CmoCh12G008210 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G008210
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative
Location	Cmo_Chr12 : 7403489 .. 7404082 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTCCTCCACAGCTATCTTCACGACCCGCCCGCCCGAACATATTGCGCTACGTCATATTGGTCCTAGTAGCACTAATTGTATTGGTTGGTCTCGTCGTGCTCATCATTTGGTTGACTGTTAGGCCGAAACGATTAAGCTACACGGTGGAAAGCGCTGCGGTCCATAACTTTGACATGAGCACTACTCAGCTTAATGCTTCCTTCAATTTCGGAGTGAAAGCTTACAATCCCAATAGACATGTCTCGGTTTATTATGATCATGTCACTGTTACGGTTGGGTTCGGCGATCAAGATTTGGCGTTTGGTGTGATTAAGCCCTTCTACCAACCTCACAAAGATGTGACATGGTTGAACATGGACCTTAATGCTAAAAACTTTTTGTTGCACGACTCCGTGTCGAAGGATCTAGCGCTCGAAAAGGCAGCGGGAGAGATGGATTTGGATCTTTGGATCAAGGCGCGAATTAGGTTTAAGGTTGGAGTTTGGAAGTCGGGGCATCGGACGCTTCGAATTCGGTGTTCGCCCGTGATTGTCTACTTGTCTAAAGACAAGGAATTCAAGAGGACTGCTTGCTTTACTGAAGTCTAA

mRNA sequence

ATGGCGGGTCCTCCACAGCTATCTTCACGACCCGCCCGCCCGAACATATTGCGCTACGTCATATTGGTCCTAGTAGCACTAATTGTATTGGTTGGTCTCGTCGTGCTCATCATTTGGTTGACTGTTAGGCCGAAACGATTAAGCTACACGGTGGAAAGCGCTGCGGTCCATAACTTTGACATGAGCACTACTCAGCTTAATGCTTCCTTCAATTTCGGAGTGAAAGCTTACAATCCCAATAGACATGTCTCGGTTTATTATGATCATGTCACTGTTACGGTTGGGTTCGGCGATCAAGATTTGGCGTTTGGTGTGATTAAGCCCTTCTACCAACCTCACAAAGATGTGACATGGTTGAACATGGACCTTAATGCTAAAAACTTTTTGTTGCACGACTCCGTGTCGAAGGATCTAGCGCTCGAAAAGGCAGCGGGAGAGATGGATTTGGATCTTTGGATCAAGGCGCGAATTAGGTTTAAGGTTGGAGTTTGGAAGTCGGGGCATCGGACGCTTCGAATTCGGTGTTCGCCCGTGATTGTCTACTTGTCTAAAGACAAGGAATTCAAGAGGACTGCTTGCTTTACTGAAGTCTAA

Coding sequence (CDS)

ATGGCGGGTCCTCCACAGCTATCTTCACGACCCGCCCGCCCGAACATATTGCGCTACGTCATATTGGTCCTAGTAGCACTAATTGTATTGGTTGGTCTCGTCGTGCTCATCATTTGGTTGACTGTTAGGCCGAAACGATTAAGCTACACGGTGGAAAGCGCTGCGGTCCATAACTTTGACATGAGCACTACTCAGCTTAATGCTTCCTTCAATTTCGGAGTGAAAGCTTACAATCCCAATAGACATGTCTCGGTTTATTATGATCATGTCACTGTTACGGTTGGGTTCGGCGATCAAGATTTGGCGTTTGGTGTGATTAAGCCCTTCTACCAACCTCACAAAGATGTGACATGGTTGAACATGGACCTTAATGCTAAAAACTTTTTGTTGCACGACTCCGTGTCGAAGGATCTAGCGCTCGAAAAGGCAGCGGGAGAGATGGATTTGGATCTTTGGATCAAGGCGCGAATTAGGTTTAAGGTTGGAGTTTGGAAGTCGGGGCATCGGACGCTTCGAATTCGGTGTTCGCCCGTGATTGTCTACTTGTCTAAAGACAAGGAATTCAAGAGGACTGCTTGCTTTACTGAAGTCTAA

Homology

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BLAST of CmoCh12G008210 vs. Swiss-Prot
Match: Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.9e-27
Identity = 69/189 (36.51%), Postives = 115/189 (60.85%), Query Frame = 1


Query: 13  RPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMSTTQ--LNASF 72
           R N +  +I+ LV L +LVGL +LI +LT+RPKRL YTVE+A+V  F +      +NA F
Sbjct: 33  RMNPVLCIIVALVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKF 92

Query: 73  NFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLNMDLNAKNFLL 132
           ++ +K+YNP +HVSV Y  + ++    +Q +A   I PF Q  K+ T +   L + N  L
Sbjct: 93  SYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVAL 152

Query: 133 HDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLSKDK--EF 192
               ++DL  EK+ G ++++++I AR+ +K  +++S  RTL+  C+PV++ ++      F
Sbjct: 153 SKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSSSLDGF 212

Query: 193 KRTACFTEV 198
           +R  C T +
Sbjct: 213 QRVLCKTRL 221

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BLAST of CmoCh12G008210 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-14
Identity = 61/188 (32.45%), Postives = 93/188 (49.47%), Query Frame = 1


Query: 16  ILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMSTT---QLNASFNF 75
           IL  +  +L+ + VL+G+  LIIWL  RP  + + V  A +  F +  T   + N   NF
Sbjct: 44  ILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNF 103

Query: 76  GVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGV---IKPFYQPHKDVTWLNMDLNAKNFL 135
            ++  NPNR + VYYD + V   +GDQ   FG+   I  FYQ HK+ T +   L  +  +
Sbjct: 104 TIR--NPNRRIGVYYDEIEVRGYYGDQ--RFGMSNNISKFYQGHKNTTVVGTKLVGQQLV 163

Query: 136 LHD-SVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLSKDKE- 194
           L D    KDL  +  +    +D  ++ +IRFK G+ KS     +I+C   +   S     
Sbjct: 164 LLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSG 223

[Close]

BLAST of CmoCh12G008210 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 47/171 (27.49%), Postives = 91/171 (53.22%), Query Frame = 1


Query: 16  ILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMSTTQLNASFNFG-- 75
           +L   + V+++LIV++G+  LI WL VRP+ + + V  A++  FD ++      +N    
Sbjct: 37  LLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALT 96

Query: 76  VKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLNMDLNAKNFLLHDS 135
           V   NPN+ + +YYD +     +  +  +   + PFYQ HK+ T L      +N ++ ++
Sbjct: 97  VPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNA 156

Query: 136 -VSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLS 184
             S+ L  E+ +G  ++++  + R+RFK+G  K      ++ C  + + LS
Sbjct: 157 GQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLS 207

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BLAST of CmoCh12G008210 vs. TrEMBL
Match: A0A0A0LVK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132720 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 5.0e-85
Identity = 158/197 (80.20%), Postives = 175/197 (88.83%), Query Frame = 1


Query: 1   MAGPPQLSSRPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFD 60
           MAGPPQ  SR     ILR+VI+ LVALI+LVGL VLIIWLTVRPKRLSYTVESA VHNFD
Sbjct: 1   MAGPPQPLSRSGPSRILRFVIIFLVALIILVGLAVLIIWLTVRPKRLSYTVESAEVHNFD 60

Query: 61  MSTTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLN 120
           M+ TQLNASF+FGV+AYNPN+ VSVYYD +T TVGFGDQDL+FGV+ PFYQPHK+  WLN
Sbjct: 61  MTDTQLNASFSFGVRAYNPNKRVSVYYDSITATVGFGDQDLSFGVLSPFYQPHKNEQWLN 120

Query: 121 MDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIV 180
           + LNA+NFLLHDSVSK+LALE++AGEMDLDLWIKARIRFKVGVWKS HRTLRIRCSPVIV
Sbjct: 121 IHLNAQNFLLHDSVSKELALERSAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 180

Query: 181 YLSKDKEFKRTACFTEV 198
           YLSK K FK+T CFTEV
Sbjct: 181 YLSKSKTFKKTTCFTEV 197

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BLAST of CmoCh12G008210 vs. TrEMBL
Match: W9S3V4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011767 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.0e-53
Identity = 104/194 (53.61%), Postives = 147/194 (75.77%), Query Frame = 1


Query: 5   PQLSSRPAR-PNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMST 64
           P   + P R P+ILR++ +  +ALIVLVG+ VL+IWL VRPKRL Y+VE A++HNF+++ 
Sbjct: 18  PTREANPQRKPHILRWIAMFFLALIVLVGIAVLVIWLVVRPKRLVYSVEDASIHNFNINN 77

Query: 65  TQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLNMDL 124
             LNASF+F V++YNPN  VS+YYD +   V + DQ LA+ +++PF+QPHK+VT L + L
Sbjct: 78  NHLNASFDFVVRSYNPNSKVSIYYDKIESRVEYDDQTLAYNMVEPFFQPHKNVTRLELKL 137

Query: 125 NAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLS 184
            A++  L  S+  DL LEK++GE++L++W+KARIRFKVG WKS HRTL+I CSPV+V+ S
Sbjct: 138 AAQSVPLVGSIPADLRLEKSSGEIELNVWLKARIRFKVGAWKSSHRTLKIFCSPVLVHFS 197

Query: 185 KDKEFKRTACFTEV 198
           + K F+RT C  E+
Sbjct: 198 RSKNFERTVCDVEL 211

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BLAST of CmoCh12G008210 vs. TrEMBL
Match: K7M1R4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G248600 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.6e-53
Identity = 105/203 (51.72%), Postives = 152/203 (74.88%), Query Frame = 1


Query: 1   MAGPPQLS-----SRPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAA 60
           MA PP  S     ++P R N+LR + + ++ALI+LVG+ V+IIWL ++PKRL YTVE+AA
Sbjct: 1   MAHPPTQSQSRAANKPKRSNLLRCIAIFILALIILVGIAVIIIWLVLKPKRLEYTVENAA 60

Query: 61  VHNFDMS-TTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHK 120
           +HNF+++    L A+F+F +++YNPN  VS+YYD V V+V + DQ LA   ++PF+Q HK
Sbjct: 61  IHNFNLTDANHLYANFDFTIRSYNPNSRVSIYYDTVEVSVRYEDQTLATNAVQPFFQSHK 120

Query: 121 DVTWLNMDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIR 180
           +VT L++ L A+   L+DSV KDL LE+++G+++LD+W++ARIRFKVGVWKS HR L+I 
Sbjct: 121 NVTRLHVGLTAQTVALYDSVPKDLRLERSSGDIELDVWMRARIRFKVGVWKSKHRVLKIF 180

Query: 181 CSPVIVYLSKDKEFKRTACFTEV 198
           CSPV+V+ SK K F+R  C  E+
Sbjct: 181 CSPVLVHFSKGKSFERAPCDVEL 203

[Close]

BLAST of CmoCh12G008210 vs. TrEMBL
Match: A0A0R4J5D0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G065400 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.6e-53
Identity = 103/203 (50.74%), Postives = 152/203 (74.88%), Query Frame = 1


Query: 1   MAGPPQLSS-----RPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAA 60
           MA PP  S+     +P R N+L Y+ + +VALI+LVG+ V+IIWL ++PKRL Y+VE+AA
Sbjct: 1   MAHPPSQSNSTAANKPKRSNLLHYIAMFIVALIILVGIAVIIIWLVLKPKRLEYSVENAA 60

Query: 61  VHNFDMS-TTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHK 120
           +HNF+++    L A+F+F +++YNPN  +S+YYD V V+V + DQ LA   ++PF+Q HK
Sbjct: 61  IHNFNLTDANHLYANFDFTIRSYNPNSRISIYYDTVEVSVRYEDQTLATNAVQPFFQSHK 120

Query: 121 DVTWLNMDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIR 180
           +VT L++ L A++  L++SV KDL LE+++G+++LD+W++ARIRFKVG WKS HR LRI 
Sbjct: 121 NVTRLHVALTAQSVALYESVPKDLRLERSSGDIELDVWVRARIRFKVGAWKSRHRVLRIF 180

Query: 181 CSPVIVYLSKDKEFKRTACFTEV 198
           CSPV+V+ SK K F+R  C  E+
Sbjct: 181 CSPVLVHFSKGKSFERAPCEVEL 203

[Close]

BLAST of CmoCh12G008210 vs. TrEMBL
Match: V7BQJ9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G194400g PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.6e-51
Identity = 98/194 (50.52%), Postives = 147/194 (75.77%), Query Frame = 1


Query: 5   PQLSSRPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMS-T 64
           P    +P R N+LRY+ +V++ALI++VG+ V+I+WL V+P++L Y+VE+AA+HNF+++  
Sbjct: 8   PAQGEKPKRSNLLRYIAMVILALIIIVGIAVIIVWLVVKPEKLEYSVENAAIHNFNLTDA 67

Query: 65  TQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLNMDL 124
             L A+F+F V++YNPN  VS+YYD V V+V + DQ LA   ++PF+Q HK+VT L++ L
Sbjct: 68  NHLYANFDFTVRSYNPNSRVSIYYDSVEVSVRYEDQTLATNAVQPFFQSHKNVTRLHVGL 127

Query: 125 NAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLS 184
            A+   L++SV KDL LEK++G+++LD+ ++ARIRFKVG WKS HR LR+ CSPV+V+ S
Sbjct: 128 TAQTVALYESVPKDLKLEKSSGDIELDVLVRARIRFKVGSWKSKHRVLRVFCSPVLVHFS 187

Query: 185 KDKEFKRTACFTEV 198
           K K F+R  C  E+
Sbjct: 188 KAKSFERVPCEVEL 201

[Close]

BLAST of CmoCh12G008210 vs. TAIR10
Match: AT5G22870.1 (AT5G22870.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-39
Identity = 75/186 (40.32%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 13  RPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMST-TQLNASFN 72
           RP+++ Y+ LV++ LI +  +  LI WL  +PK+L YTVE+A+V NF+++    ++A+F 
Sbjct: 22  RPSLICYIFLVILTLIFMAAVGFLITWLETKPKKLRYTVENASVQNFNLTNDNHMSATFQ 81

Query: 73  FGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLNMDLNAKNFLLH 132
           F ++++NPN  +SVYY  V + V F DQ LAF  ++PF+QP  +V  ++  L A+N  + 
Sbjct: 82  FTIQSHNPNHRISVYYSSVEIFVKFKDQTLAFDTVEPFHQPRMNVKQIDETLIAENVAVS 141

Query: 133 DSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLSKDKEFKRT 192
            S  KDL  + + G++  ++++KAR+RFKVG+WKS HRT +I+CS V V LS+  + + +
Sbjct: 142 KSNGKDLRSQNSLGKIGFEVFVKARVRFKVGIWKSSHRTAKIKCSHVTVSLSQPNKSQNS 201

Query: 193 ACFTEV 198
           +C  ++
Sbjct: 202 SCDADI 207

[Close]

BLAST of CmoCh12G008210 vs. TAIR10
Match: AT1G08160.1 (AT1G08160.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 121.7 bits (304), Expect = 5.0e-28
Identity = 69/189 (36.51%), Postives = 115/189 (60.85%), Query Frame = 1


Query: 13  RPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMSTTQ--LNASF 72
           R N +  +I+ LV L +LVGL +LI +LT+RPKRL YTVE+A+V  F +      +NA F
Sbjct: 33  RMNPVLCIIVALVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKF 92

Query: 73  NFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLNMDLNAKNFLL 132
           ++ +K+YNP +HVSV Y  + ++    +Q +A   I PF Q  K+ T +   L + N  L
Sbjct: 93  SYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVAL 152

Query: 133 HDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLSKDK--EF 192
               ++DL  EK+ G ++++++I AR+ +K  +++S  RTL+  C+PV++ ++      F
Sbjct: 153 SKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSSSLDGF 212

Query: 193 KRTACFTEV 198
           +R  C T +
Sbjct: 213 QRVLCKTRL 221

[Close]

BLAST of CmoCh12G008210 vs. TAIR10
Match: AT5G53730.1 (AT5G53730.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-16
Identity = 37/153 (24.18%), Postives = 83/153 (54.25%), Query Frame = 1


Query: 33  LVVLIIWLTVRPKRLSYTVESAAVHNFDMSTTQ---LNASFNFGVKAYNPNRHVSVYYDH 92
           L++ ++WL + P+R  +++  A +++ +++T+    LN+S    + + NPN+ V +YYD 
Sbjct: 40  LIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDK 99

Query: 93  VTVTVGF-GDQDLAFGVIKPFYQPHKDVTWLNMDLNAKNFLLHDSVSKDLALEKAAGEMD 152
           + V   + G Q  +   + PFYQ H+++  L   L      +  S    ++ E++ G++ 
Sbjct: 100 LLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKII 159

Query: 153 LDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVY 182
           + + +  ++R+K+G W SG     + C  ++ +
Sbjct: 160 IGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAF 192

[Close]

BLAST of CmoCh12G008210 vs. TAIR10
Match: AT5G06320.1 (AT5G06320.1 NDR1/HIN1-like 3)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-16
Identity = 61/188 (32.45%), Postives = 93/188 (49.47%), Query Frame = 1


Query: 16  ILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMSTT---QLNASFNF 75
           IL  +  +L+ + VL+G+  LIIWL  RP  + + V  A +  F +  T   + N   NF
Sbjct: 44  ILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNF 103

Query: 76  GVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGV---IKPFYQPHKDVTWLNMDLNAKNFL 135
            ++  NPNR + VYYD + V   +GDQ   FG+   I  FYQ HK+ T +   L  +  +
Sbjct: 104 TIR--NPNRRIGVYYDEIEVRGYYGDQ--RFGMSNNISKFYQGHKNTTVVGTKLVGQQLV 163

Query: 136 LHD-SVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLSKDKE- 194
           L D    KDL  +  +    +D  ++ +IRFK G+ KS     +I+C   +   S     
Sbjct: 164 LLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSG 223

[Close]

BLAST of CmoCh12G008210 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 80.9 bits (198), Expect = 9.8e-16
Identity = 47/171 (27.49%), Postives = 91/171 (53.22%), Query Frame = 1


Query: 16  ILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMSTTQLNASFNFG-- 75
           +L   + V+++LIV++G+  LI WL VRP+ + + V  A++  FD ++      +N    
Sbjct: 37  LLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALT 96

Query: 76  VKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLNMDLNAKNFLLHDS 135
           V   NPN+ + +YYD +     +  +  +   + PFYQ HK+ T L      +N ++ ++
Sbjct: 97  VPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNA 156

Query: 136 -VSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLS 184
             S+ L  E+ +G  ++++  + R+RFK+G  K      ++ C  + + LS
Sbjct: 157 GQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLS 207

[Close]

BLAST of CmoCh12G008210 vs. NCBI nr
Match: gi|659072246|ref|XP_008464346.1| (PREDICTED: uncharacterized protein At1g08160 [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 2.2e-86
Identity = 160/197 (81.22%), Postives = 175/197 (88.83%), Query Frame = 1


Query: 1   MAGPPQLSSRPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFD 60
           MAGPPQ  SR     ILR+VI+ LVALI+LVGL VLIIWLT+RPKRLSYTVESA VHNFD
Sbjct: 1   MAGPPQPPSRAGPSRILRFVIIFLVALIILVGLAVLIIWLTIRPKRLSYTVESAEVHNFD 60

Query: 61  MSTTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLN 120
           M+ TQLNASF+FGV+AYNPN+ VSVYYD +T TVGFGDQDLAFGV+ PFYQPHKD  WLN
Sbjct: 61  MTNTQLNASFSFGVRAYNPNKRVSVYYDSITATVGFGDQDLAFGVLSPFYQPHKDEQWLN 120

Query: 121 MDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIV 180
           + LNA+NFLLHDSVSKDLALE++AGEMDLDLWIKARIRFKVGVWKS HRTLRIRCSPVIV
Sbjct: 121 IHLNAQNFLLHDSVSKDLALERSAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 180

Query: 181 YLSKDKEFKRTACFTEV 198
           YLSK K FK+T CFTEV
Sbjct: 181 YLSKSKTFKKTTCFTEV 197

[Close]

BLAST of CmoCh12G008210 vs. NCBI nr
Match: gi|778659278|ref|XP_011654115.1| (PREDICTED: uncharacterized protein At1g08160 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 7.2e-85
Identity = 158/197 (80.20%), Postives = 175/197 (88.83%), Query Frame = 1


Query: 1   MAGPPQLSSRPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFD 60
           MAGPPQ  SR     ILR+VI+ LVALI+LVGL VLIIWLTVRPKRLSYTVESA VHNFD
Sbjct: 1   MAGPPQPLSRSGPSRILRFVIIFLVALIILVGLAVLIIWLTVRPKRLSYTVESAEVHNFD 60

Query: 61  MSTTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLN 120
           M+ TQLNASF+FGV+AYNPN+ VSVYYD +T TVGFGDQDL+FGV+ PFYQPHK+  WLN
Sbjct: 61  MTDTQLNASFSFGVRAYNPNKRVSVYYDSITATVGFGDQDLSFGVLSPFYQPHKNEQWLN 120

Query: 121 MDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIV 180
           + LNA+NFLLHDSVSK+LALE++AGEMDLDLWIKARIRFKVGVWKS HRTLRIRCSPVIV
Sbjct: 121 IHLNAQNFLLHDSVSKELALERSAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 180

Query: 181 YLSKDKEFKRTACFTEV 198
           YLSK K FK+T CFTEV
Sbjct: 181 YLSKSKTFKKTTCFTEV 197

[Close]

BLAST of CmoCh12G008210 vs. NCBI nr
Match: gi|703150687|ref|XP_010109925.1| (hypothetical protein L484_011767 [Morus notabilis])

HSP 1 Score: 218.0 bits (554), Expect = 1.5e-53
Identity = 104/194 (53.61%), Postives = 147/194 (75.77%), Query Frame = 1


Query: 5   PQLSSRPAR-PNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFDMST 64
           P   + P R P+ILR++ +  +ALIVLVG+ VL+IWL VRPKRL Y+VE A++HNF+++ 
Sbjct: 18  PTREANPQRKPHILRWIAMFFLALIVLVGIAVLVIWLVVRPKRLVYSVEDASIHNFNINN 77

Query: 65  TQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLNMDL 124
             LNASF+F V++YNPN  VS+YYD +   V + DQ LA+ +++PF+QPHK+VT L + L
Sbjct: 78  NHLNASFDFVVRSYNPNSKVSIYYDKIESRVEYDDQTLAYNMVEPFFQPHKNVTRLELKL 137

Query: 125 NAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIVYLS 184
            A++  L  S+  DL LEK++GE++L++W+KARIRFKVG WKS HRTL+I CSPV+V+ S
Sbjct: 138 AAQSVPLVGSIPADLRLEKSSGEIELNVWLKARIRFKVGAWKSSHRTLKIFCSPVLVHFS 197

Query: 185 KDKEFKRTACFTEV 198
           + K F+RT C  E+
Sbjct: 198 RSKNFERTVCDVEL 211

[Close]

BLAST of CmoCh12G008210 vs. NCBI nr
Match: gi|356554941|ref|XP_003545799.1| (PREDICTED: uncharacterized protein At1g08160 [Glycine max])

HSP 1 Score: 215.3 bits (547), Expect = 9.5e-53
Identity = 103/203 (50.74%), Postives = 152/203 (74.88%), Query Frame = 1


Query: 1   MAGPPQLSS-----RPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAA 60
           MA PP  S+     +P R N+L Y+ + +VALI+LVG+ V+IIWL ++PKRL Y+VE+AA
Sbjct: 1   MAHPPSQSNSTAANKPKRSNLLHYIAMFIVALIILVGIAVIIIWLVLKPKRLEYSVENAA 60

Query: 61  VHNFDMS-TTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHK 120
           +HNF+++    L A+F+F +++YNPN  +S+YYD V V+V + DQ LA   ++PF+Q HK
Sbjct: 61  IHNFNLTDANHLYANFDFTIRSYNPNSRISIYYDTVEVSVRYEDQTLATNAVQPFFQSHK 120

Query: 121 DVTWLNMDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIR 180
           +VT L++ L A++  L++SV KDL LE+++G+++LD+W++ARIRFKVG WKS HR LRI 
Sbjct: 121 NVTRLHVALTAQSVALYESVPKDLRLERSSGDIELDVWVRARIRFKVGAWKSRHRVLRIF 180

Query: 181 CSPVIVYLSKDKEFKRTACFTEV 198
           CSPV+V+ SK K F+R  C  E+
Sbjct: 181 CSPVLVHFSKGKSFERAPCEVEL 203

[Close]

BLAST of CmoCh12G008210 vs. NCBI nr
Match: gi|356546690|ref|XP_003541756.1| (PREDICTED: uncharacterized protein At1g08160-like [Glycine max])

HSP 1 Score: 215.3 bits (547), Expect = 9.5e-53
Identity = 105/203 (51.72%), Postives = 152/203 (74.88%), Query Frame = 1


Query: 1   MAGPPQLS-----SRPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAA 60
           MA PP  S     ++P R N+LR + + ++ALI+LVG+ V+IIWL ++PKRL YTVE+AA
Sbjct: 1   MAHPPTQSQSRAANKPKRSNLLRCIAIFILALIILVGIAVIIIWLVLKPKRLEYTVENAA 60

Query: 61  VHNFDMS-TTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHK 120
           +HNF+++    L A+F+F +++YNPN  VS+YYD V V+V + DQ LA   ++PF+Q HK
Sbjct: 61  IHNFNLTDANHLYANFDFTIRSYNPNSRVSIYYDTVEVSVRYEDQTLATNAVQPFFQSHK 120

Query: 121 DVTWLNMDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIR 180
           +VT L++ L A+   L+DSV KDL LE+++G+++LD+W++ARIRFKVGVWKS HR L+I 
Sbjct: 121 NVTRLHVGLTAQTVALYDSVPKDLRLERSSGDIELDVWMRARIRFKVGVWKSKHRVLKIF 180

Query: 181 CSPVIVYLSKDKEFKRTACFTEV 198
           CSPV+V+ SK K F+R  C  E+
Sbjct: 181 CSPVLVHFSKGKSFERAPCDVEL 203

The following BLAST results are available for this feature:

BLAST of CmoCh12G008210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1816_ARATH	8.9e-27	36.51	Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1	[more]
NHL3_ARATH	1.0e-14	32.45	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]
YLS9_ARATH	1.7e-14	27.49	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]

BLAST of CmoCh12G008210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVK3_CUCSA	5.0e-85	80.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132720 PE=4 SV=1	[more]
W9S3V4_9ROSA	1.0e-53	53.61	Uncharacterized protein OS=Morus notabilis GN=L484_011767 PE=4 SV=1	[more]
K7M1R4_SOYBN	6.6e-53	51.72	Uncharacterized protein OS=Glycine max GN=GLYMA_13G248600 PE=4 SV=1	[more]
A0A0R4J5D0_SOYBN	6.6e-53	50.74	Uncharacterized protein OS=Glycine max GN=GLYMA_15G065400 PE=4 SV=1	[more]
V7BQJ9_PHAVU	3.6e-51	50.52	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G194400g PE=4 SV=1	[more]

BLAST of CmoCh12G008210 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22870.1	3.7e-39	40.32	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G08160.1	5.0e-28	36.51	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G53730.1	2.6e-16	24.18	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06320.1	5.8e-16	32.45	NDR1/HIN1-like 3	[more]
AT2G35980.1	9.8e-16	27.49	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of CmoCh12G008210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072246\|ref\|XP_008464346.1\|	2.2e-86	81.22	PREDICTED: uncharacterized protein At1g08160 [Cucumis melo]	[more]
gi\|778659278\|ref\|XP_011654115.1\|	7.2e-85	80.20	PREDICTED: uncharacterized protein At1g08160 [Cucumis sativus]	[more]
gi\|703150687\|ref\|XP_010109925.1\|	1.5e-53	53.61	hypothetical protein L484_011767 [Morus notabilis]	[more]
gi\|356554941\|ref\|XP_003545799.1\|	9.5e-53	50.74	PREDICTED: uncharacterized protein At1g08160 [Glycine max]	[more]
gi\|356546690\|ref\|XP_003541756.1\|	9.5e-53	51.72	PREDICTED: uncharacterized protein At1g08160-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008210.1	CmoCh12G008210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 74..175 score: 8.0
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 5..193 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G008210	Cucsa.200350	Cucumber (Gy14) v1	cgycmoB0593
CmoCh12G008210	CmaCh12G008120	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G008210	Csa1G132720	Cucumber (Chinese Long) v2	cmocuB148
CmoCh12G008210	MELO3C004861	Melon (DHL92) v3.5.1	cmomeB138
CmoCh12G008210	ClCG01G013910	Watermelon (Charleston Gray)	cmowcgB142
CmoCh12G008210	CSPI01G13990	Wild cucumber (PI 183967)	cmocpiB148
CmoCh12G008210	Lsi03G000600	Bottle gourd (USVL1VR-Ls)	cmolsiB158
CmoCh12G008210	Cp4.1LG07g06700	Cucurbita pepo (Zucchini)	cmocpeB179
CmoCh12G008210	MELO3C004861.2	Melon (DHL92) v3.6.1	cmomedB151
CmoCh12G008210	CsaV3_1G014170	Cucumber (Chinese Long) v3	cmocucB0172
CmoCh12G008210	Cla97C01G012880	Watermelon (97103) v2	cmowmbB149
CmoCh12G008210	Bhi08G000122	Wax gourd	cmowgoB0214

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G008210	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh12G008210	Cucurbita maxima (Rimu)	cmacmoB217
CmoCh12G008210	Watermelon (97103) v1	cmowmB151
CmoCh12G008210	Cucurbita pepo (Zucchini)	cmocpeB165
CmoCh12G008210	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G008210	Cucumber (Gy14) v2	cgybcmoB054
CmoCh12G008210	Silver-seed gourd	carcmoB0233