CmoCh12G004240 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G004240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(DNA binding protein) (MYB-related transcription factor)
Location	Cmo_Chr12 : 2596179 .. 2596510 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTGACCAATATTACTCCAACGAACAAAGGTTAATCTCTTTCTCTATTGGATGTATTTCGGAATTAATTTGTATAGTTTGAGCGTTTGA

mRNA sequence

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTGACCAATATTACTCCAACGAACAAAGTTTGAGCGTTTGA

Coding sequence (CDS)

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTGACCAATATTACTCCAACGAACAAAGTTTGAGCGTTTGA

Homology

[Close]

BLAST of CmoCh12G004240 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-21
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 6  SSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SS + W+  QNK+FE AL VYDKD+PDRW  +A AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNYSNSSDQYYSNEQSLS 94
           NIE GR+PLPNY      + SN +S++
Sbjct: 62 INIETGRVPLPNYKT----FESNSRSIN 85

[Close]

BLAST of CmoCh12G004240 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.8e-21
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 63
          +SSS SS SS SW+ KQNK FE AL  YD+D+P+RWQ +A  VGGKT EEVKRHYE+LV+
Sbjct: 2  ASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQ 61

Query: 64 DVHNIEIGRIPLPNYSNS 82
          D+++IE G +P PNY  S
Sbjct: 62 DINSIENGHVPFPNYRTS 79

[Close]

BLAST of CmoCh12G004240 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-20
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 6  SSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 65
          +SSS SSS+SW+ KQNK+FE AL VYDKD+PDRWQ +A AVG K+AEEVKRHY++LVED+
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY 79
           NIE   +PLP Y
Sbjct: 62 MNIEQDLVPLPKY 74

[Close]

BLAST of CmoCh12G004240 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.6e-20
Identity = 46/80 (57.50%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 6  SSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SSS SW+ K+NK+FE AL  YD+D+PDRW  +A AVGGK+AEEV+RHYE+L+ DV
Sbjct: 2  ASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDV 61

Query: 66 HNIEIGRIPLPNYSNSSDQY 86
          ++IE GR P PNY ++ + +
Sbjct: 62 NDIESGRYPHPNYRSNGNNH 81

[Close]

BLAST of CmoCh12G004240 vs. Swiss-Prot
Match: RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-19
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 1


Query: 7  SSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVH 66
          +SSS S++SW+ +++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV+
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVN 61

Query: 67 NIEIGRIPLPNYSNSS 83
          +IE GR P P Y N++
Sbjct: 62 DIESGRYPQPRYRNTN 77

[Close]

BLAST of CmoCh12G004240 vs. TrEMBL
Match: A0A0A0LNL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361640 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 1


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEM 60
          M+SS++SSSSSSS+SWS KQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEM
Sbjct: 1  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYS---NSSDQYYSNEQSLSV 95
          LVEDVHNIE G++PLPNYS   + ++ +   EQ  S+
Sbjct: 61 LVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSL 97

[Close]

BLAST of CmoCh12G004240 vs. TrEMBL
Match: E0CQD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12530 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-22
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 11 SSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 70
          SSSN+W+ KQNK+FENAL +YDKD+PDRWQ +A AVGGKT EEVKRHYEMLVEDV +IE 
Sbjct: 3  SSSNNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVEDVKHIES 62

Query: 71 GRIPLPNY-----SNSSDQYYSNEQSLS 94
          G++PLPNY     SN    +   EQ  S
Sbjct: 63 GQVPLPNYRKAGASNKGYSFNDEEQRAS 90

[Close]

BLAST of CmoCh12G004240 vs. TrEMBL
Match: B9R7U9_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1594410 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-22
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 11 SSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 70
          +SS+SW+PKQNK+FENAL +YDKD+PDRW  LA AVGGKT EEVKRHYE+LVEDV  IE 
Sbjct: 2  ASSSSWTPKQNKLFENALAIYDKDTPDRWHNLARAVGGKTIEEVKRHYELLVEDVREIEA 61

Query: 71 GRIPLPNYSNS 82
          G +PLPNY  +
Sbjct: 62 GHVPLPNYKKA 72

[Close]

BLAST of CmoCh12G004240 vs. TrEMBL
Match: A0A067KU42_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04433 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.4e-22
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 9  SSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNI 68
          +S+S +SW+PKQNK+FENAL +YD+D+PDRW  LA AVGGKT EEVKRHYE+LVEDV  I
Sbjct: 2  ASASGSSWTPKQNKLFENALAIYDRDTPDRWHNLARAVGGKTVEEVKRHYELLVEDVRQI 61

Query: 69 EIGRIPLPNY 79
          E G++PLPNY
Sbjct: 62 EAGQVPLPNY 71

[Close]

BLAST of CmoCh12G004240 vs. TrEMBL
Match: A0A072VEW4_MEDTR (MYB family transcription factor OS=Medicago truncatula GN=MTR_1g022290 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-22
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 11 SSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 70
          SSS++W+ KQNK FENAL +YDKD+PDRWQKLA AVGGKT EEVKRHYEMLVED+  IE 
Sbjct: 2  SSSSAWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKRHYEMLVEDLKQIEE 61

Query: 71 GRIPLPNYSNSSD----QYYSNEQSL 93
          G +PLP Y N++      Y   EQ L
Sbjct: 62 GHVPLPKYRNAATIKGYNYSDEEQRL 87

[Close]

BLAST of CmoCh12G004240 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 101.3 bits (251), Expect = 3.4e-22
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 6  SSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SS + W+  QNK+FE AL VYDKD+PDRW  +A AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNYSNSSDQYYSNEQSLS 94
           NIE GR+PLPNY      + SN +S++
Sbjct: 62 INIETGRVPLPNYKT----FESNSRSIN 85

[Close]

BLAST of CmoCh12G004240 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-22
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 63
          +SSS SS SS SW+ KQNK FE AL  YD+D+P+RWQ +A  VGGKT EEVKRHYE+LV+
Sbjct: 2  ASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQ 61

Query: 64 DVHNIEIGRIPLPNYSNS 82
          D+++IE G +P PNY  S
Sbjct: 62 DINSIENGHVPFPNYRTS 79

[Close]

BLAST of CmoCh12G004240 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 100.5 bits (249), Expect = 5.7e-22
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 6  SSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 65
          +SSS SSS+SW+ KQNK+FE AL VYDKD+PDRWQ +A AVG K+AEEVKRHY++LVED+
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY 79
           NIE   +PLP Y
Sbjct: 62 MNIEQDLVPLPKY 74

[Close]

BLAST of CmoCh12G004240 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-20
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 1


Query: 7  SSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVH 66
          +SSS S++SW+ +++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV+
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVN 61

Query: 67 NIEIGRIPLPNYSNSS 83
          +IE GR P P Y N++
Sbjct: 62 DIESGRYPQPRYRNTN 77

[Close]

BLAST of CmoCh12G004240 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.7e-19
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 63
          +S S SS  S SW+ KQNK FE AL VYD+D+PDRW  +A AVGGKT EE KR Y++LV 
Sbjct: 2  ASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVR 61

Query: 64 DVHNIEIGRIPLPNYSNSS 83
          D+ +IE G +P P+Y  ++
Sbjct: 62 DIESIENGHVPFPDYKTTT 80

[Close]

BLAST of CmoCh12G004240 vs. NCBI nr
Match: gi|659087934|ref|XP_008444713.1| (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-28
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEM 60
          M+SS++SSSSSSS+SWS KQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEM
Sbjct: 1  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYSN--SSDQYYSNEQSL 93
          LVEDVHNIE G++PLPNYS   S + +   EQ L
Sbjct: 61 LVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRL 94

[Close]

BLAST of CmoCh12G004240 vs. NCBI nr
Match: gi|700207480|gb|KGN62599.1| (hypothetical protein Csa_2G361640 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 1


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEM 60
          M+SS++SSSSSSS+SWS KQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEM
Sbjct: 1  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYS---NSSDQYYSNEQSLSV 95
          LVEDVHNIE G++PLPNYS   + ++ +   EQ  S+
Sbjct: 61 LVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSL 97

[Close]

BLAST of CmoCh12G004240 vs. NCBI nr
Match: gi|731429572|ref|XP_010664694.1| (PREDICTED: protein RADIALIS-like 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 11 SSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 70
          SSSN+W+ KQNK+FENAL +YDKD+PDRWQ +A AVGGKT EEVKRHYEMLVEDV +IE 
Sbjct: 3  SSSNNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVEDVKHIES 62

Query: 71 GRIPLPNY-----SNSSDQYYSNEQSL 93
          G++PLPNY     SN    +   EQ L
Sbjct: 63 GQVPLPNYRKAGASNKGYSFNDEEQRL 89

[Close]

BLAST of CmoCh12G004240 vs. NCBI nr
Match: gi|502126043|ref|XP_004499158.1| (PREDICTED: protein RADIALIS-like 4 [Cicer arietinum])

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 11 SSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 70
          +SS+SW+PKQNK FENAL +YDKD+PDRWQKLA AVGGKT EEVKRHYE+LVED+ +IE 
Sbjct: 2  ASSSSWTPKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKRHYEILVEDLKHIEQ 61

Query: 71 GRIPLPNYSNSSD--------QYYSNEQSLSV 95
          G +PLP Y N+S          Y   EQ L V
Sbjct: 62 GLVPLPKYRNASTIGSSIKSYSYIDEEQRLKV 93

[Close]

BLAST of CmoCh12G004240 vs. NCBI nr
Match: gi|225458277|ref|XP_002282461.1| (PREDICTED: protein RADIALIS-like 3 isoform X2 [Vitis vinifera])

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-22
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 11 SSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 70
          SSSN+W+ KQNK+FENAL +YDKD+PDRWQ +A AVGGKT EEVKRHYEMLVEDV +IE 
Sbjct: 3  SSSNNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVEDVKHIES 62

Query: 71 GRIPLPNY-----SNSSDQYYSNEQSLS 94
          G++PLPNY     SN    +   EQ  S
Sbjct: 63 GQVPLPNYRKAGASNKGYSFNDEEQRAS 90

The following BLAST results are available for this feature:

BLAST of CmoCh12G004240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL6_ARATH	6.0e-21	59.09	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]
RADL1_ARATH	7.8e-21	62.82	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL5_ARATH	1.0e-20	68.49	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]
RADL3_ARATH	8.6e-20	57.50	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL4_ARATH	4.3e-19	59.21	Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1	[more]

BLAST of CmoCh12G004240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNL9_CUCSA	2.1e-28	73.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361640 PE=4 SV=1	[more]
E0CQD3_VITVI	1.7e-22	64.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12530 PE=4 SV=...	[more]
B9R7U9_RICCO	2.9e-22	71.83	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1594410 PE=4 SV=1	[more]
A0A067KU42_JATCU	6.4e-22	71.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04433 PE=4 SV=1	[more]
A0A072VEW4_MEDTR	8.4e-22	65.12	MYB family transcription factor OS=Medicago truncatula GN=MTR_1g022290 PE=4 SV=1	[more]

BLAST of CmoCh12G004240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75250.1	3.4e-22	59.09	RAD-like 6	[more]
AT4G39250.1	4.4e-22	62.82	RAD-like 1	[more]
AT1G19510.1	5.7e-22	68.49	RAD-like 5	[more]
AT2G18328.1	2.4e-20	59.21	RAD-like 4	[more]
AT2G21650.1	7.7e-19	55.70	Homeodomain-like superfamily protein	[more]

BLAST of CmoCh12G004240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087934\|ref\|XP_008444713.1\|	1.0e-28	76.60	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
gi\|700207480\|gb\|KGN62599.1\|	3.0e-28	73.20	hypothetical protein Csa_2G361640 [Cucumis sativus]	[more]
gi\|731429572\|ref\|XP_010664694.1\|	1.4e-22	65.52	PREDICTED: protein RADIALIS-like 3 isoform X1 [Vitis vinifera]	[more]
gi\|502126043\|ref\|XP_004499158.1\|	1.9e-22	63.04	PREDICTED: protein RADIALIS-like 4 [Cicer arietinum]	[more]
gi\|225458277\|ref\|XP_002282461.1\|	2.4e-22	64.77	PREDICTED: protein RADIALIS-like 3 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G004240.1	CmoCh12G004240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 score: 3.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 15..68 score: 5.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 14..68 score: 8.97
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 8..62 score: 6
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 1..83 score: 1.0
None	No IPR available	PANTHER	PTHR24078:SF279	DUPLICATED SANT DNA-BINDING DOMAIN-CONTAINING PROTEIN	coord: 1..83 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G004240	Cucsa.232170	Cucumber (Gy14) v1	cgycmoB0641
CmoCh12G004240	CmaCh12G004740	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G004240	CmaCh05G002390	Cucurbita maxima (Rimu)	cmacmoB770
CmoCh12G004240	Csa2G361640	Cucumber (Chinese Long) v2	cmocuB158
CmoCh12G004240	MELO3C010942	Melon (DHL92) v3.5.1	cmomeB146
CmoCh12G004240	ClCG08G015090	Watermelon (Charleston Gray)	cmowcgB161
CmoCh12G004240	CSPI02G20030	Wild cucumber (PI 183967)	cmocpiB160
CmoCh12G004240	Lsi08G013960	Bottle gourd (USVL1VR-Ls)	cmolsiB175
CmoCh12G004240	Lsi04G016660	Bottle gourd (USVL1VR-Ls)	cmolsiB165
CmoCh12G004240	Cp4.1LG07g04080	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G004240	Cp4.1LG11g01910	Cucurbita pepo (Zucchini)	cmocpeB154
CmoCh12G004240	Cp4.1LG02g07430	Cucurbita pepo (Zucchini)	cmocpeB166
CmoCh12G004240	MELO3C010942.2	Melon (DHL92) v3.6.1	cmomedB161
CmoCh12G004240	CsaV3_3G045170	Cucumber (Chinese Long) v3	cmocucB0198
CmoCh12G004240	CsaV3_2G028700	Cucumber (Chinese Long) v3	cmocucB0186
CmoCh12G004240	Cla97C05G100450	Watermelon (97103) v2	cmowmbB166
CmoCh12G004240	Bhi04G000222	Wax gourd	cmowgoB0190
CmoCh12G004240	CsGy3G040260	Cucumber (Gy14) v2	cgybcmoB276
CmoCh12G004240	CsGy2G019780	Cucumber (Gy14) v2	cgybcmoB171
CmoCh12G004240	Carg04055	Silver-seed gourd	carcmoB1310
CmoCh12G004240	Carg17147	Silver-seed gourd	carcmoB1262
CmoCh12G004240	Carg11802	Silver-seed gourd	carcmoB0257

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G004240	CmoCh01G019730	Cucurbita moschata (Rifu)	cmocmoB141
CmoCh12G004240	CmoCh05G002460	Cucurbita moschata (Rifu)	cmocmoB156

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G004240	Cucumber (Gy14) v2	cgybcmoB703
CmoCh12G004240	Melon (DHL92) v3.6.1	cmomedB193
CmoCh12G004240	Silver-seed gourd	carcmoB0145
CmoCh12G004240	Silver-seed gourd	carcmoB0543
CmoCh12G004240	Watermelon (97103) v2	cmowmbB178
CmoCh12G004240	Watermelon (97103) v2	cmowmbB148
CmoCh12G004240	Cucurbita moschata (Rifu)	cmocmoB004
CmoCh12G004240	Cucurbita moschata (Rifu)	cmocmoB144
CmoCh12G004240	Cucurbita moschata (Rifu)	cmocmoB162
CmoCh12G004240	Cucumber (Gy14) v1	cgycmoB0925
CmoCh12G004240	Cucurbita maxima (Rimu)	cmacmoB032
CmoCh12G004240	Cucurbita maxima (Rimu)	cmacmoB453
CmoCh12G004240	Cucurbita maxima (Rimu)	cmacmoB843
CmoCh12G004240	Wild cucumber (PI 183967)	cmocpiB170
CmoCh12G004240	Wild cucumber (PI 183967)	cmocpiB185
CmoCh12G004240	Cucumber (Chinese Long) v2	cmocuB167
CmoCh12G004240	Cucumber (Chinese Long) v2	cmocuB181
CmoCh12G004240	Melon (DHL92) v3.5.1	cmomeB156
CmoCh12G004240	Melon (DHL92) v3.5.1	cmomeB174
CmoCh12G004240	Watermelon (Charleston Gray)	cmowcgB141
CmoCh12G004240	Watermelon (Charleston Gray)	cmowcgB149
CmoCh12G004240	Watermelon (97103) v1	cmowmB134
CmoCh12G004240	Watermelon (97103) v1	cmowmB145
CmoCh12G004240	Watermelon (97103) v1	cmowmB153
CmoCh12G004240	Cucurbita pepo (Zucchini)	cmocpeB146
CmoCh12G004240	Cucurbita pepo (Zucchini)	cmocpeB164
CmoCh12G004240	Cucurbita pepo (Zucchini)	cmocpeB172
CmoCh12G004240	Bottle gourd (USVL1VR-Ls)	cmolsiB152