CmoCh12G003010 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G003010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionStress induced protein
LocationCmo_Chr12 : 1885816 .. 1886298 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTTTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAAACCTTTCGGTTGGAGGAGAGAGGATCTAACCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGACCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTGTAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGATGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAATAGAAGCGAGATATGA

mRNA sequence

ATGGCGTCTTTTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAAACCTTTCGGTTGGAGGAGAGAGGATCTAACCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGACCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTGTAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGATGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAATAGAAGCGAGATATGA

Coding sequence (CDS)

ATGGCGTCTTTTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAAACCTTTCGGTTGGAGGAGAGAGGATCTAACCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGACCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTGTAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGATGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAATAGAAGCGAGATATGA
Homology
[Close]
BLAST of CmoCh12G003010 vs. TrEMBL
Match: A0A0A0LPP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382480 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-32
Identity = 95/161 (59.01%), Postives = 110/161 (68.32%), Query Frame = 1 

Query: 2   ASFSSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGPRLSRNSSVRCR 61
           +S SSSSSSS ID T R EE       E+   +VGVSYSS G FFGF  RLSR   VR  
Sbjct: 3   SSSSSSSSSSPIDGTLRSEEG------EDLRDQVGVSYSSCGCFFGFRSRLSR---VRGG 62

Query: 62  YVSLQTPQNDEEV--NQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDPR 121
           Y+ LQ+ +  EEV  +QSWMM KVKR  EI+KA+A  KWRS INGI+NKRRSVRFQYDPR
Sbjct: 63  YLPLQSNRKTEEVKQHQSWMMTKVKRLNEIIKAVAGRKWRSLINGIINKRRSVRFQYDPR 122

Query: 122 SYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 161
           SYALNFD GI E+     RH     +  P+GLGI MNR++I
Sbjct: 123 SYALNFDEGIEEE----ARH-----TLHPIGLGIGMNRNQI 145

[Close]
BLAST of CmoCh12G003010 vs. TrEMBL
Match: B9HAI6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27550g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1 

Query: 32  DLEVGVSYSSSGGFFGFGPRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIVK 91
           D E  V+ S  G F GF  R  R SS      +L   Q +  +   W+++KVKR +EI +
Sbjct: 18  DYEEAVTSSCCGCFQGFCCRPRRGSSNGMER-NLMLKQEEVTIKDGWLVEKVKRVKEISE 77

Query: 92  AMARSKWRSFINGIVN---KRRSVRFQYDPRSYALNFDHGIGED 133
            +A  KW++FI    N   KR  ++ QYDP+SYALNFD G G +
Sbjct: 78  ILAGPKWKNFIRRFSNNNKKRSRMQCQYDPQSYALNFDEGFGRE 120

[Close]
BLAST of CmoCh12G003010 vs. TrEMBL
Match: A0A0A0LTG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G265630 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-08
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 1 

Query: 28  EEESDLEVGVSYSSSGGF--FGFGPRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKR 87
           ++  D++  +S +  G F  FGFG   +RN         LQ  Q  EE  +SWM+K++K+
Sbjct: 21  DDLQDIDDSISSNGCGCFQLFGFGSNRNRNYEGGNL---LQQKQGREE--ESWMVKRLKK 80

Query: 88  FEEIVKAMARSKWRSFING----IVNKRRSVRFQYDPRSYALNFDHGIGEDGGGGGRHGY 147
             E+ + +A  KW++FI      +  K+   RFQYDP SYALNFD         GG  G 
Sbjct: 81  VREVSEMVAGPKWKNFIRKMGGYLKGKKERNRFQYDPESYALNFD---------GGFDGE 139

Query: 148 SPPSEPPMGLGIR 155
                PP+G   R
Sbjct: 141 EDDHHPPIGFSSR 139

[Close]
BLAST of CmoCh12G003010 vs. TrEMBL
Match: M5XFG2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012789mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 36/102 (35.29%), Postives = 55/102 (53.92%), Query Frame = 1 

Query: 29  EESDLEVGVSYSSSGGFFGFGPRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEE 88
           ++ D E     SS G  +GF  R  R  S       L   Q  ++V ++W+++  K+  E
Sbjct: 23  DDFDEEEIAPSSSCGCLWGFYFRALRGRSNIGTQRYLLQQQGGDQVKENWLVENAKKVRE 82

Query: 89  IVKAMARSKWRSFINGI--VNKRRSVRFQYDPRSYALNFDHG 129
             + +A  KW++FI     + K+R V+FQYD +SYALNFD G
Sbjct: 83  FSEVLAGPKWKNFIRSFSTIYKKRRVQFQYDLQSYALNFDDG 124

[Close]
BLAST of CmoCh12G003010 vs. TrEMBL
Match: A0A067KEV6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07119 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 1 

Query: 52  LSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIVKAMARSKWRSFIN-------- 111
           L RNS+   RY+ L   Q + +  +SW+++K K+ +EI + +A  KW++FI         
Sbjct: 46  LKRNSNGSRRYL-LGRKQEEIDNKESWVVEKAKKVKEISEVLAGPKWKNFIRRCSSVHGY 105

Query: 112 GIVNKRRS-VRFQYDPRSYALNFDHGIG---EDGGGGGRHGYSPP 145
           G  +K+ S +++QYDP+SYALNFD GI    ED   G    Y+ P
Sbjct: 106 GFCSKKTSKMQYQYDPQSYALNFDDGIDKELEDSFPGFSARYATP 149

[Close]
BLAST of CmoCh12G003010 vs. NCBI nr
Match: gi|659088944|ref|XP_008445245.1| (PREDICTED: uncharacterized protein LOC103488331 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.3e-35
Identity = 101/164 (61.59%), Postives = 115/164 (70.12%), Query Frame = 1 

Query: 2   ASFSSSSSSSAIDETFRLEERGSNRIEEESDL---EVG-VSYSSSGGFFGFGPRLSRNSS 61
           +S SSSSSSSAID T R E+   +RIEE  DL   EVG  SYSS G FFGFG RLSR   
Sbjct: 3   SSSSSSSSSSAIDGTLRSED---DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR--- 62

Query: 62  VRCRYVSLQTPQNDEEVNQ-SWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQY 121
           VR  Y+ LQ+ +  EEV Q SWMM+KVKR  EI+KAMA  KWRS INGI+NKRRSVRFQY
Sbjct: 63  VRGGYLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRFQY 122

Query: 122 DPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 161
           DPRSYALNFD G+ E+G           S  P+GLGI MNR++I
Sbjct: 123 DPRSYALNFDEGMEEEG---------RRSLQPIGLGIGMNRNQI 151

[Close]
BLAST of CmoCh12G003010 vs. NCBI nr
Match: gi|778672598|ref|XP_011649836.1| (PREDICTED: uncharacterized protein LOC105434671 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 95/161 (59.01%), Postives = 110/161 (68.32%), Query Frame = 1 

Query: 2   ASFSSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGPRLSRNSSVRCR 61
           +S SSSSSSS ID T R EE       E+   +VGVSYSS G FFGF  RLSR   VR  
Sbjct: 3   SSSSSSSSSSPIDGTLRSEEG------EDLRDQVGVSYSSCGCFFGFRSRLSR---VRGG 62

Query: 62  YVSLQTPQNDEEV--NQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDPR 121
           Y+ LQ+ +  EEV  +QSWMM KVKR  EI+KA+A  KWRS INGI+NKRRSVRFQYDPR
Sbjct: 63  YLPLQSNRKTEEVKQHQSWMMTKVKRLNEIIKAVAGRKWRSLINGIINKRRSVRFQYDPR 122

Query: 122 SYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 161
           SYALNFD GI E+     RH     +  P+GLGI MNR++I
Sbjct: 123 SYALNFDEGIEEE----ARH-----TLHPIGLGIGMNRNQI 145

[Close]
BLAST of CmoCh12G003010 vs. NCBI nr
Match: gi|764548446|ref|XP_011459812.1| (PREDICTED: uncharacterized protein LOC105350107 [Fragaria vesca subsp. vesca])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1 

Query: 37  VSYSSSGGFFGFGPRL----SRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIVKA 96
           V  SS G F+G   R+      N+ +R RY+     Q  E   +SW+++ VK+  E+ + 
Sbjct: 21  VQTSSCGCFWGLYSRVVPCGRNNNGIRGRYLL----QQGEVARESWLVQNVKKVRELSEV 80

Query: 97  MARSKWRSFINGI--VNKRRSVRFQYDPRSYALNFDHGIGED 133
           +A  KW++FI  I  + K+R V+ QYDP+SYALNFD G+G +
Sbjct: 81  LAGPKWKNFIRSIGSIYKKRRVQAQYDPQSYALNFDDGVGRE 118

[Close]
BLAST of CmoCh12G003010 vs. NCBI nr
Match: gi|224089316|ref|XP_002308687.1| (hypothetical protein POPTR_0006s27550g [Populus trichocarpa])

HSP 1 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1 

Query: 32  DLEVGVSYSSSGGFFGFGPRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIVK 91
           D E  V+ S  G F GF  R  R SS      +L   Q +  +   W+++KVKR +EI +
Sbjct: 18  DYEEAVTSSCCGCFQGFCCRPRRGSSNGMER-NLMLKQEEVTIKDGWLVEKVKRVKEISE 77

Query: 92  AMARSKWRSFINGIVN---KRRSVRFQYDPRSYALNFDHGIGED 133
            +A  KW++FI    N   KR  ++ QYDP+SYALNFD G G +
Sbjct: 78  ILAGPKWKNFIRRFSNNNKKRSRMQCQYDPQSYALNFDEGFGRE 120

[Close]
BLAST of CmoCh12G003010 vs. NCBI nr
Match: gi|659086372|ref|XP_008443900.1| (PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1 

Query: 28  EEESDLEVGVSYSSSGGF--FGFGPRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKR 87
           ++  D++  +S +  G F  FGFG   +RN         LQ  Q  EE  +SWM+KK+K+
Sbjct: 22  DDLQDIDDSISSNGCGCFQLFGFGSNRNRNYEGANL---LQQKQGREE--ESWMVKKLKK 81

Query: 88  FEEIVKAMARSKWRSFING----IVNKRRSVRFQYDPRSYALNFDHGIGEDGGGGGRHGY 147
            +E+ + +A  KW++FI      +  K++  RFQYDP SYALNFD         GG  G 
Sbjct: 82  VKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYALNFD---------GGFDGE 140

Query: 148 SPPSEPPMGLGIR 155
                PP+G   R
Sbjct: 142 EDDHHPPIGFSSR 140

The following BLAST results are available for this feature:
BLAST of CmoCh12G003010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G003010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPP6_CUCSA1.4e-3259.01Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382480 PE=4 SV=1[more]
B9HAI6_POPTR3.6e-0940.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27550g PE=4 SV=1[more]
A0A0A0LTG0_CUCSA5.3e-0835.34Uncharacterized protein OS=Cucumis sativus GN=Csa_1G265630 PE=4 SV=1[more]
M5XFG2_PRUPE2.2e-0635.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012789mg PE=4 SV=1[more]
A0A067KEV6_JATCU3.8e-0638.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07119 PE=4 SV=1[more]
BLAST of CmoCh12G003010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G003010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088944|ref|XP_008445245.1|3.3e-3561.59PREDICTED: uncharacterized protein LOC103488331 [Cucumis melo][more]
gi|778672598|ref|XP_011649836.1|2.0e-3259.01PREDICTED: uncharacterized protein LOC105434671 [Cucumis sativus][more]
gi|764548446|ref|XP_011459812.1|1.4e-0939.22PREDICTED: uncharacterized protein LOC105350107 [Fragaria vesca subsp. vesca][more]
gi|224089316|ref|XP_002308687.1|5.2e-0940.38hypothetical protein POPTR_0006s27550g [Populus trichocarpa][more]
gi|659086372|ref|XP_008443900.1|1.5e-0836.09PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G003010.1CmoCh12G003010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G003010Cucsa.162650Cucumber (Gy14) v1cgycmoB0448
CmoCh12G003010Cla022346Watermelon (97103) v1cmowmB134
CmoCh12G003010Csa2G382480Cucumber (Chinese Long) v2cmocuB149
CmoCh12G003010MELO3C011280Melon (DHL92) v3.5.1cmomeB151
CmoCh12G003010ClCG08G013540Watermelon (Charleston Gray)cmowcgB161
CmoCh12G003010CSPI02G23750Wild cucumber (PI 183967)cmocpiB150
CmoCh12G003010Lsi08G012280Bottle gourd (USVL1VR-Ls)cmolsiB175
CmoCh12G003010Cp4.1LG07g03000Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G003010Cp4.1LG11g03330Cucurbita pepo (Zucchini)cmocpeB154
CmoCh12G003010MELO3C011280.2Melon (DHL92) v3.6.1cmomedB167
CmoCh12G003010CsaV3_2G032300Cucumber (Chinese Long) v3cmocucB0176
CmoCh12G003010Cla97C08G156940Watermelon (97103) v2cmowmbB178
CmoCh12G003010Bhi04G000019Wax gourdcmowgoB0191
CmoCh12G003010Carg09348Silver-seed gourdcarcmoB0192
CmoCh12G003010Carg03941Silver-seed gourdcarcmoB1310
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G003010Bottle gourd (USVL1VR-Ls)cmolsiB164
CmoCh12G003010Cucumber (Gy14) v2cgybcmoB160
CmoCh12G003010Cucumber (Gy14) v2cgybcmoB451
CmoCh12G003010Cucumber (Gy14) v2cgybcmoB889
CmoCh12G003010Melon (DHL92) v3.6.1cmomedB187
CmoCh12G003010Silver-seed gourdcarcmoB0280
CmoCh12G003010Silver-seed gourdcarcmoB0869
CmoCh12G003010Silver-seed gourdcarcmoB0912
CmoCh12G003010Cucumber (Chinese Long) v3cmocucB0201
CmoCh12G003010Cucumber (Chinese Long) v3cmocucB0202
CmoCh12G003010Watermelon (97103) v2cmowmbB177
CmoCh12G003010Watermelon (97103) v2cmowmbB169
CmoCh12G003010Wax gourdcmowgoB0217
CmoCh12G003010Cucurbita moschata (Rifu)cmocmoB006
CmoCh12G003010Cucurbita moschata (Rifu)cmocmoB142
CmoCh12G003010Cucurbita moschata (Rifu)cmocmoB156
CmoCh12G003010Cucumber (Gy14) v1cgycmoB0745
CmoCh12G003010Cucurbita maxima (Rimu)cmacmoB035
CmoCh12G003010Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G003010Cucurbita maxima (Rimu)cmacmoB455
CmoCh12G003010Cucurbita maxima (Rimu)cmacmoB770
CmoCh12G003010Wild cucumber (PI 183967)cmocpiB173
CmoCh12G003010Cucumber (Chinese Long) v2cmocuB170
CmoCh12G003010Melon (DHL92) v3.5.1cmomeB170
CmoCh12G003010Watermelon (Charleston Gray)cmowcgB153
CmoCh12G003010Cucurbita pepo (Zucchini)cmocpeB167
CmoCh12G003010Cucurbita pepo (Zucchini)cmocpeB173