CmoCh12G006760 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G006760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCell division topological specificity factor-like protein
LocationCmo_Chr12 : 4535120 .. 4538094 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGACAGCGTTTGATACGTTAAAATCAATACCGGTGCTCCTTACCCTGCACAGAAGCTCTTGAGAGAGGTTTCTGTGCGCTCCAAGACAACGGCGCCCAGCAGAAGGCCGAGGGGGAACGAACGAACACACAGCACTCGACGGAGCATTGCACAGCTCTTAACGCTAATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCGCACCCTCTTCGGACTTCTTTTCGCTCTTCAAAGGTCCCTAACTTCTCCTCTTTTCATCTCTCTATATTTTCTTCCAATTCTTCTGTTATTTGTTCCTTCGGTTGCCTAAGCGTTGGAAATTTTGTGTAAATGTGGAATTTGGTGCCTGGAAGATATGAATTCTGAGTTTCGGTGTAAATTGTTTGTTTTGCTCATGCGGCATTTATGAATTGGAGGTTGTGTTAACGCTATCTCTGCAGTTTGGATTTTTTGCTTTACTACAATTATTTTTCAGATTAGTGAACTGTATTCGAGAATTCTAGGGTTCTATGTGAATTTGTAGCATTTTTTTTTTTTTTTTTTTGCTTCATTTTACCCGACAATCCCTTGTAGCGCGCATGGATTAGACTTAATGACCTAATTGACACAAAGGCCTTGATTCCAATGGTTCTATATCATTGCAGAATGAGTCTCTCGTAGCCCACAACAATAGGATTCTCAAAGATTAACCTCCTTGAGAACTTTATAACATAAAATGTAGTCTACTAGAGTATGTCTTGGGATAGATGAAACCTCCTTGCATGTTTTTGGTAAGAAATCTTGCAGATATAGCCAAAAACGACCTGGTTCGCATAGAAACGACCCTTTCTTCTGTTTTGTCAAGTTTAAACCTGGGGCTAGTAACAAAATTCGATTTTGGGAGGATATCTGGATCGATTTGACTTCTTTACAGCAGTTTTTTTTTTCTTTTTTCCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTATGCTGTCTCAACAATTAAAAAAAAGGGTTGTCCCCGTAGCAGACAAAATTTCAGTCGAAATACTTGAATATTAACCTTCCCCACAACAATGTCGAAAAGTATTGACTGTGACTCAAATTTTTGTGGAGTTGTGATGGTCAATCACGGAACCTGGGAGCTAGGAGACGATGTTTTGATAGAGAGTTTAGCAGCTGGTTATCCTTCCCGGAGAAGATTAATTTAGTTTATTTAGAATAAGTCTACTAGGCTGTTCTTTTATGCCTTCTTTATTGAATATATTCCTCGTGTTCTTATAAAAAAAATCCTGGGAACATGCACAACTTGCCAGACCCACCTTGTAAAAATTAGATTTTGGGTAGAGTGAAGAATGTGATGTAACATAATCCAGATTATTTCTTAGCATGCAGCGATAATGGACTACTTTTCACTAGACTGACTAAATCACAGTGCACGCTATTTAGTATTTCTGGCTGTTCTGACGATTGTGAGATAGTTACACACAAGTCAATTAGTTGTGAAAACAGATCATTTCTATTTCAGCATCTTTCATTTTTCGAATGTAAATATTTGATAGGTTTACACTGAATCAAAAGGATAATCGTAGAGAGACAAGCCTAAAGAAAAATCTATGAGTTCAGCTTCTCTCCCAACTCGAACTCCCGAGTCCAAAACTGTCACCCTTCTGTCTTCGCTTTCCCAAAATACTCCTTTGATTCTCACCTCATCCTGACACAGTAACGAAGTCGGTTACTTGGAGCTCACTAATATTTATGTTATTTCTACACTAATGGATTCCCCTCCTTCCCTTCCTGCTATAGATGTAGACTATCTGGAACCAGAAAGACCACCCTTACAGATCATGTATTGACCGACACGTTCTTTCACTGAATCGAATAATTAACTCATTGGTAGTTTTGCTGCATTTGGATTTTTTCTCTGGAAACAATTGCATATATGCCCTGTTGCTTATTGTATGTGCTTCATCCTAGGTTGAATTCTCTGGTTTTTCAAGGGGAGGGCCTTGCATTCAGGAAGTTGCACTAAAATGGCGCAACATGGCAATTGATAGTCGTAATAGGCGTGGCGTTTCTCATATAACTACTGGAAGCTCAGGAAGTTATGAACTGTCGTCAAAGACATCGAGCCAAGAAGCTGAAACCTTCCTTATGAATGCCATAAACATGAACTTCTTTGAGCGTTTAAACTTGGCTTGGAGAATTTTATTTCCAACTCCAGCATCTAAGAGAAACTCCAACGCACTGATCGCCAAGCAGCGACTAAAGATGATCCTGTTTGCTGACCGATGCGCTGTTAGTGACGAGGCTAAACGGAAGATTGTTAGCAACATAGTGCGAGCTCTATCAGATTTCGTAGAAATTGAATCGAAGGATAAAGTTGAGTTGAGCATGTCAGCAGATGCTGATCTTGGAACCATTTATTCTGTGACAGTACCTGTGAGGAGGGTGAAAAAAGAATATCAAGAAGAAGACGAGAGTGGAACGATAACGAACATAGAATACAAAGATAAGGGAGAGACATCTGGTTCGGTCGACGTGAGGTTTGATTTCTTCATTCCAGATTGAAAAAAGAACATCAAAAGCTGTCCTATTGTTGAAATGGATAAAGAATTTGTATTTGAAGAGTGGCAGTAACCAAAGGTTTCTTCTTCTGTACATAAATTGTGTATTGATTTCTATCAAATTGAGATTGTAGGTTGGATTTAGTCCTTTTACCGCAAAGGGCTTTTGTTTTGCTGTGGTTATTTATGCGTAGTTGTGTTATCTGTTTTCATATGCACCACGTTTGATCTGGAT

mRNA sequence

AAACGACAGCGTTTGATACGTTAAAATCAATACCGGTGCTCCTTACCCTGCACAGAAGCTCTTGAGAGAGGTTTCTGTGCGCTCCAAGACAACGGCGCCCAGCAGAAGGCCGAGGGGGAACGAACGAACACACAGCACTCGACGGAGCATTGCACAGCTCTTAACGCTAATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCGCACCCTCTTCGGACTTCTTTTCGCTCTTCAAAGGTTGAATTCTCTGGTTTTTCAAGGGGAGGGCCTTGCATTCAGGAAGTTGCACTAAAATGGCGCAACATGGCAATTGATAGTCGTAATAGGCGTGGCGTTTCTCATATAACTACTGGAAGCTCAGGAAGTTATGAACTGTCGTCAAAGACATCGAGCCAAGAAGCTGAAACCTTCCTTATGAATGCCATAAACATGAACTTCTTTGAGCGTTTAAACTTGGCTTGGAGAATTTTATTTCCAACTCCAGCATCTAAGAGAAACTCCAACGCACTGATCGCCAAGCAGCGACTAAAGATGATCCTGTTTGCTGACCGATGCGCTGTTAGTGACGAGGCTAAACGGAAGATTGTTAGCAACATAGTGCGAGCTCTATCAGATTTCGTAGAAATTGAATCGAAGGATAAAGTTGAGTTGAGCATGTCAGCAGATGCTGATCTTGGAACCATTTATTCTGTGACAGTACCTGTGAGGAGGGTGAAAAAAGAATATCAAGAAGAAGACGAGAGTGGAACGATAACGAACATAGAATACAAAGATAAGGGAGAGACATCTGGTTCGGTCGACGTGAGGTTTGATTTCTTCATTCCAGATTGAAAAAAGAACATCAAAAGCTGTCCTATTGTTGAAATGGATAAAGAATTTGTATTTGAAGAGTGGCAGTAACCAAAGGTTTCTTCTTCTGTACATAAATTGTGTATTGATTTCTATCAAATTGAGATTGTAGGTTGGATTTAGTCCTTTTACCGCAAAGGGCTTTTGTTTTGCTGTGGTTATTTATGCGTAGTTGTGTTATCTGTTTTCATATGCACCACGTTTGATCTGGAT

Coding sequence (CDS)

ATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCGCACCCTCTTCGGACTTCTTTTCGCTCTTCAAAGGTTGAATTCTCTGGTTTTTCAAGGGGAGGGCCTTGCATTCAGGAAGTTGCACTAAAATGGCGCAACATGGCAATTGATAGTCGTAATAGGCGTGGCGTTTCTCATATAACTACTGGAAGCTCAGGAAGTTATGAACTGTCGTCAAAGACATCGAGCCAAGAAGCTGAAACCTTCCTTATGAATGCCATAAACATGAACTTCTTTGAGCGTTTAAACTTGGCTTGGAGAATTTTATTTCCAACTCCAGCATCTAAGAGAAACTCCAACGCACTGATCGCCAAGCAGCGACTAAAGATGATCCTGTTTGCTGACCGATGCGCTGTTAGTGACGAGGCTAAACGGAAGATTGTTAGCAACATAGTGCGAGCTCTATCAGATTTCGTAGAAATTGAATCGAAGGATAAAGTTGAGTTGAGCATGTCAGCAGATGCTGATCTTGGAACCATTTATTCTGTGACAGTACCTGTGAGGAGGGTGAAAAAAGAATATCAAGAAGAAGACGAGAGTGGAACGATAACGAACATAGAATACAAAGATAAGGGAGAGACATCTGGTTCGGTCGACGTGAGGTTTGATTTCTTCATTCCAGATTGA
Homology
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BLAST of CmoCh12G006760 vs. Swiss-Prot
Match: MINE1_ARATH (Cell division topological specificity factor homolog, chloroplastic OS=Arabidopsis thaliana GN=MINE1 PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.0e-68
Identity = 141/227 (62.11%), Postives = 171/227 (75.33%), Query Frame = 1 

Query: 4   SGDLRVSATLCS--HHPHPLRTSF--RSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNR 63
           SG LR+SATL S  HH H  R S    SSKV+F+GF   G    E       +AI   N 
Sbjct: 5   SGTLRISATLVSPYHHHHRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAISRENT 64

Query: 64  RGVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA 123
           RG   +   ++G YELS   + QE E+FL NAINM FF+RLNLAW+I+FP+ AS+R+SNA
Sbjct: 65  RGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRRSSNA 124

Query: 124 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY 183
            IAKQRLKMILF+DRC VSDEAKRKIV+NI+ ALSDFVEIES++KV+L++S D DLGTIY
Sbjct: 125 RIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDLGTIY 184

Query: 184 SVTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           SVTVPVRRVK EYQ+ DE+GTITN+EYKD  +  GSVDVRFDF++P+
Sbjct: 185 SVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

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BLAST of CmoCh12G006760 vs. TrEMBL
Match: A0A0A0KQJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469010 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 8.3e-108
Identity = 206/226 (91.15%), Postives = 212/226 (93.81%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHH HPLR SF SSKVEFSGFS GGP   EVALKWRN AIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDSRNRR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G+S ITTGSS S+ELSSKTSSQEAETFL+NAINMNFFERLNLAWRILFP+PASKRNSNAL
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKV+LSMS D+DLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQE DESGTITNIEYKD GETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

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BLAST of CmoCh12G006760 vs. TrEMBL
Match: A0A061EHN6_THECC (Bacterial MinE 1 isoform 1 OS=Theobroma cacao GN=TCM_011619 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 9.5e-80
Identity = 156/227 (68.72%), Postives = 187/227 (82.38%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPH-PLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNR 60
           MA+SG+LRV+ATL S+H H P R+S  SSKV+F G  +GG    E++LKW  + I+SR+ 
Sbjct: 1   MAISGNLRVAATLSSYHQHHPFRSSILSSKVDFMGSMKGGSSFSEISLKWNGITINSRDI 60

Query: 61  RGVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA 120
           RG +    G  G ++LS+   + E E+FL+NAINM+FFERLNLAW+I+FP+PASKR+SNA
Sbjct: 61  RGQTKRLAGIMGDFKLSTNAVNHEVESFLLNAINMSFFERLNLAWKIVFPSPASKRSSNA 120

Query: 121 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY 180
            IAKQRLKMILF+DRCAVSDEAK+KIV NIVRALSDFVEIESKDKV LS+S D+DLGTIY
Sbjct: 121 NIAKQRLKMILFSDRCAVSDEAKQKIVKNIVRALSDFVEIESKDKVHLSVSTDSDLGTIY 180

Query: 181 SVTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           SVTVPVRRVK EYQ  DE+GTI NIEYKD GE SGSVDVRFDF++PD
Sbjct: 181 SVTVPVRRVKAEYQVADEAGTIRNIEYKDTGERSGSVDVRFDFYVPD 227

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BLAST of CmoCh12G006760 vs. TrEMBL
Match: M5XG81_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011116mg PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-79
Identity = 156/226 (69.03%), Postives = 190/226 (84.07%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAV GDLRVSATL SH  H LR+S  +SKV+F+ FS  G  I ++ALKW +M+ D   RR
Sbjct: 1   MAVFGDLRVSATLASHTTHSLRSSLPNSKVDFASFSNRGSSISDIALKWPSMSFD---RR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
            +   +   SG ++LSSK+SSQ++E+FL+NAINM+F +RLNLAW+I+FP+P ++R+SNA 
Sbjct: 61  SIRQHSKRLSGDFQLSSKSSSQDSESFLLNAINMSFLDRLNLAWKIMFPSPTTRRSSNAN 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILF+DRCAVSDEAKR IV+NIV ALSDFVEIES+DKV+LS+SAD D+GTIYS
Sbjct: 121 IAKQRLKMILFSDRCAVSDEAKRMIVNNIVHALSDFVEIESRDKVQLSVSADTDVGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQ  DE+GTITNIEYKD GE+SGSVDV+FDFFIPD
Sbjct: 181 VTVPVRRVKPEYQIGDETGTITNIEYKDTGESSGSVDVKFDFFIPD 223

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BLAST of CmoCh12G006760 vs. TrEMBL
Match: A0A0D2T2C7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G178200 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.7e-79
Identity = 153/226 (67.70%), Postives = 182/226 (80.53%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MA+ G+LRV ATL S+H HP RT  RSSKVEF GF  GG    E+  KW  M I+SR+  
Sbjct: 1   MAIYGNLRVDATLASYHQHPFRTYIRSSKVEFVGFMNGGSRFSEITPKWNGMTINSRSFG 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
             +  + G  G Y+ S     +E E+FL++AINM+FFERL+LAW+I+FP+PAS+R+SNA 
Sbjct: 61  SKNKRSVGIMGDYKFSPNAVHEEVESFLLHAINMSFFERLHLAWKIVFPSPASRRSSNAN 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILF+DRCAVSDEAK+KIV NIV ALSDFVEIESKDKV+LS+S D+DLGTIYS
Sbjct: 121 IAKQRLKMILFSDRCAVSDEAKQKIVKNIVHALSDFVEIESKDKVQLSVSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQE DE+GTITNI+YKD GE SGSVDVRFDF++PD
Sbjct: 181 VTVPVRRVKAEYQEADETGTITNIDYKDTGERSGSVDVRFDFYVPD 226

[Close]
BLAST of CmoCh12G006760 vs. TrEMBL
Match: A0A0B0NF22_GOSAR (Cell division topological specificity factor, chloroplastic-like protein OS=Gossypium arboreum GN=F383_12845 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-78
Identity = 153/226 (67.70%), Postives = 181/226 (80.09%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MA+ G+LRV ATL SHH HP RT  RSSKVE  GF  GG    E+  KW  + I+SR+  
Sbjct: 1   MAIYGNLRVDATLASHHQHPFRTYIRSSKVECVGFMNGGSRFSEITPKWNGVTINSRSIG 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
             +  + G  G Y+ S     +E E+FL++AINM+FFERL+LAW+I+FP+PAS+R+SNA 
Sbjct: 61  SKNKRSVGIMGDYKFSPNAVHEEVESFLLHAINMSFFERLHLAWKIVFPSPASRRSSNAN 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILF+DRCAVSDEAK+KIV NIV ALSDFVEIESKDKV+LS+S D+DLGTIYS
Sbjct: 121 IAKQRLKMILFSDRCAVSDEAKQKIVKNIVHALSDFVEIESKDKVQLSVSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQE DESGTITNI+YKD GE SGSVDVRFDF++PD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIDYKDTGERSGSVDVRFDFYVPD 226

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BLAST of CmoCh12G006760 vs. TAIR10
Match: AT1G69390.1 (AT1G69390.1 homologue of bacterial MinE 1)

HSP 1 Score: 258.5 bits (659), Expect = 4.0e-69
Identity = 141/227 (62.11%), Postives = 171/227 (75.33%), Query Frame = 1 

Query: 4   SGDLRVSATLCS--HHPHPLRTSF--RSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNR 63
           SG LR+SATL S  HH H  R S    SSKV+F+GF   G    E       +AI   N 
Sbjct: 5   SGTLRISATLVSPYHHHHRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAISRENT 64

Query: 64  RGVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA 123
           RG   +   ++G YELS   + QE E+FL NAINM FF+RLNLAW+I+FP+ AS+R+SNA
Sbjct: 65  RGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRRSSNA 124

Query: 124 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY 183
            IAKQRLKMILF+DRC VSDEAKRKIV+NI+ ALSDFVEIES++KV+L++S D DLGTIY
Sbjct: 125 RIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDLGTIY 184

Query: 184 SVTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           SVTVPVRRVK EYQ+ DE+GTITN+EYKD  +  GSVDVRFDF++P+
Sbjct: 185 SVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

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BLAST of CmoCh12G006760 vs. NCBI nr
Match: gi|449452056|ref|XP_004143776.1| (PREDICTED: cell division topological specificity factor homolog, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 1.2e-107
Identity = 206/226 (91.15%), Postives = 212/226 (93.81%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHH HPLR SF SSKVEFSGFS GGP   EVALKWRN AIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDSRNRR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G+S ITTGSS S+ELSSKTSSQEAETFL+NAINMNFFERLNLAWRILFP+PASKRNSNAL
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKV+LSMS D+DLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQE DESGTITNIEYKD GETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

[Close]
BLAST of CmoCh12G006760 vs. NCBI nr
Match: gi|659131559|ref|XP_008465747.1| (PREDICTED: cell division topological specificity factor homolog, chloroplastic-like [Cucumis melo])

HSP 1 Score: 396.0 bits (1016), Expect = 4.5e-107
Identity = 205/226 (90.71%), Postives = 211/226 (93.36%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHH HPLR SF SSKVEFSGFS GGP   EVALKWRN AID RNRR
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDRRNRR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G+S ITTGSS S+ELSSKTSSQEAETFL+NAINMNFFERLNLAWRILFP+PASKRNSNAL
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKV+LSMS D+DLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQE DESGTITNIEYKD GETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

[Close]
BLAST of CmoCh12G006760 vs. NCBI nr
Match: gi|645229635|ref|XP_008221552.1| (PREDICTED: cell division topological specificity factor homolog, chloroplastic-like [Prunus mume])

HSP 1 Score: 307.0 bits (785), Expect = 2.7e-80
Identity = 157/226 (69.47%), Postives = 191/226 (84.51%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAV GDLRVSATL SH  H LR+S  +SKV+F+ FS GG  I ++ALKW +M+ D   RR
Sbjct: 1   MAVFGDLRVSATLASHTTHSLRSSLPNSKVDFASFSNGGSSISDIALKWPSMSFD---RR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
            +   +   SG ++LSSK+SSQ++E+FL+NAINM+F +RLNLAW+I+FP+P ++R+SNA 
Sbjct: 61  SIRQHSKRLSGDFQLSSKSSSQDSESFLLNAINMSFLDRLNLAWKIMFPSPTTRRSSNAN 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILF+DRCAVSDEAKR IV+NIV ALSDFVEIES+DKV+LS+SAD D+GTIYS
Sbjct: 121 IAKQRLKMILFSDRCAVSDEAKRMIVNNIVHALSDFVEIESRDKVQLSVSADTDVGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQ  DE+GTITNIEYKD GE+SGSVDV+FDFFIPD
Sbjct: 181 VTVPVRRVKPEYQIGDETGTITNIEYKDTGESSGSVDVKFDFFIPD 223

[Close]
BLAST of CmoCh12G006760 vs. NCBI nr
Match: gi|590699597|ref|XP_007045967.1| (Bacterial MinE 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 304.7 bits (779), Expect = 1.4e-79
Identity = 156/227 (68.72%), Postives = 187/227 (82.38%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPH-PLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNR 60
           MA+SG+LRV+ATL S+H H P R+S  SSKV+F G  +GG    E++LKW  + I+SR+ 
Sbjct: 1   MAISGNLRVAATLSSYHQHHPFRSSILSSKVDFMGSMKGGSSFSEISLKWNGITINSRDI 60

Query: 61  RGVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA 120
           RG +    G  G ++LS+   + E E+FL+NAINM+FFERLNLAW+I+FP+PASKR+SNA
Sbjct: 61  RGQTKRLAGIMGDFKLSTNAVNHEVESFLLNAINMSFFERLNLAWKIVFPSPASKRSSNA 120

Query: 121 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY 180
            IAKQRLKMILF+DRCAVSDEAK+KIV NIVRALSDFVEIESKDKV LS+S D+DLGTIY
Sbjct: 121 NIAKQRLKMILFSDRCAVSDEAKQKIVKNIVRALSDFVEIESKDKVHLSVSTDSDLGTIY 180

Query: 181 SVTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           SVTVPVRRVK EYQ  DE+GTI NIEYKD GE SGSVDVRFDF++PD
Sbjct: 181 SVTVPVRRVKAEYQVADEAGTIRNIEYKDTGERSGSVDVRFDFYVPD 227

[Close]
BLAST of CmoCh12G006760 vs. NCBI nr
Match: gi|596217574|ref|XP_007223943.1| (hypothetical protein PRUPE_ppa011116mg [Prunus persica])

HSP 1 Score: 303.9 bits (777), Expect = 2.3e-79
Identity = 156/226 (69.03%), Postives = 190/226 (84.07%), Query Frame = 1 

Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAV GDLRVSATL SH  H LR+S  +SKV+F+ FS  G  I ++ALKW +M+ D   RR
Sbjct: 1   MAVFGDLRVSATLASHTTHSLRSSLPNSKVDFASFSNRGSSISDIALKWPSMSFD---RR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
            +   +   SG ++LSSK+SSQ++E+FL+NAINM+F +RLNLAW+I+FP+P ++R+SNA 
Sbjct: 61  SIRQHSKRLSGDFQLSSKSSSQDSESFLLNAINMSFLDRLNLAWKIMFPSPTTRRSSNAN 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILF+DRCAVSDEAKR IV+NIV ALSDFVEIES+DKV+LS+SAD D+GTIYS
Sbjct: 121 IAKQRLKMILFSDRCAVSDEAKRMIVNNIVHALSDFVEIESRDKVQLSVSADTDVGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQ  DE+GTITNIEYKD GE+SGSVDV+FDFFIPD
Sbjct: 181 VTVPVRRVKPEYQIGDETGTITNIEYKDTGESSGSVDVKFDFFIPD 223

The following BLAST results are available for this feature:
BLAST of CmoCh12G006760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MINE1_ARATH7.0e-6862.11Cell division topological specificity factor homolog, chloroplastic OS=Arabidops... [more]
BLAST of CmoCh12G006760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQJ9_CUCSA8.3e-10891.15Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469010 PE=4 SV=1[more]
A0A061EHN6_THECC9.5e-8068.72Bacterial MinE 1 isoform 1 OS=Theobroma cacao GN=TCM_011619 PE=4 SV=1[more]
M5XG81_PRUPE1.6e-7969.03Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011116mg PE=4 SV=1[more]
A0A0D2T2C7_GOSRA4.7e-7967.70Uncharacterized protein OS=Gossypium raimondii GN=B456_008G178200 PE=4 SV=1[more]
A0A0B0NF22_GOSAR1.1e-7867.70Cell division topological specificity factor, chloroplastic-like protein OS=Goss... [more]
BLAST of CmoCh12G006760 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G69390.14.0e-6962.11 homologue of bacterial MinE 1[more]
BLAST of CmoCh12G006760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452056|ref|XP_004143776.1|1.2e-10791.15PREDICTED: cell division topological specificity factor homolog, chloroplastic-l... [more]
gi|659131559|ref|XP_008465747.1|4.5e-10790.71PREDICTED: cell division topological specificity factor homolog, chloroplastic-l... [more]
gi|645229635|ref|XP_008221552.1|2.7e-8069.47PREDICTED: cell division topological specificity factor homolog, chloroplastic-l... [more]
gi|590699597|ref|XP_007045967.1|1.4e-7968.72Bacterial MinE 1 isoform 1 [Theobroma cacao][more]
gi|596217574|ref|XP_007223943.1|2.3e-7969.03hypothetical protein PRUPE_ppa011116mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005527MinE
Vocabulary: Biological Process
TermDefinition
GO:0032955regulation of barrier septum assembly
GO:0051301cell division
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010020 chloroplast fission
biological_process GO:0032955 regulation of barrier septum assembly
biological_process GO:0051301 cell division
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0051117 ATPase binding
molecular_function GO:0042802 identical protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G006760.1CmoCh12G006760.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005527Septum formation topological specificity factor MinEPFAMPF03776MinEcoord: 121..186
score: 5.0
NoneNo IPR availablePANTHERPTHR33404FAMILY NOT NAMEDcoord: 18..226
score: 5.5
NoneNo IPR availablePANTHERPTHR33404:SF2CELL DIVISION TOPOLOGICAL SPECIFICITY FACTOR HOMOLOG, CHLOROPLASTICcoord: 18..226
score: 5.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G006760Cucsa.033780Cucumber (Gy14) v1cgycmoB0013
CmoCh12G006760CmaCh12G007360Cucurbita maxima (Rimu)cmacmoB178
CmoCh12G006760CmaCh05G008950Cucurbita maxima (Rimu)cmacmoB771
CmoCh12G006760Cla005564Watermelon (97103) v1cmowmB133
CmoCh12G006760Csa5G469010Cucumber (Chinese Long) v2cmocuB172
CmoCh12G006760MELO3C002974Melon (DHL92) v3.5.1cmomeB136
CmoCh12G006760ClCG09G021950Watermelon (Charleston Gray)cmowcgB127
CmoCh12G006760CSPI05G16160Wild cucumber (PI 183967)cmocpiB175
CmoCh12G006760Lsi02G017630Bottle gourd (USVL1VR-Ls)cmolsiB156
CmoCh12G006760Cp4.1LG07g06410Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G006760MELO3C002974.2Melon (DHL92) v3.6.1cmomedB149
CmoCh12G006760CsaV3_5G025150Cucumber (Chinese Long) v3cmocucB0205
CmoCh12G006760Cla97C09G183420Watermelon (97103) v2cmowmbB189
CmoCh12G006760Bhi06G000717Wax gourdcmowgoB0173
CmoCh12G006760CsGy5G015850Cucumber (Gy14) v2cgybcmoB562
CmoCh12G006760Carg26230Silver-seed gourdcarcmoB0437
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh12G006760CmoCh05G009020Cucurbita moschata (Rifu)cmocmoB157
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G006760Cucumber (Chinese Long) v3cmocucB0204
CmoCh12G006760Wild cucumber (PI 183967)cmocpiB174
CmoCh12G006760Cucumber (Chinese Long) v2cmocuB171
CmoCh12G006760Melon (DHL92) v3.5.1cmomeB135
CmoCh12G006760Cucumber (Gy14) v2cgybcmoB561
CmoCh12G006760Melon (DHL92) v3.6.1cmomedB148