CmaCh12G004740 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G004740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	MYB family transcription factor
Location	Cma_Chr12 : 2468002 .. 2469389 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCTTCTTCTTCTTCATCAAGCTCCAACGTATGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTACCCAATTACTCCAATTCTTCTAAACAATATTACTCCAACTTTCTTGATGAAGAACAAAGGTTAATCTCTTTCTCTATTCGATGTAGATTTTGGAATTAATTTGCGTCGTTTGAGCGTTTGATTTTGGTCGGAATAATTAATGAGCTCGAGAACGATAAACACTCTGATAAGACTCGTTTTCGGTTAAATAATAAGTTCGAATTGTTTCAGTCATAAATCATTTGTGATCACAGGTGTACACGGGTTGGGTTGAAAAAATCTTTTAGACCCACTTGAAATTTCATGTTAGTATGGTTTGAGCGTTTGATTTTGGCCGGAAAAATTAATGTGTGAGAGAAGGATGAACACTCATAATAAGAAAAAGCTTGTTTTCGGACCATTTCAGTCATAAACCATTTGTGATCACGGGTTGGGTTGAAAAAATCTTTTAGACCCACTTGAAATTTCAGGTTAGTATGAGCGTTTGATTTTGGTCGGAAAAATTAATGGGTTCGAGAACGATGAACACTCATGATAAGAAAAAACTCATTTTCGGTTAAATAATAAGCTCGATCCGTTTCAATCATAAACCATTTTTTATTACTTGGGTGTATACAAGTTGGGTTGAAAAAATCTTTTAGGCTAACTCGAAATTTCAAGTTGGTTGGGTTAGTGGAACAGAGGTTACCGTCTATCCCATTTTAACCCTTTATTTTCAAATTTGATTGTCCGGGTTCTTTTAAAAAAATACCATAATTATCCATATTGATAATTAAAATATTATAAAGTTTAAATACAAAACATTTACGAGTCATAATACATCACTGTCAACAGTTACCTATCTTAAATATTCTTAAATTTTTAAAAAATTAGGGTTTGATTGAATTGTAACTTTATTTTTCGATTTTTGCAGGTTGAAGGGTCTAAAGCTATAATGACTTGCAACACGAGACAGAAGATTAATATATTTATATTATATATAATAAGAATATTGTATAAAATATTGCGTCTCGATTTCGGTTTATTGTACTTAAATTAGCTGATCTTCAGCCTTAGAATGCTTGCATTTAGGAGCGTTCACGATTTTTGGTTCGGTATGATTTTCATCCAAACCAACTTAATTCTTCAATTTGCTATAAATTTGAATCGGTTGAACTGATTATCTTTTTTTTTATTTCAGTTTTAATTGA

mRNA sequence

ATGAGTTCTTCTTCTTCTTCTTCATCAAGCTCCAACGTATGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTACCCAATTACTCCAATTCTTCTAAACAATATTACTCCAACTTTCTTGATGAAGAACAAAGTTTTAATTGA

Coding sequence (CDS)

ATGAGTTCTTCTTCTTCTTCTTCATCAAGCTCCAACGTATGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCCGGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTACCCAATTACTCCAATTCTTCTAAACAATATTACTCCAACTTTCTTGATGAAGAACAAAGTTTTAATTGA

Protein sequence

MSSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSKQYYSNFLDEEQSFN

Homology

[Close]

BLAST of CmaCh12G004740 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-21
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1


Query: 1  MSSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60
          M+SSS SS SS  W++KQNK FE AL  YD+D+P+RWQ +A  VGGKT EEVKRHYE+LV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVHNIEIGRIPLPNYSNS 80
          +D+++IE G +P PNY  S
Sbjct: 61 QDINSIENGHVPFPNYRTS 79

[Close]

BLAST of CmaCh12G004740 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-21
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 4  SSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 63
          +S+S SS + W+  QNK+FE AL VYDKD+PDRW  +A AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 64 HNIEIGRIPLPNY 77
           NIE GR+PLPNY
Sbjct: 62 INIETGRVPLPNY 74

[Close]

BLAST of CmaCh12G004740 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-20
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 1


Query: 1  MSSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60
          M+SSS SSSSS  W+SKQNK+FE AL VYDKD+PDRWQ +A AVG K+AEEVKRHY++LV
Sbjct: 1  MASSSMSSSSS--WTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILV 60

Query: 61 EDVHNIEIGRIPLPNYSNSSKQYYSNFLDE 91
          ED+ NIE   +PLP Y        S  +D+
Sbjct: 61 EDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of CmaCh12G004740 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-19
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 1


Query: 1  MSSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60
          M+S+S SSS+S  W+ K+NK+FE AL  YD+D+PDRW  +A AVGGK+AEEV+RHYE+L+
Sbjct: 1  MASNSMSSSAS--WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLI 60

Query: 61 EDVHNIEIGRIPLPNYSNSSKQY 84
           DV++IE GR P PNY ++   +
Sbjct: 61 RDVNDIESGRYPHPNYRSNGNNH 81

[Close]

BLAST of CmaCh12G004740 vs. Swiss-Prot
Match: RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-19
Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = 1


Query: 5  SSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVH 64
          +SSS S++ W+++++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV+
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVN 61

Query: 65 NIEIGRIPLPNYSNSS 81
          +IE GR P P Y N++
Sbjct: 62 DIESGRYPQPRYRNTN 77

[Close]

BLAST of CmaCh12G004740 vs. TrEMBL
Match: A0A0A0LNL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361640 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.9e-31
Identity = 73/91 (80.22%), Postives = 82/91 (90.11%), Query Frame = 1


Query: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 61
          S++SSSSSSS+ WSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEMLVE
Sbjct: 4  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVE 63

Query: 62 DVHNIEIGRIPLPNYSNSSKQYYSNFLDEEQ 93
          DVHNIE G++PLPNYS     Y +NF+DEEQ
Sbjct: 64 DVHNIETGKVPLPNYS-KHYSYNNNFVDEEQ 93

[Close]

BLAST of CmaCh12G004740 vs. TrEMBL
Match: W9RQB4_9ROSA (DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_009009 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-24
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 10 SSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEIG 69
          +S+ W++KQNK+FENAL +YDKDSPDRW  LA AVGGKT EEVKRHYEMLVEDV+ IE G
Sbjct: 2  ASSTWTAKQNKLFENALAIYDKDSPDRWHNLARAVGGKTVEEVKRHYEMLVEDVNKIEAG 61

Query: 70 RIPLPNYS--NSSKQYYSNFLDEEQ 93
           +PLPNY    ++ + Y++F+DEEQ
Sbjct: 62 EVPLPNYRKIGANNKAYNSFMDEEQ 86

[Close]

BLAST of CmaCh12G004740 vs. TrEMBL
Match: A0A072VEW4_MEDTR (MYB family transcription factor OS=Medicago truncatula GN=MTR_1g022290 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-24
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 9  SSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 68
          SSS+ W++KQNK FENAL +YDKD+PDRWQKLA AVGGKT EEVKRHYEMLVED+  IE 
Sbjct: 2  SSSSAWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKRHYEMLVEDLKQIEE 61

Query: 69 GRIPLPNYSNSSKQYYSNFLDEEQ 93
          G +PLP Y N++     N+ DEEQ
Sbjct: 62 GHVPLPKYRNAATIKGYNYSDEEQ 85

[Close]

BLAST of CmaCh12G004740 vs. TrEMBL
Match: E0CQD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12530 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.9e-24
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 9  SSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 68
          SSSN W++KQNK+FENAL +YDKD+PDRWQ +A AVGGKT EEVKRHYEMLVEDV +IE 
Sbjct: 3  SSSNNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVEDVKHIES 62

Query: 69 GRIPLPNY--SNSSKQYYSNFLDEEQ 93
          G++PLPNY  + +S + YS F DEEQ
Sbjct: 63 GQVPLPNYRKAGASNKGYS-FNDEEQ 87

[Close]

BLAST of CmaCh12G004740 vs. TrEMBL
Match: A0A151S927_CAJCA (DnaJ isogeny subfamily C member 2 OS=Cajanus cajan GN=KK1_026866 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 9  SSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 68
          +SS+ W+SKQNK FENAL +YDKD+PDRWQ LA AVGGKT EEVKRHYEMLV+D+  IE 
Sbjct: 2  ASSSAWTSKQNKKFENALAIYDKDTPDRWQNLARAVGGKTVEEVKRHYEMLVDDLKQIEE 61

Query: 69 GRIPLPNYSNSSKQYYSN-----FLDEEQSFN 96
          G +PLPNY N S     N     ++D+EQ FN
Sbjct: 62 GHVPLPNYRNVSATVGPNIKGYTYMDQEQRFN 93

[Close]

BLAST of CmaCh12G004740 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-22
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1


Query: 1  MSSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60
          M+SSS SS SS  W++KQNK FE AL  YD+D+P+RWQ +A  VGGKT EEVKRHYE+LV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVHNIEIGRIPLPNYSNS 80
          +D+++IE G +P PNY  S
Sbjct: 61 QDINSIENGHVPFPNYRTS 79

[Close]

BLAST of CmaCh12G004740 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-22
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 4  SSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 63
          +S+S SS + W+  QNK+FE AL VYDKD+PDRW  +A AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 64 HNIEIGRIPLPNY 77
           NIE GR+PLPNY
Sbjct: 62 INIETGRVPLPNY 74

[Close]

BLAST of CmaCh12G004740 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-22
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 1


Query: 1  MSSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60
          M+SSS SSSSS  W+SKQNK+FE AL VYDKD+PDRWQ +A AVG K+AEEVKRHY++LV
Sbjct: 1  MASSSMSSSSS--WTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILV 60

Query: 61 EDVHNIEIGRIPLPNYSNSSKQYYSNFLDE 91
          ED+ NIE   +PLP Y        S  +D+
Sbjct: 61 EDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of CmaCh12G004740 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-20
Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = 1


Query: 5  SSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVH 64
          +SSS S++ W+++++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV+
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVN 61

Query: 65 NIEIGRIPLPNYSNSS 81
          +IE GR P P Y N++
Sbjct: 62 DIESGRYPQPRYRNTN 77

[Close]

BLAST of CmaCh12G004740 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 4.6e-19
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 1


Query: 1  MSSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60
          M+S S SS  S  W+ KQNK FE AL VYD+D+PDRW  +A AVGGKT EE KR Y++LV
Sbjct: 1  MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLV 60

Query: 61 EDVHNIEIGRIPLPNYSNSSKQYYSNFLDEEQ 93
           D+ +IE G +P P+Y  ++       L +E+
Sbjct: 61 RDIESIENGHVPFPDYKTTTGNSNRGRLRDEE 92

[Close]

BLAST of CmaCh12G004740 vs. NCBI nr
Match: gi|659087934|ref|XP_008444713.1| (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 61
          S++SSSSSSS+ WSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEMLVE
Sbjct: 4  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVE 63

Query: 62 DVHNIEIGRIPLPNYSNSSKQY-YSNFLDEEQ 93
          DVHNIE G++PLPNY   SK Y Y+NFLDEEQ
Sbjct: 64 DVHNIETGKVPLPNY---SKHYSYNNFLDEEQ 92

[Close]

BLAST of CmaCh12G004740 vs. NCBI nr
Match: gi|700207480|gb|KGN62599.1| (hypothetical protein Csa_2G361640 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 8.4e-31
Identity = 73/91 (80.22%), Postives = 82/91 (90.11%), Query Frame = 1


Query: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 61
          S++SSSSSSS+ WSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEMLVE
Sbjct: 4  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVE 63

Query: 62 DVHNIEIGRIPLPNYSNSSKQYYSNFLDEEQ 93
          DVHNIE G++PLPNYS     Y +NF+DEEQ
Sbjct: 64 DVHNIETGKVPLPNYS-KHYSYNNNFVDEEQ 93

[Close]

BLAST of CmaCh12G004740 vs. NCBI nr
Match: gi|703120277|ref|XP_010102066.1| (DnaJ homolog subfamily C member 2 [Morus notabilis])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-24
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 10 SSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEIG 69
          +S+ W++KQNK+FENAL +YDKDSPDRW  LA AVGGKT EEVKRHYEMLVEDV+ IE G
Sbjct: 2  ASSTWTAKQNKLFENALAIYDKDSPDRWHNLARAVGGKTVEEVKRHYEMLVEDVNKIEAG 61

Query: 70 RIPLPNYS--NSSKQYYSNFLDEEQ 93
           +PLPNY    ++ + Y++F+DEEQ
Sbjct: 62 EVPLPNYRKIGANNKAYNSFMDEEQ 86

[Close]

BLAST of CmaCh12G004740 vs. NCBI nr
Match: gi|922397834|ref|XP_013466107.1| (MYB family transcription factor [Medicago truncatula])

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-24
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 9  SSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 68
          SSS+ W++KQNK FENAL +YDKD+PDRWQKLA AVGGKT EEVKRHYEMLVED+  IE 
Sbjct: 2  SSSSAWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKRHYEMLVEDLKQIEE 61

Query: 69 GRIPLPNYSNSSKQYYSNFLDEEQ 93
          G +PLP Y N++     N+ DEEQ
Sbjct: 62 GHVPLPKYRNAATIKGYNYSDEEQ 85

[Close]

BLAST of CmaCh12G004740 vs. NCBI nr
Match: gi|225458277|ref|XP_002282461.1| (PREDICTED: protein RADIALIS-like 3 isoform X2 [Vitis vinifera])

HSP 1 Score: 117.9 bits (294), Expect = 9.9e-24
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 9  SSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEI 68
          SSSN W++KQNK+FENAL +YDKD+PDRWQ +A AVGGKT EEVKRHYEMLVEDV +IE 
Sbjct: 3  SSSNNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVEDVKHIES 62

Query: 69 GRIPLPNY--SNSSKQYYSNFLDEEQ 93
          G++PLPNY  + +S + YS F DEEQ
Sbjct: 63 GQVPLPNYRKAGASNKGYS-FNDEEQ 87

The following BLAST results are available for this feature:

BLAST of CmaCh12G004740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL1_ARATH	2.1e-21	62.03	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL6_ARATH	2.7e-21	67.12	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]
RADL5_ARATH	1.3e-20	61.11	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]
RADL3_ARATH	3.3e-19	56.63	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL4_ARATH	5.6e-19	57.89	Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1	[more]

BLAST of CmaCh12G004740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNL9_CUCSA	5.9e-31	80.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361640 PE=4 SV=1	[more]
W9RQB4_9ROSA	1.4e-24	65.88	DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_009009 PE=4 SV=1	[more]
A0A072VEW4_MEDTR	5.3e-24	67.86	MYB family transcription factor OS=Medicago truncatula GN=MTR_1g022290 PE=4 SV=1	[more]
E0CQD3_VITVI	6.9e-24	69.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12530 PE=4 SV=...	[more]
A0A151S927_CAJCA	1.2e-23	63.04	DnaJ isogeny subfamily C member 2 OS=Cajanus cajan GN=KK1_026866 PE=4 SV=1	[more]

BLAST of CmaCh12G004740 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	1.2e-22	62.03	RAD-like 1	[more]
AT1G75250.1	1.5e-22	67.12	RAD-like 6	[more]
AT1G19510.1	7.6e-22	61.11	RAD-like 5	[more]
AT2G18328.1	3.2e-20	57.89	RAD-like 4	[more]
AT2G21650.1	4.6e-19	50.00	Homeodomain-like superfamily protein	[more]

BLAST of CmaCh12G004740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087934\|ref\|XP_008444713.1\|	1.3e-31	82.61	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
gi\|700207480\|gb\|KGN62599.1\|	8.4e-31	80.22	hypothetical protein Csa_2G361640 [Cucumis sativus]	[more]
gi\|703120277\|ref\|XP_010102066.1\|	2.0e-24	65.88	DnaJ homolog subfamily C member 2 [Morus notabilis]	[more]
gi\|922397834\|ref\|XP_013466107.1\|	7.6e-24	67.86	MYB family transcription factor [Medicago truncatula]	[more]
gi\|225458277\|ref\|XP_002282461.1\|	9.9e-24	69.77	PREDICTED: protein RADIALIS-like 3 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G004740.1	CmaCh12G004740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 10..62 score: 3.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 14..66 score: 6.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 12..66 score: 2.61
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 1..80 score: 7.0
None	No IPR available	PANTHER	PTHR24078:SF279	DUPLICATED SANT DNA-BINDING DOMAIN-CONTAINING PROTEIN	coord: 1..80 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G004740	Cucsa.342360	Cucumber (Gy14) v1	cgycmaB0925
CmaCh12G004740	Csa3G857030	Cucumber (Chinese Long) v2	cmacuB183
CmaCh12G004740	CSPI03G42730	Wild cucumber (PI 183967)	cmacpiB185
CmaCh12G004740	CmoCh12G004240	Cucurbita moschata (Rifu)	cmacmoB176
CmaCh12G004740	CmoCh05G002460	Cucurbita moschata (Rifu)	cmacmoB199
CmaCh12G004740	Lsi08G013960	Bottle gourd (USVL1VR-Ls)	cmalsiB184
CmaCh12G004740	Cp4.1LG11g01910	Cucurbita pepo (Zucchini)	cmacpeB179
CmaCh12G004740	CsaV3_2G028700	Cucumber (Chinese Long) v3	cmacucB0203
CmaCh12G004740	Cla97C05G100450	Watermelon (97103) v2	cmawmbB181
CmaCh12G004740	Carg08723	Silver-seed gourd	carcmaB0135
CmaCh12G004740	Carg11802	Silver-seed gourd	carcmaB0249
CmaCh12G004740	Carg04055	Silver-seed gourd	carcmaB1349

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G004740	Cucurbita pepo (Zucchini)	cmacpeB190
CmaCh12G004740	Cucurbita pepo (Zucchini)	cmacpeB198
CmaCh12G004740	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G004740	Bottle gourd (USVL1VR-Ls)	cmalsiB175
CmaCh12G004740	Cucumber (Gy14) v2	cgybcmaB179
CmaCh12G004740	Cucumber (Gy14) v2	cgybcmaB303
CmaCh12G004740	Melon (DHL92) v3.6.1	cmamedB170
CmaCh12G004740	Melon (DHL92) v3.6.1	cmamedB182
CmaCh12G004740	Silver-seed gourd	carcmaB1292
CmaCh12G004740	Cucumber (Chinese Long) v3	cmacucB0213
CmaCh12G004740	Watermelon (97103) v2	cmawmbB194
CmaCh12G004740	Wax gourd	cmawgoB0194
CmaCh12G004740	Cucurbita maxima (Rimu)	cmacmaB034
CmaCh12G004740	Cucurbita maxima (Rimu)	cmacmaB199
CmaCh12G004740	Cucurbita maxima (Rimu)	cmacmaB182
CmaCh12G004740	Cucumber (Gy14) v1	cgycmaB0638
CmaCh12G004740	Cucurbita moschata (Rifu)	cmacmoB165
CmaCh12G004740	Cucurbita moschata (Rifu)	cmacmoB183
CmaCh12G004740	Wild cucumber (PI 183967)	cmacpiB175
CmaCh12G004740	Cucumber (Chinese Long) v2	cmacuB174
CmaCh12G004740	Melon (DHL92) v3.5.1	cmameB156
CmaCh12G004740	Melon (DHL92) v3.5.1	cmameB167
CmaCh12G004740	Watermelon (Charleston Gray)	cmawcgB160
CmaCh12G004740	Watermelon (Charleston Gray)	cmawcgB169
CmaCh12G004740	Watermelon (97103) v1	cmawmB148
CmaCh12G004740	Watermelon (97103) v1	cmawmB159