Carg04055 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04055
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RADIALIS-like
Location	Cucurbita_argyrosperma_scaffold_011 : 1606405 .. 1606736 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCTGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGGTTAATCTCTTTCTCTATTCGATGTATTTCGAAATTACTTTTTATCGTTTGAGCGTTTGA

mRNA sequence

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCTGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGCGTTTGA

Coding sequence (CDS)

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCTGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGCGTTTGA

Protein sequence

MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV

Homology

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: XP_022951876.1 (protein RADIALIS-like 4, partial [Cucurbita moschata])

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          WSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL
Sbjct: 14 WSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 73

Query: 76 PNYSNSSNQYYSNEQ 91
          PNYSNSS+QYYSNEQ
Sbjct: 74 PNYSNSSDQYYSNEQ 88

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: XP_023537868.1 (protein RADIALIS-like 4, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 4.0e-34
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          WSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL
Sbjct: 13 WSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 72

Query: 76 PNYSNSSNQYYSNEQ 91
          PNYSNSSNQ YSNEQ
Sbjct: 73 PNYSNSSNQCYSNEQ 87

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: XP_023002559.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          WS KQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL
Sbjct: 14 WSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 73

Query: 76 PNYSNSSNQYYSN 89
          PNYSNSS QYYSN
Sbjct: 74 PNYSNSSKQYYSN 86

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: XP_022997502.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 8.1e-27
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          WS KQNKVFENALT+YDKDSPDRWQK+A +VGGKTAEEVKRHYEMLVEDVHNIE GR+PL
Sbjct: 13 WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPL 72

Query: 76 PNYSNSSNQYYSN 89
          PNYS  S    SN
Sbjct: 73 PNYSKPSKHCSSN 85

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: XP_022962285.1 (protein RADIALIS-like 6 [Cucurbita moschata])

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-25
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 19 KQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNY 78
          KQNKVFENALT+YDKDSPDRWQK+A +VGGKTAEEVKRHYEMLVEDVHNIE GR+PLPNY
Sbjct: 15 KQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY 74

Query: 79 SNSSNQ 85
          S  S Q
Sbjct: 75 STPSKQ 80

[Close]

BLAST of Carg04055 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 103.2 bits (256), Expect = 8.7e-23
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+ NIE GR+PL
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 76 PNYSNSSNQYYSNEQSV 93
          PNY      + SN +S+
Sbjct: 72 PNYKT----FESNSRSI 84

[Close]

BLAST of Carg04055 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-21
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+ KQNK FE AL  YD+D+P+RWQ VA  VGGKT EEVKRHYE+LV+D+++IE G +P 
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 76 PNYSNS 82
          PNY  S
Sbjct: 74 PNYRTS 79

[Close]

BLAST of Carg04055 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 97.1 bits (240), Expect = 6.2e-21
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+ KQNK+FE AL +YDKD+PDRWQ VA AVG K+AEEVKRHY++LVED+ NIE   +PL
Sbjct: 12 WTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPL 71

Query: 76 PNY 79
          P Y
Sbjct: 72 PKY 74

[Close]

BLAST of Carg04055 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 93.6 bits (231), Expect = 6.9e-20
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+ +++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV++IE GR P 
Sbjct: 11 WTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQ 70

Query: 76 PNYSNSS 83
          P Y N++
Sbjct: 71 PRYRNTN 77

[Close]

BLAST of Carg04055 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 4.4e-19
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+ KQNK FE AL +YD+D+PDRW  VA AVGGKT EE KR Y++LV D+ +IE G +P 
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 76 PNYSNSS 83
          P+Y  ++
Sbjct: 74 PDYKTTT 80

[Close]

BLAST of Carg04055 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+ NIE GR+PL
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 76 PNYSNSSNQYYSNEQSV 93
          PNY      + SN +S+
Sbjct: 72 PNYKT----FESNSRSI 84

[Close]

BLAST of Carg04055 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-20
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+ KQNK FE AL  YD+D+P+RWQ VA  VGGKT EEVKRHYE+LV+D+++IE G +P 
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 76 PNYSNS 82
          PNY  S
Sbjct: 74 PNYRTS 79

[Close]

BLAST of Carg04055 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-20
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+ K+NK+FE AL  YD+D+PDRW  VA AVGGK+AEEV+RHYE+L+ DV++IE GR P 
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71

Query: 76 PNYSNSSNQY 86
          PNY ++ N +
Sbjct: 72 PNYRSNGNNH 81

[Close]

BLAST of Carg04055 vs. Swiss-Prot
Match: sp|Q8GW75|RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-19
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+ KQNK+FE AL +YDKD+PDRWQ VA AVG K+AEEVKRHY++LVED+ NIE   +PL
Sbjct: 12 WTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPL 71

Query: 76 PNY 79
          P Y
Sbjct: 72 PKY 74

[Close]

BLAST of Carg04055 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-19
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          WS K+NK FE AL +YDKD+PDRW  VA AV G+T EEVK+HYE+LVED+  IE G++P 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 76 PNYSNSSNQYYSNEQ 91
          PNY  +     ++E+
Sbjct: 71 PNYRTTGGNMKTDEK 85

[Close]

BLAST of Carg04055 vs. TrEMBL
Match: tr|A0A1S3BBR2|A0A1S3BBR2_CUCME (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-23
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 21 NKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSN 80
          NK+FENALT+YDKDSPDRWQK+A AVGGKTA+EVKRHYEMLVEDVHNIE G++PLPNYS 
Sbjct: 21 NKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK 80

Query: 81 --SSNQYYSNEQ 91
            S N +   EQ
Sbjct: 81 HYSYNNFLDEEQ 92

[Close]

BLAST of Carg04055 vs. TrEMBL
Match: tr|A0A0A0LNL9|A0A0A0LNL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 21 NKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYS- 80
          NK+FENALT+YDKDSPDRWQK+A AVGGKTA+EVKRHYEMLVEDVHNIE G++PLPNYS 
Sbjct: 21 NKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK 80

Query: 81 --NSSNQYYSNEQ 91
            + +N +   EQ
Sbjct: 81 HYSYNNNFVDEEQ 93

[Close]

BLAST of Carg04055 vs. TrEMBL
Match: tr|A0A2P4IR98|A0A2P4IR98_QUESU (Isoform 2 of protein radialis-like 6 OS=Quercus suber OX=58331 GN=CFP56_57090 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-22
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+PKQNK FE AL LYDKD+PDRWQ VA AVGGK+AEEV+RHYE+L++D+ NIE G+IPL
Sbjct: 15 WTPKQNKQFERALALYDKDTPDRWQNVAKAVGGKSAEEVRRHYEILIQDLINIEAGQIPL 74

Query: 76 PNYSNSSN 84
          PNY NS N
Sbjct: 75 PNYKNSGN 82

[Close]

BLAST of Carg04055 vs. TrEMBL
Match: tr|A0A2P5EDI4|A0A2P5EDI4_9ROSA (Octamer-binding transcription factor OS=Trema orientalis OX=63057 GN=TorRG33x02_206470 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.2e-22
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+ KQNK+FENAL +YDKD+PDRW  +A AVGGKT EEVKRHYEMLVEDV+ IE G+IPL
Sbjct: 6  WTAKQNKLFENALAIYDKDTPDRWHNMARAVGGKTVEEVKRHYEMLVEDVNKIETGQIPL 65

Query: 76 PNYSNSSNQYYS 88
          PNY   +N+ Y+
Sbjct: 66 PNYRKINNKAYN 77

[Close]

BLAST of Carg04055 vs. TrEMBL
Match: tr|A0A2P6RMC3|A0A2P6RMC3_ROSCH (Putative transcription factor MYB/SANT family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0101281 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.2e-22
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 16 WSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPL 75
          W+PKQNK FE AL LYDKD+PDRWQKVA AVGGK+AEEVKRHYE+L+EDV +IE GRIP 
Sbjct: 15 WTPKQNKQFEKALALYDKDTPDRWQKVARAVGGKSAEEVKRHYEILIEDVKHIESGRIPY 74

Query: 76 PNYSNS 82
          P+Y NS
Sbjct: 75 PDYRNS 80

The following BLAST results are available for this feature:

BLAST of Carg04055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951876.1	1.4e-34	96.00	protein RADIALIS-like 4, partial [Cucurbita moschata]	[more]
XP_023537868.1	4.0e-34	96.00	protein RADIALIS-like 4, partial [Cucurbita pepo subsp. pepo]	[more]
XP_023002559.1	1.7e-32	94.52	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
XP_022997502.1	8.1e-27	82.19	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
XP_022962285.1	2.6e-25	86.36	protein RADIALIS-like 6 [Cucurbita moschata]	[more]

BLAST of Carg04055 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75250.1	8.7e-23	62.34	RAD-like 6	[more]
AT4G39250.1	2.1e-21	63.64	RAD-like 1	[more]
AT1G19510.1	6.2e-21	68.25	RAD-like 5	[more]
AT2G18328.1	6.9e-20	59.70	RAD-like 4	[more]
AT2G21650.1	4.4e-19	56.72	Homeodomain-like superfamily protein	[more]

BLAST of Carg04055 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1A173\|RADL6_ARATH	1.6e-21	62.34	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	3.8e-20	63.64	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q6NNN0\|RADL3_ARATH	3.8e-20	60.00	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
sp\|Q8GW75\|RADL5_ARATH	1.1e-19	68.25	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
sp\|Q58FS3\|RAD_ANTMA	2.5e-19	56.00	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Carg04055 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBR2\|A0A1S3BBR2_CUCME	4.7e-23	76.39	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1	[more]
tr\|A0A0A0LNL9\|A0A0A0LNL9_CUCSA	1.0e-22	73.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 SV=1	[more]
tr\|A0A2P4IR98\|A0A2P4IR98_QUESU	2.3e-22	73.53	Isoform 2 of protein radialis-like 6 OS=Quercus suber OX=58331 GN=CFP56_57090 PE...	[more]
tr\|A0A2P5EDI4\|A0A2P5EDI4_9ROSA	5.2e-22	69.44	Octamer-binding transcription factor OS=Trema orientalis OX=63057 GN=TorRG33x02_...	[more]
tr\|A0A2P6RMC3\|A0A2P6RMC3_ROSCH	5.2e-22	77.27	Putative transcription factor MYB/SANT family OS=Rosa chinensis OX=74649 GN=Rchi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04055-RA	Carg04055-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.0E-6 score: 37.4
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..61 e-value: 1.3E-6 score: 28.4
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 24..62 e-value: 2.2005E-4 score: 33.703
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 6..75 e-value: 2.9E-21 score: 77.0
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 11..85
None	No IPR available	PANTHER	PTHR43952:SF5	SUBFAMILY NOT NAMED	coord: 11..85
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 14..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04055	Csa2G361640	Cucumber (Chinese Long) v2	carcuB0989
Carg04055	MELO3C010942	Melon (DHL92) v3.5.1	carmeB0953
Carg04055	MELO3C012498	Melon (DHL92) v3.5.1	carmeB0952
Carg04055	ClCG08G015090	Watermelon (Charleston Gray)	carwcgB0958
Carg04055	CSPI02G20030	Wild cucumber (PI 183967)	carcpiB1012
Carg04055	Cucsa.232170	Cucumber (Gy14) v1	carcgyB1094
Carg04055	CmaCh12G004740	Cucurbita maxima (Rimu)	carcmaB1349
Carg04055	CmaCh05G002390	Cucurbita maxima (Rimu)	carcmaB1357
Carg04055	CmoCh05G002460	Cucurbita moschata (Rifu)	carcmoB1319
Carg04055	CmoCh12G004240	Cucurbita moschata (Rifu)	carcmoB1310
Carg04055	Lsi11G011110	Bottle gourd (USVL1VR-Ls)	carlsiB891
Carg04055	Lsi08G013960	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg04055	Cp4.1LG07g04080	Cucurbita pepo (Zucchini)	carcpeB1368
Carg04055	Cp4.1LG11g01910	Cucurbita pepo (Zucchini)	carcpeB1352
Carg04055	CsGy2G019780	Cucumber (Gy14) v2	carcgybB0962
Carg04055	MELO3C010942.2	Melon (DHL92) v3.6.1	carmedB0959
Carg04055	MELO3C012498.2	Melon (DHL92) v3.6.1	carmedB0958
Carg04055	CsaV3_2G028700	Cucumber (Chinese Long) v3	carcucB1017
Carg04055	Cla97C05G100450	Watermelon (97103) v2	carwmbB1029
Carg04055	Bhi04G000222	Wax gourd	carwgoB1143

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04055	Carg11802	Silver-seed gourd	carcarB227
Carg04055	Carg17147	Silver-seed gourd	carcarB647

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04055	Silver-seed gourd	carcarB126
Carg04055	Silver-seed gourd	carcarB430
Carg04055	Silver-seed gourd	carcarB604
Carg04055	Cucumber (Gy14) v2	carcgybB0966
Carg04055	Cucumber (Gy14) v2	carcgybB0969
Carg04055	Cucumber (Gy14) v1	carcgyB1098
Carg04055	Cucurbita maxima (Rimu)	carcmaB1345
Carg04055	Cucurbita maxima (Rimu)	carcmaB1352
Carg04055	Cucurbita maxima (Rimu)	carcmaB1360
Carg04055	Cucurbita moschata (Rifu)	carcmoB1307
Carg04055	Cucurbita moschata (Rifu)	carcmoB1314
Carg04055	Cucurbita moschata (Rifu)	carcmoB1317
Carg04055	Cucurbita moschata (Rifu)	carcmoB1321
Carg04055	Cucurbita pepo (Zucchini)	carcpeB1350
Carg04055	Cucurbita pepo (Zucchini)	carcpeB1358
Carg04055	Cucurbita pepo (Zucchini)	carcpeB1361
Carg04055	Cucurbita pepo (Zucchini)	carcpeB1362
Carg04055	Cucurbita pepo (Zucchini)	carcpeB1365
Carg04055	Wild cucumber (PI 183967)	carcpiB1015
Carg04055	Wild cucumber (PI 183967)	carcpiB1019
Carg04055	Cucumber (Chinese Long) v2	carcuB0992
Carg04055	Cucumber (Chinese Long) v2	carcuB0996
Carg04055	Cucumber (Chinese Long) v3	carcucB1020
Carg04055	Bottle gourd (USVL1VR-Ls)	carlsiB892
Carg04055	Bottle gourd (USVL1VR-Ls)	carlsiB894
Carg04055	Melon (DHL92) v3.5.1	carmeB0956
Carg04055	Melon (DHL92) v3.5.1	carmeB0960
Carg04055	Melon (DHL92) v3.6.1	carmedB0962
Carg04055	Melon (DHL92) v3.6.1	carmedB0966
Carg04055	Watermelon (Charleston Gray)	carwcgB0952
Carg04055	Watermelon (Charleston Gray)	carwcgB0953
Carg04055	Watermelon (Charleston Gray)	carwcgB0954
Carg04055	Watermelon (97103) v1	carwmB0978
Carg04055	Watermelon (97103) v1	carwmB0981
Carg04055	Watermelon (97103) v1	carwmB0984
Carg04055	Watermelon (97103) v1	carwmB0985
Carg04055	Watermelon (97103) v2	carwmbB1027
Carg04055	Watermelon (97103) v2	carwmbB1034