Carg26230 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26230
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cell division topological specificity factor homolog, chloroplastic-like
Location	Cucurbita_argyrosperma_scaffold_307 : 143898 .. 146689 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAAGACAACGGCGCCCAGCAGAAGGCCGAGGGGGAACGAACGAACACACAGCACTCGACGGAGCATTGCACAGCTCTTAACGCTAATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCGCACCCTCTTCGGACTTCTTTTCGCTCTTCAAAGGTCCCTAACTTCTCCTCTTTTCATCTCTCTATATTTTCTTCCAATTCTTCTGTTATTTGTTCCTTCGGTTGCCTAAGCGTTGGAAATTTTGTGTAAATGTGGAATTTGGTGCCTGGAAGATATGAATTCTGAGTTTCGGTGTAAATTGTTTGTTTTGCTCATGCGGCATTTATGAATTGGAGGTTGTGTTAACGCTATCTCTGCAGTTTGGATTTTTTGCTTTACTACAATTATTTTTCAGATTAGTGAACTGTATTCGAGAATTCTAGGGTTCTATGTGAATTTGTAGCAATTTTTTTATTTTTTTTTGCTTCATTTTACCCGACAATCCCTTGTAGCGCGCATGGATTAGACTTAATGACCTAATTGACACAAAGGCCTTGATTCCAATGGTTCTATATCATTGCAGAATGAGTCTCTCGTAGTCCACAACAATAGGATTCTCAAAGATTAACCTCATTGAGAACTTTATAACATAAAATGTAGTCTATTAGAGTATGTCTTGGGATAGATGAAACCTCCTTGCATGTTTTTGGTAAGAAATCTTGCAGATATAGCCAAAAACGACCTGGTTCGCATAGAAACGACCCTTTCTTCTGTTTTGTCAAGTTTAAACCTGGGGCTAGTAACAAAATTCGATTTTGGGAGGATATCTGGATCGATTTGACTTCTTTACAGCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTATGCTGTCTCAACAATTAAAAAAAAGGGTTGTCCCCGTAGCAGACAAAATTTCAGTCGAAATACTTGAATATTAACCTTCCCCACAACAATGTCGAAAAGTATTGACTGTGACTCAAATTTTTCTGGAGTTGTGATGGTCAATCACGGAACCTGGGAGCTAGGAGACGATGTTTTGATAGAGAGTTTAGCAGCTGGTTATCCTTCCCGGAGAAGATTAATTTAGTTTATTTAGAACAAGTCTACTAGGCTGTTCTTTTATGCCTTCTTTATTGAATATATTCCTCGTGTTCTTATAAAAAAAATCCTGGGAACATGCACAACTTGCCAGACCCACCTTGTAAAAATTAGATTTTGGGTAGAGTGAAGAATGTGATGTAACATAATCCAGATTATTTCTTATCATGCAGCGATAATGGACTACTTTTCACTAGACTGACTAAATCACAGTGCACGCTATTTAGTATTTCTGGCTGTTCTGACGATTGTGAGATAGTTACACACAAGTCAATTAGTTGTGAAAACAGATCATTTCTATTTCAGCATCTTTCATTTTTCGAATGTAAATATTTGATAGGTTTACACTGAATCAAAAGGATAATCGTAGAGAGACAAGCCTAAATAAAAATCTATGAGTTCAGCTTCTCTCCCAACTCGAACTCCCGAGTCCAAAACTGTCACCCTTCTGTCTTCGCTTTCCCAAAATACTCCTTTGATTCTCACCTCATCCTGACACAGTAACGAAGTCGGTTACTTGGAGATCACTAATATTTATGTTATTTCTACACTAATGGATTCCCCTCCTTCCCTTCCTGCTATAGATGTAGACTATCTGGAACCAGAAAGACCACCCTTACAGATCATGTATTGACCGACACGTTCTTTCACTGAATCGAATAATTAATTCATTGGTAGTTTTGCTGCATTTGGATTTTTTCTCTGGAAACAATTGCATATATGCCCTGTTGCTTATTGTATGTGCTTCATCCTAGGTTGAATTCTCTGGTTTTTCAAGGGGAGGGCCTTGCATTCAGGAAGTTGCACTAAAATGGCGCAACATGGCAATTGATAGTCGTAATAGGCGTGGCGTTTCTCATATAACTACTGGAAGCTCAGGAAGTTATGAACTGTCGTCAAAGACATCGAGCCAAGAAGCTGAAACCTTCCTTATGAATGCCATAAACATGAACTTCTTTGAGCGTTTAAACTTGGCTTGGAGAATTTTATTTCCAACTCCAGCATCTAAGAGAAACTCCAACGCACTGATCGCCAAGCAGCGACTAAAGATGATCCTGTTTGCTGACCGATGCGCTGTTAGCGACGAGGCTAAACGGAAGATTGTTAGCAACATAGTGCGAGCTCTATCAGATTTCGTAGAAATTGAATCAAAGGATAAAGTTGAGTTGAGCATGTCAGCAGATGCTGATCTTGGAACCATTTATTCTGTGACAGTACCTGTGAGGAGGGTGAAAAAAGAATATCAAGAAGAAGACGAGAGTGGAACGATAACGAACATAGAATACAAAGATAAGGGAGAGACATCTGGTTCGGTCGACGTGAGGTTTGATTTCTTCATTCCAGATTGAAAAAAGAACATCAAAAGCTGTCCTATTGTTGAAATGGATAAAGAATTTGTATTTGAAGAGTGGCGGTAACCAAAGGTTTCTTCTTCTGTACATAAATTGTGTATTGATTTCTATCAAATTGAGATTGTAGGTTGGATTTAGTCCTTTTACCGCAAAGGGCTTTTGTTTTGCTGTGGTTATTTATGCGTAGTTGTGTTATCTGTTTTCCTATGCACCACGTTTGATCTGGATTTCATTGGTCTTTCTAATACAGGTTCGTTCATATATATATATATACACACATGCATATACATACATGTGTGCGTGACTGTTTGAATT

mRNA sequence

TCCAAGACAACGGCGCCCAGCAGAAGGCCGAGGGGGAACGAACGAACACACAGCACTCGACGGAGCATTGCACAGCTCTTAACGCTAATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCGCACCCTCTTCGGACTTCTTTTCGCTCTTCAAAGGTTGAATTCTCTGGTTTTTCAAGGGGAGGGCCTTGCATTCAGGAAGTTGCACTAAAATGGCGCAACATGGCAATTGATAGTCGTAATAGGCGTGGCGTTTCTCATATAACTACTGGAAGCTCAGGAAGTTATGAACTGTCGTCAAAGACATCGAGCCAAGAAGCTGAAACCTTCCTTATGAATGCCATAAACATGAACTTCTTTGAGCGTTTAAACTTGGCTTGGAGAATTTTATTTCCAACTCCAGCATCTAAGAGAAACTCCAACGCACTGATCGCCAAGCAGCGACTAAAGATGATCCTGTTTGCTGACCGATGCGCTGTTAGCGACGAGGCTAAACGGAAGATTGTTAGCAACATAGTGCGAGCTCTATCAGATTTCGTAGAAATTGAATCAAAGGATAAAGTTGAGTTGAGCATGTCAGCAGATGCTGATCTTGGAACCATTTATTCTGTGACAGTACCTGTGAGGAGGGTGAAAAAAGAATATCAAGAAGAAGACGAGAGTGGAACGATAACGAACATAGAATACAAAGATAAGGGAGAGACATCTGGTTCGGTCGACGTGAGGTTTGATTTCTTCATTCCAGATTGAAAAAAGAACATCAAAAGCTGTCCTATTGTTGAAATGGATAAAGAATTTGTATTTGAAGAGTGGCGGTAACCAAAGGTTTCTTCTTCTGTACATAAATTGTGTATTGATTTCTATCAAATTGAGATTGTAGGTTGGATTTAGTCCTTTTACCGCAAAGGGCTTTTGTTTTGCTGTGGTTATTTATGCGTAGTTGTGTTATCTGTTTTCCTATGCACCACGTTTGATCTGGATTTCATTGGTCTTTCTAATACAGGTTCGTTCATATATATATATATACACACATGCATATACATACATGTGTGCGTGACTGTTTGAATT

Coding sequence (CDS)

ATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCGCACCCTCTTCGGACTTCTTTTCGCTCTTCAAAGGTTGAATTCTCTGGTTTTTCAAGGGGAGGGCCTTGCATTCAGGAAGTTGCACTAAAATGGCGCAACATGGCAATTGATAGTCGTAATAGGCGTGGCGTTTCTCATATAACTACTGGAAGCTCAGGAAGTTATGAACTGTCGTCAAAGACATCGAGCCAAGAAGCTGAAACCTTCCTTATGAATGCCATAAACATGAACTTCTTTGAGCGTTTAAACTTGGCTTGGAGAATTTTATTTCCAACTCCAGCATCTAAGAGAAACTCCAACGCACTGATCGCCAAGCAGCGACTAAAGATGATCCTGTTTGCTGACCGATGCGCTGTTAGCGACGAGGCTAAACGGAAGATTGTTAGCAACATAGTGCGAGCTCTATCAGATTTCGTAGAAATTGAATCAAAGGATAAAGTTGAGTTGAGCATGTCAGCAGATGCTGATCTTGGAACCATTTATTCTGTGACAGTACCTGTGAGGAGGGTGAAAAAAGAATATCAAGAAGAAGACGAGAGTGGAACGATAACGAACATAGAATACAAAGATAAGGGAGAGACATCTGGTTCGGTCGACGTGAGGTTTGATTTCTTCATTCCAGATTGA

Protein sequence

MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRRGVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNALIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYSVTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD

Homology

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BLAST of Carg26230 vs. NCBI nr
Match: XP_022952002.1 (cell division topological specificity factor homolog, chloroplastic [Cucurbita moschata])

HSP 1 Score: 440.7 bits (1132), Expect = 3.1e-120
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL
Sbjct: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 226

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BLAST of Carg26230 vs. NCBI nr
Match: XP_022973268.1 (cell division topological specificity factor homolog, chloroplastic [Cucurbita maxima])

HSP 1 Score: 439.1 bits (1128), Expect = 9.0e-120
Identity = 225/226 (99.56%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHHPHPLR+SFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHPHPLRSSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL
Sbjct: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 226

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BLAST of Carg26230 vs. NCBI nr
Match: XP_023538501.1 (cell division topological specificity factor homolog, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 433.0 bits (1112), Expect = 6.5e-118
Identity = 224/227 (98.68%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHHPHPLRT FRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHPHPLRTPFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60

Query: 61  GVSHITTGSSGSYELSSK-TSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA 120
           GVSHITTGSSGSYELSSK TSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA
Sbjct: 61  GVSHITTGSSGSYELSSKTTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA 120

Query: 121 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY 180
           LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY
Sbjct: 121 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY 180

Query: 181 SVTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           SVTVPVRRVK+EYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD
Sbjct: 181 SVTVPVRRVKREYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227

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BLAST of Carg26230 vs. NCBI nr
Match: XP_022158361.1 (cell division topological specificity factor homolog, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 402.5 bits (1033), Expect = 9.3e-109
Identity = 207/226 (91.59%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDL VSATLCSHHP PLRTSF SSKVEFSGFS GGP   EV LKW NMAIDSRN+R
Sbjct: 1   MAVSGDLGVSATLCSHHPQPLRTSFPSSKVEFSGFSSGGPSSHEVVLKWHNMAIDSRNKR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           GVS ITTGSSGSYELSSKTSSQEAETFL+NAINMNFFERLNLAWRILFPTPASKRNSNAL
Sbjct: 61  GVSQITTGSSGSYELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKV+LSMS D+DLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           +TVPVRRVK EYQE DESGTITNIEYKDKGETSGSVDVRFDFFIP+
Sbjct: 181 ITVPVRRVKAEYQEADESGTITNIEYKDKGETSGSVDVRFDFFIPE 226

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BLAST of Carg26230 vs. NCBI nr
Match: XP_004143776.1 (PREDICTED: cell division topological specificity factor homolog, chloroplastic-like [Cucumis sativus] >KGN51159.1 hypothetical protein Csa_5G469010 [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 2.3e-107
Identity = 206/226 (91.15%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHH HPLR SF SSKVEFSGFS GGP   EVALKWRN AIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDSRNRR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G+S ITTGSS S+ELSSKTSSQEAETFL+NAINMNFFERLNLAWRILFP+PASKRNSNAL
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKV+LSMS D+DLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQE DESGTITNIEYKD GETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

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BLAST of Carg26230 vs. TAIR10
Match: AT1G69390.1 (homologue of bacterial MinE 1)

HSP 1 Score: 256.1 bits (653), Expect = 2.0e-68
Identity = 138/227 (60.79%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 4   SGDLRVSATLCSHHPHPLRTSF----RSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNR 63
           SG LR+SATL S + H  R        SSKV+F+GF   G    E       +AI   N 
Sbjct: 5   SGTLRISATLVSPYHHXXRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAISRENT 64

Query: 64  RGVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA 123
           RG   +   ++G YELS   + QE E+FL NAINM FF+RLNLAW+I+FP+ AS+R+SNA
Sbjct: 65  RGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRRSSNA 124

Query: 124 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY 183
            IAKQRLKMILF+DRC VSDEAKRKIV+NI+ ALSDFVEIES++KV+L++S D DLGTIY
Sbjct: 125 RIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDLGTIY 184

Query: 184 SVTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           SVTVPVRRVK EYQ+ DE+GTITN+EYKD  +  GSVDVRFDF++P+
Sbjct: 185 SVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

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BLAST of Carg26230 vs. Swiss-Prot
Match: sp|Q9C4Z7|MINE1_ARATH (Cell division topological specificity factor homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MINE1 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.5e-67
Identity = 138/227 (60.79%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 4   SGDLRVSATLCSHHPHPLRTSF----RSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNR 63
           SG LR+SATL S + H  R        SSKV+F+GF   G    E       +AI   N 
Sbjct: 5   SGTLRISATLVSPYHHXXRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAISRENT 64

Query: 64  RGVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNA 123
           RG   +   ++G YELS   + QE E+FL NAINM FF+RLNLAW+I+FP+ AS+R+SNA
Sbjct: 65  RGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRRSSNA 124

Query: 124 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIY 183
            IAKQRLKMILF+DRC VSDEAKRKIV+NI+ ALSDFVEIES++KV+L++S D DLGTIY
Sbjct: 125 RIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDLGTIY 184

Query: 184 SVTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           SVTVPVRRVK EYQ+ DE+GTITN+EYKD  +  GSVDVRFDF++P+
Sbjct: 185 SVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

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BLAST of Carg26230 vs. Swiss-Prot
Match: sp|A7FXV6|MINE_CLOB1 (Cell division topological specificity factor OS=Clostridium botulinum (strain ATCC 19397 / Type A) OX=441770 GN=minE PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.5e-04
Identity = 23/80 (28.75%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 115 RNSNALIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADAD 174
           + S+  +AK+RLK+IL  DR ++S +    I  ++++ +S ++EI+++D V++ MS+  +
Sbjct: 9   KQSSKDVAKERLKLILIQDRNSISPDVLESIREDMLKVISKYIEIDNED-VDIKMSSVEE 68

Query: 175 ---LGTIYSVTVPVRRVKKE 192
              +      ++P++R+KK+
Sbjct: 69  IEGMSPALIASIPIKRIKKK 87

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BLAST of Carg26230 vs. Swiss-Prot
Match: sp|C3L3K3|MINE_CLOB6 (Cell division topological specificity factor OS=Clostridium botulinum (strain 657 / Type Ba4) OX=515621 GN=minE PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.5e-04
Identity = 23/80 (28.75%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 115 RNSNALIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADAD 174
           + S+  +AK+RLK+IL  DR ++S +    I  ++++ +S ++EI+++D V++ MS+  +
Sbjct: 9   KQSSKDVAKERLKLILIQDRNSISPDVLESIREDMLKVISKYIEIDNED-VDIKMSSVEE 68

Query: 175 ---LGTIYSVTVPVRRVKKE 192
              +      ++P++R+KK+
Sbjct: 69  IEGMSPALIASIPIKRIKKK 87

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BLAST of Carg26230 vs. Swiss-Prot
Match: sp|A5I676|MINE_CLOBH (Cell division topological specificity factor OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) OX=441771 GN=minE PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.5e-04
Identity = 23/80 (28.75%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 115 RNSNALIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADAD 174
           + S+  +AK+RLK+IL  DR ++S +    I  ++++ +S ++EI+++D V++ MS+  +
Sbjct: 9   KQSSKDVAKERLKLILIQDRNSISPDVLESIREDMLKVISKYIEIDNED-VDIKMSSVEE 68

Query: 175 ---LGTIYSVTVPVRRVKKE 192
              +      ++P++R+KK+
Sbjct: 69  IEGMSPALIASIPIKRIKKK 87

[Close]

BLAST of Carg26230 vs. Swiss-Prot
Match: sp|C1FVX5|MINE_CLOBJ (Cell division topological specificity factor OS=Clostridium botulinum (strain Kyoto / Type A2) OX=536232 GN=minE PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.5e-04
Identity = 23/80 (28.75%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 115 RNSNALIAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADAD 174
           + S+  +AK+RLK+IL  DR ++S +    I  ++++ +S ++EI+++D V++ MS+  +
Sbjct: 9   KQSSKDVAKERLKLILIQDRNSISPDVLESIREDMLKVISKYIEIDNED-VDIKMSSVEE 68

Query: 175 ---LGTIYSVTVPVRRVKKE 192
              +      ++P++R+KK+
Sbjct: 69  IEGMSPALIASIPIKRIKKK 87

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BLAST of Carg26230 vs. TrEMBL
Match: tr|A0A0A0KQJ9|A0A0A0KQJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G469010 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.5e-107
Identity = 206/226 (91.15%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHH HPLR SF SSKVEFSGFS GGP   EVALKWRN AIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDSRNRR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G+S ITTGSS S+ELSSKTSSQEAETFL+NAINMNFFERLNLAWRILFP+PASKRNSNAL
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKV+LSMS D+DLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQE DESGTITNIEYKD GETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

[Close]

BLAST of Carg26230 vs. TrEMBL
Match: tr|A0A1S3CPL3|A0A1S3CPL3_CUCME (cell division topological specificity factor homolog, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103503356 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 5.8e-107
Identity = 205/226 (90.71%), Postives = 211/226 (93.36%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MAVSGDLRVSATLCSHH HPLR SF SSKVEFSGFS GGP   EVALKWRN AID RNRR
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDRRNRR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G+S ITTGSS S+ELSSKTSSQEAETFL+NAINMNFFERLNLAWRILFP+PASKRNSNAL
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKV+LSMS D+DLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQE DESGTITNIEYKD GETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

[Close]

BLAST of Carg26230 vs. TrEMBL
Match: tr|A0A2P4M3X8|A0A2P4M3X8_QUESU (Cell division topological specificity factor like, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_76771 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 3.4e-83
Identity = 160/226 (70.80%), Postives = 191/226 (84.51%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MA+ GDLRVSATL S+H HPLR+S R SKVEFSGF  GG  I ++  KW +M +D+ N R
Sbjct: 1   MAICGDLRVSATLGSYHAHPLRSSLRPSKVEFSGFLNGGSSISDITSKWPSMVLDNHNMR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G S      +G Y+LS K+ SQ AE+FL++AINM+F ERLNLAW+I+FP+P S++NSNA 
Sbjct: 61  GHSKQIPHVTGDYKLSPKSISQAAESFLLDAINMSFLERLNLAWKIVFPSPTSRKNSNAR 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILF+DRCAVSDEAK+KIV NIV++LSDFVEIES+DKV+LS+S D+DLGTIYS
Sbjct: 121 IAKQRLKMILFSDRCAVSDEAKQKIVKNIVQSLSDFVEIESRDKVQLSVSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQ+ DE+GTITNIEYKD G+TSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKPEYQDLDEAGTITNIEYKDTGDTSGSVDVRFDFFIPD 226

[Close]

BLAST of Carg26230 vs. TrEMBL
Match: tr|A0A2I4DJ30|A0A2I4DJ30_9ROSI (cell division topological specificity factor homolog, chloroplastic-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108980629 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 6.4e-82
Identity = 163/226 (72.12%), Postives = 190/226 (84.07%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           M +SGDL VSATL S+  HPLR+S R SKVEFSGF   G  I EV  KW ++ +D+RN R
Sbjct: 1   MMISGDLNVSATLGSYPMHPLRSSLRPSKVEFSGFLNRGSSICEVIPKWPSIVLDNRNMR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G     +G +G Y+LS K+ SQE+E FL++AINM+F ERLNLAW+I+FP+PAS+++SNA 
Sbjct: 61  GHPKEISGVTGDYKLSPKSISQESEGFLLDAINMSFLERLNLAWKIMFPSPASRKSSNAR 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILF+DRCAVSDEAKRKIV+NIV+ALSDFVEIES+DKV LS+S DADLGTIYS
Sbjct: 121 IAKQRLKMILFSDRCAVSDEAKRKIVNNIVQALSDFVEIESQDKVHLSVSTDADLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQ+ DE GTITNIEYKD GETSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKPEYQDLDEVGTITNIEYKDTGETSGSVDVRFDFFIPD 226

[Close]

BLAST of Carg26230 vs. TrEMBL
Match: tr|A0A2P4HFN8|A0A2P4HFN8_QUESU (Cell division topological specificity factor like, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_26648 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 6.4e-82
Identity = 159/226 (70.35%), Postives = 190/226 (84.07%), Query Frame = 0


Query: 1   MAVSGDLRVSATLCSHHPHPLRTSFRSSKVEFSGFSRGGPCIQEVALKWRNMAIDSRNRR 60
           MA+ GDLRVSATL S+H  PLR+S R SKVEFSGF  GG  I ++  KW +M +D+ N R
Sbjct: 1   MAICGDLRVSATLGSYHALPLRSSLRPSKVEFSGFLNGGSSISDITSKWPSMVLDNHNMR 60

Query: 61  GVSHITTGSSGSYELSSKTSSQEAETFLMNAINMNFFERLNLAWRILFPTPASKRNSNAL 120
           G S      +G Y+LS K+ SQ AE+FL++AINM+F ERLNLAW+I+FP+P S++NSNA 
Sbjct: 61  GHSKQIPHVTGDYKLSPKSISQAAESFLLDAINMSFLERLNLAWKIVFPSPTSRKNSNAR 120

Query: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVELSMSADADLGTIYS 180
           IAKQRLKMILF+DRCAVSDEAK+KIV NIV++LSDFVEIES+DKV+LS+S D+DLGTIYS
Sbjct: 121 IAKQRLKMILFSDRCAVSDEAKQKIVKNIVQSLSDFVEIESRDKVQLSVSTDSDLGTIYS 180

Query: 181 VTVPVRRVKKEYQEEDESGTITNIEYKDKGETSGSVDVRFDFFIPD 227
           VTVPVRRVK EYQ+ DE+GTITNIEYKD G+TSGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKPEYQDLDEAGTITNIEYKDTGDTSGSVDVRFDFFIPD 226

The following BLAST results are available for this feature:

BLAST of Carg26230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952002.1	3.1e-120	100.00	cell division topological specificity factor homolog, chloroplastic [Cucurbita m...	[more]
XP_022973268.1	9.0e-120	99.56	cell division topological specificity factor homolog, chloroplastic [Cucurbita m...	[more]
XP_023538501.1	6.5e-118	98.68	cell division topological specificity factor homolog, chloroplastic [Cucurbita p...	[more]
XP_022158361.1	9.3e-109	91.59	cell division topological specificity factor homolog, chloroplastic-like isoform...	[more]
XP_004143776.1	2.3e-107	91.15	PREDICTED: cell division topological specificity factor homolog, chloroplastic-l...	[more]

BLAST of Carg26230 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69390.1	2.0e-68	60.79	homologue of bacterial MinE 1	[more]

BLAST of Carg26230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C4Z7\|MINE1_ARATH	3.5e-67	60.79	Cell division topological specificity factor homolog, chloroplastic OS=Arabidops...	[more]
sp\|A7FXV6\|MINE_CLOB1	9.5e-04	28.75	Cell division topological specificity factor OS=Clostridium botulinum (strain AT...	[more]
sp\|C3L3K3\|MINE_CLOB6	9.5e-04	28.75	Cell division topological specificity factor OS=Clostridium botulinum (strain 65...	[more]
sp\|A5I676\|MINE_CLOBH	9.5e-04	28.75	Cell division topological specificity factor OS=Clostridium botulinum (strain Ha...	[more]
sp\|C1FVX5\|MINE_CLOBJ	9.5e-04	28.75	Cell division topological specificity factor OS=Clostridium botulinum (strain Ky...	[more]

BLAST of Carg26230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQJ9\|A0A0A0KQJ9_CUCSA	1.5e-107	91.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G469010 PE=4 SV=1	[more]
tr\|A0A1S3CPL3\|A0A1S3CPL3_CUCME	5.8e-107	90.71	cell division topological specificity factor homolog, chloroplastic-like OS=Cucu...	[more]
tr\|A0A2P4M3X8\|A0A2P4M3X8_QUESU	3.4e-83	70.80	Cell division topological specificity factor like, chloroplastic OS=Quercus sube...	[more]
tr\|A0A2I4DJ30\|A0A2I4DJ30_9ROSI	6.4e-82	72.12	cell division topological specificity factor homolog, chloroplastic-like isoform...	[more]
tr\|A0A2P4HFN8\|A0A2P4HFN8_QUESU	6.4e-82	70.35	Cell division topological specificity factor like, chloroplastic OS=Quercus sube...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0032955	regulation of barrier septum assembly
GO:0051301	cell division

Vocabulary: **INTERPRO**
Term	Definition
IPR005527	MinE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032955	regulation of barrier septum assembly
biological_process	GO:0051301	cell division
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26230-RA	Carg26230-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005527	Cell division topological specificity factor MinE	PFAM	PF03776	MinE	coord: 121..186 e-value: 4.9E-13 score: 48.8
IPR005527	Cell division topological specificity factor MinE	PANTHER	PTHR33404	FAMILY NOT NAMED	coord: 1..226
None	No IPR available	PANTHER	PTHR33404:SF8	SUBFAMILY NOT NAMED	coord: 1..226

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26230	Csa5G469010	Cucumber (Chinese Long) v2	carcuB0344
Carg26230	MELO3C002974	Melon (DHL92) v3.5.1	carmeB0322
Carg26230	ClCG09G021950	Watermelon (Charleston Gray)	carwcgB0310
Carg26230	CSPI05G16160	Wild cucumber (PI 183967)	carcpiB0350
Carg26230	Cucsa.033780	Cucumber (Gy14) v1	carcgyB0374
Carg26230	CmaCh05G008950	Cucurbita maxima (Rimu)	carcmaB0445
Carg26230	CmaCh12G007360	Cucurbita maxima (Rimu)	carcmaB0444
Carg26230	CmoCh12G006760	Cucurbita moschata (Rifu)	carcmoB0437
Carg26230	Lsi02G017630	Bottle gourd (USVL1VR-Ls)	carlsiB291
Carg26230	Cp4.1LG07g06410	Cucurbita pepo (Zucchini)	carcpeB0441
Carg26230	CsGy5G015850	Cucumber (Gy14) v2	carcgybB0328
Carg26230	MELO3C002974.2	Melon (DHL92) v3.6.1	carmedB0331
Carg26230	CsaV3_5G025150	Cucumber (Chinese Long) v3	carcucB0349
Carg26230	Cla97C09G183420	Watermelon (97103) v2	carwmbB0326
Carg26230	Bhi06G000717	Wax gourd	carwgoB0402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26230	Watermelon (97103) v1	carwmB0308