CmaCh12G008810 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G008810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	AUX/IAA transcription factor
Location	Cma_Chr12 : 6660978 .. 6662657 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCTTCCACTCTCACACACAATCCCCCGCCGCCGCTGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTCCTCCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTACGAGAGCCTTGCTAAGGCCCTTAGAAGGATGTTCGTTGACGACGATGACGGCGGCTGCGGCAGCGGTGGCGGTGGCGAACCCTCCGGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTTCTTGCCGGTGATCTCAATTGGAAGTCAGTACTCTCAATTTCTCTCGATTTATTTATTTATTTATTATTTAAGAAAAAATGGGATTTTTACAATTAAAATTTTATATAATACATTAACAAATTTTTATTTGTTCTTAATAATGGAATTTTATTTTAAAAAATTCTAAAATTTAACAAATTTGCTCTATTTATAGATGTGCTTTAAATTAGGGTAATCTAAGGAATTATTTGATAAAGGATTTAATTTTTATTTTTAAAAACTAGATGTTTGTTATAAAATTCCTTAATTCTATTATTGAAATTTAATTTATGATTTTAAAATATCTATAAAAACTAATAGAAACTCCTCCAAATTTGAATTTCCACCCATATTAATCAAAACCTCTAATAAAATAACAGGGTGGAAATCTTCCCATAGCAAACGTGATCGAAATAAAACAATATCTACTAGTTATGGGCAATATCTACTAGTTATGGGTCTAGGTCGTTACAAATGGTATCAAAAGTAGGGAGGAGACTATTCCCCACAAAGGTAGACAGAGAGGGTGTGCCAATAAAATAAGGACTAGCAAGGACGCTGGGCCCAAAATAGGTGGATTTGATGGGGTCTTACATTGATTGGAGAAAAGAAAGAGTGCTAGCCCCATTGATTGGAGAAAAGAACGAAGGTCAGCGAGCGTTCTGAGCTCTAAAGGGGTAGCGAGAGCCCTGAGCTCTAAAAGGGTGAATTGTGATATCCCACGTTTGTTGGGGACTCATTGAGCTCTGAAGGGGTGGATTGTGATGTCTCACGTTTGTTGGGGACTCATTGAGCTCTAAAGGGGGTGGATTGTGATGTCCCACGTTTGTTGGGGACTCGTTGAGCTCTGAAGGGGGTGGATTGTGATGTCCACATTAGTTGGGGACTCTCTAAGCTCTGAAGGGGGTGGATTGTGACCTCCCACATTGGTGGAGAGGAGAACAAAACACCTTTATAAGGAAGAAGACAATGTCTGCCCGCGTGGACCCGGACCGTTACAATATCAATCTTTTATCGACACATGGATAGCTAATTATCACGTAAATTGATTAATTTAAAAATGGGAAGTAATTATTATTATTATTATCATTATTTTTTGGTGAAAAAATAATGTAAATAAAGAGAATAATTAATAACATGAAATTCATGTGTATGTGTGGCAGTGATTTCGTGCGGGTGGCGAAGAGAATTCGAATACTGCCAATAAAAGCAAATTCAAGGAGGCGAAGAGGAAATAATTAAATTATATATTTTATGAGAAACCCATCT

mRNA sequence

ATGAACACCTTCCACTCTCACACACAATCCCCCGCCGCCGCTGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTCCTCCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTACGAGAGCCTTGCTAAGGCCCTTAGAAGGATGTTCGTTGACGACGATGACGGCGGCTGCGGCAGCGGTGGCGGTGGCGAACCCTCCGGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTTCTTGCCGGTGATCTCAATTGGAATGATTTCGTGCGGGTGGCGAAGAGAATTCGAATACTGCCAATAAAAGCAAATTCAAGGAGGCGAAGAGGAAATAATTAAATTATATATTTTATGAGAAACCCATCT

Coding sequence (CDS)

ATGAACACCTTCCACTCTCACACACAATCCCCCGCCGCCGCTGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTCCTCCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTACGAGAGCCTTGCTAAGGCCCTTAGAAGGATGTTCGTTGACGACGATGACGGCGGCTGCGGCAGCGGTGGCGGTGGCGAACCCTCCGGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTTCTTGCCGGTGATCTCAATTGGAATGATTTCGTGCGGGTGGCGAAGAGAATTCGAATACTGCCAATAAAAGCAAATTCAAGGAGGCGAAGAGGAAATAATTAA

Protein sequence

MNTFHSHTQSPAAAAAAEYFKMRRWPETQLGPPPPLQQQQQQMEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGNN

Homology

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BLAST of CmaCh12G008810 vs. Swiss-Prot
Match: IAA33_ARATH (Auxin-responsive protein IAA33 OS=Arabidopsis thaliana GN=IAA33 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-35
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 45  EEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEP 104
           E++  ++V+PPVTVVLEGR+ICQRISL KH SY+SLA ALR+MFVD          G + 
Sbjct: 64  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD----------GADS 123

Query: 105 SGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGN 164
           + D  LDL+NA+PGHL+AYED+ENDLLLAGDL W DFVRVAKRIRILP+K N+R+ + N
Sbjct: 124 TDD--LDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPVKGNTRQVKRN 170

[Close]

BLAST of CmaCh12G008810 vs. Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANA 115
           V V  EG AI +++ L  H+SY+ LA  L RMF  +D  G       + + D   D A  
Sbjct: 95  VKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQG-----EKKMANDDHGDAA-- 154

Query: 116 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
             G +V YED + D +L GD+ W+DF R  KR++IL
Sbjct: 155 --GPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181

[Close]

BLAST of CmaCh12G008810 vs. Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 38/112 (33.93%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 40  QQQMEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSG 99
           Q+  EE E    V   V V ++G  I +++ L+ H SY++LA AL  MF     G C S 
Sbjct: 150 QKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCAS- 209

Query: 100 GGGEPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
                     L L +    + + YED + D +L GD+ W  FV   KR+RI+
Sbjct: 210 -----HNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIM 255

[Close]

BLAST of CmaCh12G008810 vs. Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 38/112 (33.93%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 40  QQQMEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSG 99
           Q+  EE E    V   V V ++G  I +++ L+ H SY++LA AL  MF     G C S 
Sbjct: 150 QKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCAS- 209

Query: 100 GGGEPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
                     L L +    + + YED + D +L GD+ W  FV   KR+RI+
Sbjct: 210 -----HNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIM 255

[Close]

BLAST of CmaCh12G008810 vs. Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 50/162 (30.86%), Postives = 78/162 (48.15%), Query Frame = 1


Query: 6   SHTQSPAAAAAAEYFKMRRWPETQLGPPPPLQQQQQ-----QMEEEEDFA---------- 65
           S +QS    AAA+  K R  P+ Q+   PP++  ++     Q ++ +D A          
Sbjct: 98  SPSQSSVVTAAADPEKPRA-PKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAG 157

Query: 66  -AVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQ 125
            A    V V ++G    +++ L  + SY  L+KAL +MF     G CGS G    +  + 
Sbjct: 158 AAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKI 217

Query: 126 LDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
            DL N    ++  YED + D +L GD+ W  FV   KR+RI+
Sbjct: 218 ADLLNG-SEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 257

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BLAST of CmaCh12G008810 vs. TrEMBL
Match: A0A0A0LH98_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G059200 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.1e-56
Identity = 119/156 (76.28%), Postives = 127/156 (81.41%), Query Frame = 1


Query: 8   TQSPAAAAAAEYFKMRRWPETQLGPPPPLQQQQQQMEEEEDFAAVIPPVTVVLEGRAICQ 67
           TQSPAAAAAAEYFKM RW + ++ PP          + EEDFAAVIPPVTVVLEGRAICQ
Sbjct: 4   TQSPAAAAAAEYFKMTRWADRRVSPP---------QQAEEDFAAVIPPVTVVLEGRAICQ 63

Query: 68  RISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANAVPGHLVAYEDIE 127
           RISLHKH SYESLAKALRRMFVDDDD        GE SG+R LDL NAVPG++VAYEDIE
Sbjct: 64  RISLHKHGSYESLAKALRRMFVDDDDND------GEDSGERGLDLTNAVPGYIVAYEDIE 123

Query: 128 NDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGN 164
           NDLLLAGDLNWNDFVRVAKRIRILP+KANSRR R N
Sbjct: 124 NDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRAN 144

[Close]

BLAST of CmaCh12G008810 vs. TrEMBL
Match: U5GBB1_POPTR (Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0006s18260g PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.7e-39
Identity = 86/121 (71.07%), Postives = 97/121 (80.17%), Query Frame = 1


Query: 44  EEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVD--DDDGGCGSGGG 103
           E+++  + +IPPVTVVLEGR+ICQRISLHKHASY SLAKALR+MFVD   D GG  +   
Sbjct: 50  EDDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGGSDSGGSTASSA 109

Query: 104 GEPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRR 163
            E   D  LDL NAVPGHL+AYEDIE+DLLLAGDLNW DFVRVAKRIRILP K NSR+R 
Sbjct: 110 SESVSDHDLDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKRIRILPAKGNSRKRT 169

[Close]

BLAST of CmaCh12G008810 vs. TrEMBL
Match: D7SQA8_VITVI (Auxin-responsive protein OS=Vitis vinifera GN=VIT_11s0052g00870 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.9e-39
Identity = 96/177 (54.24%), Postives = 114/177 (64.41%), Query Frame = 1


Query: 1   MNTFHSHTQSPAAAAAAEYFKMRRWPETQ------------LGPPPPLQQQQQQ---MEE 60
           MNTF    Q+       + F  RRW +                PP P     Q    + +
Sbjct: 1   MNTFRFQHQTQ------DSFDSRRWSQNHRPSSAGFYARRAAAPPQPSSSSIQTFPGLAD 60

Query: 61  EEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPS 120
           ++  AAV+PPVTVVLEGR+IC RISLH HASY+SLA+ALR+MFVD      G+ GG    
Sbjct: 61  DDLVAAVVPPVTVVLEGRSICHRISLHSHASYQSLARALRQMFVDGSSADVGAAGG---- 120

Query: 121 GDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRG 163
            D +LDL+NAVPGHL+AYED+ENDLLLAGDLNW DFVRVAKRIRILP K NSR+ RG
Sbjct: 121 -DHELDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRIRILPAKRNSRKGRG 166

[Close]

BLAST of CmaCh12G008810 vs. TrEMBL
Match: B9T1W9_RICCO (Auxin-responsive protein OS=Ricinus communis GN=RCOM_0306050 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 44  EEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGE 103
           ++++  + V+PPVTVVLEGR+ICQRISLHKHASY+SLA ALR+MFVD      G   GG 
Sbjct: 59  DDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAMALRQMFVD------GGDAGGV 118

Query: 104 PSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRG 163
              D  LDL NAVPGHL+AYED+ENDLLLAGDLNW DFVRVAKRIRILP+K NSR+ RG
Sbjct: 119 TDSDTDLDLTNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRIRILPVKGNSRKGRG 171

[Close]

BLAST of CmaCh12G008810 vs. TrEMBL
Match: A0A061GQU1_THECC (Auxin-responsive protein OS=Theobroma cacao GN=TCM_039219 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-38
Identity = 82/120 (68.33%), Postives = 100/120 (83.33%), Query Frame = 1


Query: 43  MEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGG 102
           +++++  ++V+PPVTVVLEGR+ICQRISLH HASY SLAKALR+MFV+ +D G       
Sbjct: 63  LDDDDLVSSVVPPVTVVLEGRSICQRISLHNHASYHSLAKALRQMFVEGNDDG------- 122

Query: 103 EPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRG 162
            P+ + +LDL+NAVPGHLVAYED+ENDLLLAGDLNW DFVRVAKRIRILP K NSR+ RG
Sbjct: 123 -PTSENELDLSNAVPGHLVAYEDMENDLLLAGDLNWKDFVRVAKRIRILPAKGNSRKIRG 174

[Close]

BLAST of CmaCh12G008810 vs. TAIR10
Match: AT5G57420.1 (AT5G57420.1 indole-3-acetic acid inducible 33)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 45  EEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEP 104
           E++  ++V+PPVTVVLEGR+ICQRISL KH SY+SLA ALR+MFVD          G + 
Sbjct: 64  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD----------GADS 123

Query: 105 SGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGN 164
           + D  LDL+NA+PGHL+AYED+ENDLLLAGDL W DFVRVAKRIRILP+K N+R+ + N
Sbjct: 124 TDD--LDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPVKGNTRQVKRN 170

[Close]

BLAST of CmaCh12G008810 vs. TAIR10
Match: AT2G33310.2 (AT2G33310.2 auxin-induced protein 13)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANA 115
           + V ++G AI +++ L+ H+SYE+LA+ L  MF   + G  G          + L L + 
Sbjct: 132 IKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTS----QFTKPLRLLDG 191

Query: 116 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
               ++ YED E D +L GD+ W  F+   KR+R++
Sbjct: 192 SSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVM 223

[Close]

BLAST of CmaCh12G008810 vs. TAIR10
Match: AT5G65670.1 (AT5G65670.1 indole-3-acetic acid inducible 9)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 29/98 (29.59%), Postives = 52/98 (53.06%), Query Frame = 1


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANA 115
           V V ++G    +++ L  + +Y  L+ AL +MF     G CGS G        +  L + 
Sbjct: 219 VKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDL 278

Query: 116 VPG--HLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
           + G  +++ YED + D +L GD+ W  F+ V K+++I+
Sbjct: 279 LNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIM 316

[Close]

BLAST of CmaCh12G008810 vs. TAIR10
Match: AT1G04550.2 (AT1G04550.2 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 35/118 (29.66%), Postives = 56/118 (47.46%), Query Frame = 1


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANA 115
           V V ++G  I +++ +  H+SYE+LA+ L  MF        G  G       + L L + 
Sbjct: 127 VKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFF-------GMTGTTCREKVKPLRLLDG 186

Query: 116 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL---------PIKANSRRRRGNN 165
               ++ YED E D +L GD+ W  F+   KR+RI+         P +   + R+ NN
Sbjct: 187 SSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQRNN 237

[Close]

BLAST of CmaCh12G008810 vs. TAIR10
Match: AT3G04730.1 (AT3G04730.1 indoleacetic acid-induced protein 16)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-07
Identity = 34/102 (33.33%), Postives = 53/102 (51.96%), Query Frame = 1


Query: 51  AVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQL 110
           A +  V V ++G    ++I L  + +Y+ L+ AL +MF     G  G  G  +   + +L
Sbjct: 116 ATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKL 175

Query: 111 -DLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
            DL N    ++  YED + D +L GD+ W  FV   KRIRI+
Sbjct: 176 IDLLNG-SDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIM 216

[Close]

BLAST of CmaCh12G008810 vs. NCBI nr
Match: gi|659069771|ref|XP_008451708.1| (PREDICTED: auxin-responsive protein IAA33 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 4.0e-57
Identity = 120/156 (76.92%), Postives = 129/156 (82.69%), Query Frame = 1


Query: 8   TQSPAAAAAAEYFKMRRWPETQLGPPPPLQQQQQQMEEEEDFAAVIPPVTVVLEGRAICQ 67
           TQSPAAAAAAEYFKM RW E ++GPP          + EEDF+AVIPPVTVVLEGRAICQ
Sbjct: 4   TQSPAAAAAAEYFKMARWAERRVGPP---------QQAEEDFSAVIPPVTVVLEGRAICQ 63

Query: 68  RISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANAVPGHLVAYEDIE 127
           RISLHKH SYESLAKALRRMFVDDDD G       E SG+R+LDL NAVPG++VAYEDIE
Sbjct: 64  RISLHKHGSYESLAKALRRMFVDDDDEG-------EESGERRLDLTNAVPGYIVAYEDIE 123

Query: 128 NDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGN 164
           NDLLLAGDLNWNDFVRVAKRIRILP+KANSRR R N
Sbjct: 124 NDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRAN 143

[Close]

BLAST of CmaCh12G008810 vs. NCBI nr
Match: gi|449466673|ref|XP_004151050.1| (PREDICTED: auxin-responsive protein IAA33 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 4.5e-56
Identity = 119/156 (76.28%), Postives = 127/156 (81.41%), Query Frame = 1


Query: 8   TQSPAAAAAAEYFKMRRWPETQLGPPPPLQQQQQQMEEEEDFAAVIPPVTVVLEGRAICQ 67
           TQSPAAAAAAEYFKM RW + ++ PP          + EEDFAAVIPPVTVVLEGRAICQ
Sbjct: 4   TQSPAAAAAAEYFKMTRWADRRVSPP---------QQAEEDFAAVIPPVTVVLEGRAICQ 63

Query: 68  RISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANAVPGHLVAYEDIE 127
           RISLHKH SYESLAKALRRMFVDDDD        GE SG+R LDL NAVPG++VAYEDIE
Sbjct: 64  RISLHKHGSYESLAKALRRMFVDDDDND------GEDSGERGLDLTNAVPGYIVAYEDIE 123

Query: 128 NDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGN 164
           NDLLLAGDLNWNDFVRVAKRIRILP+KANSRR R N
Sbjct: 124 NDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRAN 144

[Close]

BLAST of CmaCh12G008810 vs. NCBI nr
Match: gi|566176869|ref|XP_006381794.1| (hypothetical protein POPTR_0006s18260g [Populus trichocarpa])

HSP 1 Score: 169.9 bits (429), Expect = 3.8e-39
Identity = 86/121 (71.07%), Postives = 97/121 (80.17%), Query Frame = 1


Query: 44  EEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVD--DDDGGCGSGGG 103
           E+++  + +IPPVTVVLEGR+ICQRISLHKHASY SLAKALR+MFVD   D GG  +   
Sbjct: 50  EDDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGGSDSGGSTASSA 109

Query: 104 GEPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRR 163
            E   D  LDL NAVPGHL+AYEDIE+DLLLAGDLNW DFVRVAKRIRILP K NSR+R 
Sbjct: 110 SESVSDHDLDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKRIRILPAKGNSRKRT 169

[Close]

BLAST of CmaCh12G008810 vs. NCBI nr
Match: gi|225446042|ref|XP_002268816.1| (PREDICTED: auxin-responsive protein IAA33 [Vitis vinifera])

HSP 1 Score: 168.7 bits (426), Expect = 8.5e-39
Identity = 96/177 (54.24%), Postives = 114/177 (64.41%), Query Frame = 1


Query: 1   MNTFHSHTQSPAAAAAAEYFKMRRWPETQ------------LGPPPPLQQQQQQ---MEE 60
           MNTF    Q+       + F  RRW +                PP P     Q    + +
Sbjct: 1   MNTFRFQHQTQ------DSFDSRRWSQNHRPSSAGFYARRAAAPPQPSSSSIQTFPGLAD 60

Query: 61  EEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPS 120
           ++  AAV+PPVTVVLEGR+IC RISLH HASY+SLA+ALR+MFVD      G+ GG    
Sbjct: 61  DDLVAAVVPPVTVVLEGRSICHRISLHSHASYQSLARALRQMFVDGSSADVGAAGG---- 120

Query: 121 GDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRG 163
            D +LDL+NAVPGHL+AYED+ENDLLLAGDLNW DFVRVAKRIRILP K NSR+ RG
Sbjct: 121 -DHELDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRIRILPAKRNSRKGRG 166

[Close]

BLAST of CmaCh12G008810 vs. NCBI nr
Match: gi|255582934|ref|XP_002532238.1| (PREDICTED: auxin-responsive protein IAA33 [Ricinus communis])

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 44  EEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGE 103
           ++++  + V+PPVTVVLEGR+ICQRISLHKHASY+SLA ALR+MFVD      G   GG 
Sbjct: 59  DDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAMALRQMFVD------GGDAGGV 118

Query: 104 PSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRG 163
              D  LDL NAVPGHL+AYED+ENDLLLAGDLNW DFVRVAKRIRILP+K NSR+ RG
Sbjct: 119 TDSDTDLDLTNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRIRILPVKGNSRKGRG 171

The following BLAST results are available for this feature:

BLAST of CmaCh12G008810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAA33_ARATH	2.6e-35	63.87	Auxin-responsive protein IAA33 OS=Arabidopsis thaliana GN=IAA33 PE=2 SV=1	[more]
IAA9_ORYSJ	1.2e-08	39.58	Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1	[more]
IAA10_ORYSJ	2.0e-08	33.93	Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=...	[more]
IAA10_ORYSI	2.0e-08	33.93	Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2	[more]
IAA30_ORYSJ	4.5e-08	30.86	Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=...	[more]

BLAST of CmaCh12G008810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH98_CUCSA	3.1e-56	76.28	Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G059200 PE=3 SV=1	[more]
U5GBB1_POPTR	2.7e-39	71.07	Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0006s18260g PE=3 SV=1	[more]
D7SQA8_VITVI	5.9e-39	54.24	Auxin-responsive protein OS=Vitis vinifera GN=VIT_11s0052g00870 PE=3 SV=1	[more]
B9T1W9_RICCO	1.0e-38	69.75	Auxin-responsive protein OS=Ricinus communis GN=RCOM_0306050 PE=3 SV=1	[more]
A0A061GQU1_THECC	1.7e-38	68.33	Auxin-responsive protein OS=Theobroma cacao GN=TCM_039219 PE=3 SV=1	[more]

BLAST of CmaCh12G008810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57420.1	1.4e-36	63.87	indole-3-acetic acid inducible 33	[more]
AT2G33310.2	1.3e-08	32.29	auxin-induced protein 13	[more]
AT5G65670.1	1.7e-08	29.59	indole-3-acetic acid inducible 9	[more]
AT1G04550.2	1.4e-07	29.66	AUX/IAA transcriptional regulator family protein	[more]
AT3G04730.1	3.1e-07	33.33	indoleacetic acid-induced protein 16	[more]

BLAST of CmaCh12G008810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069771\|ref\|XP_008451708.1\|	4.0e-57	76.92	PREDICTED: auxin-responsive protein IAA33 [Cucumis melo]	[more]
gi\|449466673\|ref\|XP_004151050.1\|	4.5e-56	76.28	PREDICTED: auxin-responsive protein IAA33 [Cucumis sativus]	[more]
gi\|566176869\|ref\|XP_006381794.1\|	3.8e-39	71.07	hypothetical protein POPTR_0006s18260g [Populus trichocarpa]	[more]
gi\|225446042\|ref\|XP_002268816.1\|	8.5e-39	54.24	PREDICTED: auxin-responsive protein IAA33 [Vitis vinifera]	[more]
gi\|255582934\|ref\|XP_002532238.1\|	1.4e-38	69.75	PREDICTED: auxin-responsive protein IAA33 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom
IPR003311	AUX_IAA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008810.1	CmaCh12G008810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 53..155 score: 14
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 38..161 score: 1.1
None	No IPR available	PANTHER	PTHR31734:SF7	AUXIN-RESPONSIVE PROTEIN IAA33	coord: 38..161 score: 1.1
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 67..152 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G008810	Cucsa.089360	Cucumber (Gy14) v1	cgycmaB0181
CmaCh12G008810	Cla022821	Watermelon (97103) v1	cmawmB176
CmaCh12G008810	Csa2G059200	Cucumber (Chinese Long) v2	cmacuB165
CmaCh12G008810	MELO3C004026	Melon (DHL92) v3.5.1	cmameB175
CmaCh12G008810	ClCG11G012160	Watermelon (Charleston Gray)	cmawcgB148
CmaCh12G008810	CSPI02G06010	Wild cucumber (PI 183967)	cmacpiB166
CmaCh12G008810	CmoCh12G008890	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G008810	Lsi11G007570	Bottle gourd (USVL1VR-Ls)	cmalsiB154
CmaCh12G008810	Cp4.1LG07g07370	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G008810	MELO3C004026.2	Melon (DHL92) v3.6.1	cmamedB190
CmaCh12G008810	CsaV3_2G008380	Cucumber (Chinese Long) v3	cmacucB0193
CmaCh12G008810	Cla97C11G218060	Watermelon (97103) v2	cmawmbB172
CmaCh12G008810	Bhi06G001123	Wax gourd	cmawgoB0184
CmaCh12G008810	CsGy2G006130	Cucumber (Gy14) v2	cgybcmaB169

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G008810	Cucurbita maxima (Rimu)	cmacmaB125
CmaCh12G008810	Cucurbita maxima (Rimu)	cmacmaB191
CmaCh12G008810	Cucurbita moschata (Rifu)	cmacmoB175
CmaCh12G008810	Cucurbita moschata (Rifu)	cmacmoB191
CmaCh12G008810	Wild cucumber (PI 183967)	cmacpiB159
CmaCh12G008810	Cucumber (Chinese Long) v2	cmacuB161
CmaCh12G008810	Melon (DHL92) v3.5.1	cmameB153
CmaCh12G008810	Watermelon (Charleston Gray)	cmawcgB165
CmaCh12G008810	Watermelon (97103) v1	cmawmB180
CmaCh12G008810	Cucurbita pepo (Zucchini)	cmacpeB175
CmaCh12G008810	Cucurbita pepo (Zucchini)	cmacpeB182
CmaCh12G008810	Cucurbita pepo (Zucchini)	cmacpeB195
CmaCh12G008810	Bottle gourd (USVL1VR-Ls)	cmalsiB180
CmaCh12G008810	Cucumber (Gy14) v2	cgybcmaB056
CmaCh12G008810	Melon (DHL92) v3.6.1	cmamedB167
CmaCh12G008810	Silver-seed gourd	carcmaB0076
CmaCh12G008810	Silver-seed gourd	carcmaB0831
CmaCh12G008810	Cucumber (Chinese Long) v3	cmacucB0182
CmaCh12G008810	Watermelon (97103) v2	cmawmbB188
CmaCh12G008810	Wax gourd	cmawgoB0235