])

HSP 1 Score: 166.4 bits (420), Expect = 4.3e-38
Identity = 82/119 (68.91%), Postives = 99/119 (83.19%), Query Frame = 1


Query: 47  EEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGGGGGGE 106
           ++++  ++V+PPVTVVLEGR+ICQRISLH HASY SLAKALR+MFV+ +D G        
Sbjct: 64  DDDDLVSSVVPPVTVVLEGRSICQRISLHNHASYHSLAKALRQMFVEGNDDG-------- 123

Query: 107 PSCDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRGRG 166
           P+ + +LDL+NAVPGHLVAYED+ENDLLLAGDLNW DFVRVAKRIRILP K NSR+ RG
Sbjct: 124 PTSENELDLSNAVPGHLVAYEDMENDLLLAGDLNWKDFVRVAKRIRILPAKGNSRKIRG 174

The following BLAST results are available for this feature:

BLAST of CmoCh12G008890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAA33_ARATH	8.9e-36	64.71	Auxin-responsive protein IAA33 OS=Arabidopsis thaliana GN=IAA33 PE=2 SV=1	[more]
IAA9_ORYSJ	9.3e-09	39.58	Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1	[more]
IAA13_ARATH	1.8e-07	32.29	Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2	[more]
IAA10_ORYSJ	8.7e-07	31.03	Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=...	[more]
IAA10_ORYSI	8.7e-07	31.03	Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2	[more]

BLAST of CmoCh12G008890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH98_CUCSA	9.6e-53	73.29	Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G059200 PE=3 SV=1	[more]
B9T1W9_RICCO	1.9e-40	70.83	Auxin-responsive protein OS=Ricinus communis GN=RCOM_0306050 PE=3 SV=1	[more]
U5GBB1_POPTR	2.3e-38	70.25	Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0006s18260g PE=3 SV=1	[more]
A0A061GQU1_THECC	3.0e-38	68.91	Auxin-responsive protein OS=Theobroma cacao GN=TCM_039219 PE=3 SV=1	[more]
D7SQA8_VITVI	3.9e-38	54.86	Auxin-responsive protein OS=Vitis vinifera GN=VIT_11s0052g00870 PE=3 SV=1	[more]

BLAST of CmoCh12G008890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57420.1	5.0e-37	64.71	indole-3-acetic acid inducible 33	[more]
AT2G33310.2	9.9e-09	32.29	auxin-induced protein 13	[more]
AT1G04550.2	8.4e-08	31.25	AUX/IAA transcriptional regulator family protein	[more]
AT4G28640.2	3.2e-07	32.29	indole-3-acetic acid inducible 11	[more]
AT3G04730.1	4.2e-07	33.33	indoleacetic acid-induced protein 16	[more]

BLAST of CmoCh12G008890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069771\|ref\|XP_008451708.1\|	1.6e-53	72.67	PREDICTED: auxin-responsive protein IAA33 [Cucumis melo]	[more]
gi\|449466673\|ref\|XP_004151050.1\|	1.4e-52	73.29	PREDICTED: auxin-responsive protein IAA33 [Cucumis sativus]	[more]
gi\|255582934\|ref\|XP_002532238.1\|	2.7e-40	70.83	PREDICTED: auxin-responsive protein IAA33 [Ricinus communis]	[more]
gi\|566176869\|ref\|XP_006381794.1\|	3.3e-38	70.25	hypothetical protein POPTR_0006s18260g [Populus trichocarpa]	[more]
gi\|590581165\|ref\|XP_007014272.1\|	4.3e-38	68.91	Indole-3-acetic acid inducible 33 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom
IPR003311	AUX_IAA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008890.1	CmoCh12G008890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 56..158 score: 14
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 31..162 score: 6.1
None	No IPR available	unknown	Coil	Coil	coord: 33..53 scor
None	No IPR available	PANTHER	PTHR31734:SF7	AUXIN-RESPONSIVE PROTEIN IAA33	coord: 31..162 score: 6.1
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 70..155 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G008890	Cucsa.089360	Cucumber (Gy14) v1	cgycmoB0176
CmoCh12G008890	CmaCh12G008810	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G008890	Cla022821	Watermelon (97103) v1	cmowmB163
CmoCh12G008890	Csa2G059200	Cucumber (Chinese Long) v2	cmocuB150
CmoCh12G008890	MELO3C004026	Melon (DHL92) v3.5.1	cmomeB164
CmoCh12G008890	ClCG11G012160	Watermelon (Charleston Gray)	cmowcgB135
CmoCh12G008890	CSPI02G06010	Wild cucumber (PI 183967)	cmocpiB151
CmoCh12G008890	Lsi11G007570	Bottle gourd (USVL1VR-Ls)	cmolsiB143
CmoCh12G008890	Cp4.1LG07g07370	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G008890	MELO3C004026.2	Melon (DHL92) v3.6.1	cmomedB181
CmoCh12G008890	CsaV3_2G008380	Cucumber (Chinese Long) v3	cmocucB0177
CmoCh12G008890	Cla97C11G218060	Watermelon (97103) v2	cmowmbB157
CmoCh12G008890	Bhi06G001123	Wax gourd	cmowgoB0181
CmoCh12G008890	CsGy2G006130	Cucumber (Gy14) v2	cgybcmoB161
CmoCh12G008890	Carg27566	Silver-seed gourd	carcmoB0318

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G008890	Cucurbita pepo (Zucchini)	cmocpeB149
CmoCh12G008890	Cucurbita pepo (Zucchini)	cmocpeB157
CmoCh12G008890	Cucurbita pepo (Zucchini)	cmocpeB168
CmoCh12G008890	Bottle gourd (USVL1VR-Ls)	cmolsiB170
CmoCh12G008890	Cucumber (Gy14) v2	cgybcmoB052
CmoCh12G008890	Melon (DHL92) v3.6.1	cmomedB158
CmoCh12G008890	Silver-seed gourd	carcmoB0079
CmoCh12G008890	Silver-seed gourd	carcmoB0809
CmoCh12G008890	Cucumber (Chinese Long) v3	cmocucB0167
CmoCh12G008890	Watermelon (97103) v2	cmowmbB172
CmoCh12G008890	Wax gourd	cmowgoB0228
CmoCh12G008890	Cucurbita moschata (Rifu)	cmocmoB085
CmoCh12G008890	Cucurbita moschata (Rifu)	cmocmoB149
CmoCh12G008890	Cucurbita maxima (Rimu)	cmacmoB124
CmoCh12G008890	Cucurbita maxima (Rimu)	cmacmoB764
CmoCh12G008890	Wild cucumber (PI 183967)	cmocpiB144
CmoCh12G008890	Cucumber (Chinese Long) v2	cmocuB144
CmoCh12G008890	Melon (DHL92) v3.5.1	cmomeB142
CmoCh12G008890	Watermelon (Charleston Gray)	cmowcgB154
CmoCh12G008890	Watermelon (97103) v1	cmowmB167