Carg03941 (gene) Silver-seed gourd

Overview
NameCarg03941
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionStress induced protein
LocationCucurbita_argyrosperma_scaffold_011 : 891642 .. 892124 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCGATTGATGAAACCATTCGGTTGGAGGAGAGAGGATCTAATCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGATCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTATAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGACGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAGAAGCGAGATATGA

mRNA sequence

ATGGCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCGATTGATGAAACCATTCGGTTGGAGGAGAGAGGATCTAATCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGATCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTATAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGACGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAGAAGCGAGATATGA

Coding sequence (CDS)

ATGGCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCGATTGATGAAACCATTCGGTTGGAGGAGAGAGGATCTAATCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGATCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTATAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGACGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAGAAGCGAGATATGA

Protein sequence

MASSSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMRSEI
Homology
[Close]
BLAST of Carg03941 vs. NCBI nr
Match: XP_023537514.1 (uncharacterized protein LOC111798530 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.6 bits (714), Expect = 6.5e-72
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 15  DETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRCRYVSLQTPQNDEE 74
           DET RLEERGSNRIEEESDLEVGVSYSS GGFFGFGSRLSR+SSVRCRYVSLQT QNDEE
Sbjct: 11  DETFRLEERGSNRIEEESDLEVGVSYSSCGGFFGFGSRLSRSSSVRCRYVSLQTQQNDEE 70

Query: 75  VNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGEDG 134
           VNQSWMMKKVKRFEEI+KAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGEDG
Sbjct: 71  VNQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGEDG 130

Query: 135 GGGGRHGYSPPSEPPMGLGIRM-RSEI 161
           GGGGRHGYSPPSEPPMGLGIRM RSEI
Sbjct: 131 GGGGRHGYSPPSEPPMGLGIRMNRSEI 157

[Close]
BLAST of Carg03941 vs. NCBI nr
Match: XP_023002532.1 (uncharacterized protein LOC111496346 [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 137/148 (92.57%), Postives = 139/148 (93.92%), Query Frame = 0 

Query: 15  DETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRCRYVSLQTP-QNDE 74
           DET RLEERGSNRIEEESDLEVGVSYSSSGGFF FGS LSR+SSVRCRYVSLQ   QNDE
Sbjct: 13  DETFRLEERGSNRIEEESDLEVGVSYSSSGGFFEFGSWLSRSSSVRCRYVSLQAQRQNDE 72

Query: 75  EVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGED 134
           EVNQSWMMKKVKRFEEII+AMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGED
Sbjct: 73  EVNQSWMMKKVKRFEEIIQAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGED 132

Query: 135 GGGGGRHGYSPPSEPPMGLGIRM-RSEI 161
           G GGGRHGYSPPSE PMGLGIRM RSEI
Sbjct: 133 GSGGGRHGYSPPSESPMGLGIRMNRSEI 160

[Close]
BLAST of Carg03941 vs. NCBI nr
Match: XP_022997532.1 (uncharacterized protein LOC111492425 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 8.2e-43
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0 

Query: 15  DETIRLEE-RGSNRIEEESDL-----EVGVSYSSSGGFFGFGSRLSRNSSVRCRYVSLQT 74
           DE  R EE R  +RIEE +D      EVGVSYSS G FFGFGSRLSR+SSVRCRY+ L  
Sbjct: 9   DEISRSEEIRAPDRIEEGNDRDLDLDEVGVSYSSCGCFFGFGSRLSRSSSVRCRYLLL-- 68

Query: 75  PQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDH 134
            + +EEV QSWMMKKVKRF++IIKAMA  KWRSFINGIVNKRRSVRFQYDPRSYALNFD 
Sbjct: 69  -RENEEVKQSWMMKKVKRFKDIIKAMAGRKWRSFINGIVNKRRSVRFQYDPRSYALNFDE 128

Query: 135 GIGEDGGGGGRHGYSPPSEPPMG 152
           G+GE+ GGGGRHG+  P   P+G
Sbjct: 129 GMGEEEGGGGRHGFRQPFASPIG 148

[Close]
BLAST of Carg03941 vs. NCBI nr
Match: XP_022131993.1 (uncharacterized protein LOC111004972 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42
Identity = 99/149 (66.44%), Postives = 120/149 (80.54%), Query Frame = 0 

Query: 15  DETIRLEERGSNRIEEESDLEVGV-SYSSSGGFFGFGSRLSRNS-SVRCRYVSLQTPQND 74
           DET+R     ++RIEE+ D EVGV SYSS G FFGFGSR +R+S  VRCRY+ LQ   ++
Sbjct: 14  DETLR-----TDRIEEDDDREVGVSSYSSCGCFFGFGSRQARSSDGVRCRYLPLQ--PHE 73

Query: 75  EEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGE 134
           ++V QSWMMKKVKRF+EIIKA+A  KWRSFI+GI++K+RSVRFQYDPRSYALNFD G GE
Sbjct: 74  DQVKQSWMMKKVKRFKEIIKAVAGRKWRSFISGIISKKRSVRFQYDPRSYALNFDEGSGE 133

Query: 135 DGGGGGRHGYSPPSEPPMGLGIRM-RSEI 161
           DGGG GRHG+  PS  P+GLGI M RS++
Sbjct: 134 DGGGSGRHGFRAPSATPIGLGIGMNRSQV 155

[Close]
BLAST of Carg03941 vs. NCBI nr
Match: XP_008445245.1 (PREDICTED: uncharacterized protein LOC103488331 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 103/161 (63.98%), Postives = 114/161 (70.81%), Query Frame = 0 

Query: 1   MASXXXXXXXXXXXDETIRLEERGSNRIEEESDL---EV-GVSYSSSGGFFGFGSRLSRN 60
           MASXXXXXXXXXX D T+R E+   +RIEE  DL   EV G SYSS G FFGFGSRLSR 
Sbjct: 1   MASXXXXXXXXXXIDGTLRSED---DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR- 60

Query: 61  SSVRCRYVSLQTPQNDEEV-NQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRF 120
             VR  Y+ LQ+ +  EEV  QSWMM+KVKR  EIIKAMA  KWRS INGI+NKRRSVRF
Sbjct: 61  --VRGGYLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRF 120

Query: 121 QYDPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM 157
           QYDPRSYALNFD G+ E+G           S  P+GLGI M
Sbjct: 121 QYDPRSYALNFDEGMEEEG---------RRSLQPIGLGIGM 146

[Close]
BLAST of Carg03941 vs. TrEMBL
Match: tr|A0A1S3BC68|A0A1S3BC68_CUCME (uncharacterized protein LOC103488331 OS=Cucumis melo OX=3656 GN=LOC103488331 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 103/161 (63.98%), Postives = 114/161 (70.81%), Query Frame = 0 

Query: 1   MASXXXXXXXXXXXDETIRLEERGSNRIEEESDL---EV-GVSYSSSGGFFGFGSRLSRN 60
           MASXXXXXXXXXX D T+R E+   +RIEE  DL   EV G SYSS G FFGFGSRLSR 
Sbjct: 1   MASXXXXXXXXXXIDGTLRSED---DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR- 60

Query: 61  SSVRCRYVSLQTPQNDEEV-NQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRF 120
             VR  Y+ LQ+ +  EEV  QSWMM+KVKR  EIIKAMA  KWRS INGI+NKRRSVRF
Sbjct: 61  --VRGGYLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRF 120

Query: 121 QYDPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM 157
           QYDPRSYALNFD G+ E+G           S  P+GLGI M
Sbjct: 121 QYDPRSYALNFDEGMEEEG---------RRSLQPIGLGIGM 146

[Close]
BLAST of Carg03941 vs. TrEMBL
Match: tr|A0A0A0LPP6|A0A0A0LPP6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382480 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.9e-29
Identity = 85/137 (62.04%), Postives = 96/137 (70.07%), Query Frame = 0 

Query: 24  GSNRIEEESDL--EVGVSYSSSGGFFGFGSRLSRNSSVRCRYVSLQTPQNDEEV--NQSW 83
           G+ R EE  DL  +VGVSYSS G FFGF SRLSR   VR  Y+ LQ+ +  EEV  +QSW
Sbjct: 16  GTLRSEEGEDLRDQVGVSYSSCGCFFGFRSRLSR---VRGGYLPLQSNRKTEEVKQHQSW 75

Query: 84  MMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGEDGGGGGR 143
           MM KVKR  EIIKA+A  KWRS INGI+NKRRSVRFQYDPRSYALNFD GI E+     R
Sbjct: 76  MMTKVKRLNEIIKAVAGRKWRSLINGIINKRRSVRFQYDPRSYALNFDEGIEEE----AR 135

Query: 144 HGYSPPSEPPMGLGIRM 157
           H     +  P+GLGI M
Sbjct: 136 H-----TLHPIGLGIGM 140

[Close]
BLAST of Carg03941 vs. TrEMBL
Match: tr|B9HAI6|B9HAI6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G259300v3 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 0 

Query: 33  DLEVGVSYSSSGGFFGFGSRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIK 92
           D E  V+ S  G F GF  R  R SS      +L   Q +  +   W+++KVKR +EI +
Sbjct: 18  DYEEAVTSSCCGCFQGFCCRPRRGSSNGMER-NLMLKQEEVTIKDGWLVEKVKRVKEISE 77

Query: 93  AMARSKWRSFINGIVN---KRRSVRFQYDPRSYALNFDHGIGED 134
            +A  KW++FI    N   KR  ++ QYDP+SYALNFD G G +
Sbjct: 78  ILAGPKWKNFIRRFSNNNKKRSRMQCQYDPQSYALNFDEGFGRE 120

[Close]
BLAST of Carg03941 vs. TrEMBL
Match: tr|A0A1S3B8N4|A0A1S3B8N4_CUCME (uncharacterized protein LOC103487383 OS=Cucumis melo OX=3656 GN=LOC103487383 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 0 

Query: 29  EEESDLEVGVSYSSSGGF--FGFGSRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKR 88
           ++  D++  +S +  G F  FGFGS  +RN         LQ  Q  EE  +SWM+KK+K+
Sbjct: 22  DDLQDIDDSISSNGCGCFQLFGFGSNRNRNYE---GANLLQQKQGREE--ESWMVKKLKK 81

Query: 89  FEEIIKAMARSKWRSFING----IVNKRRSVRFQYDPRSYALNFDHGIGEDGGGGGRHGY 148
            +E+ + +A  KW++FI      +  K++  RFQYDP SYALNFD         GG  G 
Sbjct: 82  VKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYALNFD---------GGFDGE 140

Query: 149 SPPSEPPMGLGIR 156
                PP+G   R
Sbjct: 142 EDDHHPPIGFSSR 140

[Close]
BLAST of Carg03941 vs. TrEMBL
Match: tr|A0A2P6PXQ6|A0A2P6PXQ6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0297221 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 41  SSSGGFFGFGSR-----LSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMA 100
           SS G F+G  SR      + N+ +R RY+     Q  E   ++W+++ VK+  E+ + +A
Sbjct: 69  SSCGCFWGLYSRELPCGRNNNNGIRGRYLL----QQGEVSKENWLVENVKKVRELSEVLA 128

Query: 101 RSKWRSFIN--GIVNKRRSVRFQYDPRSYALNFDHGIGED 134
             KW++FI   G + K+R V+ QYDP SY LNFD G+G +
Sbjct: 129 GPKWKNFIRSVGTIYKKRRVQAQYDPESYTLNFDEGVGRE 164

The following BLAST results are available for this feature:
BLAST of Carg03941 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023537514.16.5e-7295.92uncharacterized protein LOC111798530 [Cucurbita pepo subsp. pepo][more]
XP_023002532.11.1e-6692.57uncharacterized protein LOC111496346 [Cucurbita maxima][more]
XP_022997532.18.2e-4370.63uncharacterized protein LOC111492425 [Cucurbita maxima][more]
XP_022131993.13.1e-4266.44uncharacterized protein LOC111004972 [Momordica charantia][more]
XP_008445245.12.1e-3063.98PREDICTED: uncharacterized protein LOC103488331 [Cucumis melo][more]
BLAST of Carg03941 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg03941 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg03941 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BC68|A0A1S3BC68_CUCME1.4e-3063.98uncharacterized protein LOC103488331 OS=Cucumis melo OX=3656 GN=LOC103488331 PE=... [more]
tr|A0A0A0LPP6|A0A0A0LPP6_CUCSA5.9e-2962.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382480 PE=4 SV=1[more]
tr|B9HAI6|B9HAI6_POPTR6.7e-0940.38Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G259300v3 PE=... [more]
tr|A0A1S3B8N4|A0A1S3B8N4_CUCME1.1e-0836.84uncharacterized protein LOC103487383 OS=Cucumis melo OX=3656 GN=LOC103487383 PE=... [more]
tr|A0A2P6PXQ6|A0A2P6PXQ6_ROSCH2.6e-0838.00Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0297221 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03941-RACarg03941-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..160
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 64..135
NoneNo IPR availablePANTHERPTHR33168:SF13SUBFAMILY NOT NAMEDcoord: 64..135

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03941Cla022346Watermelon (97103) v1carwmB0978
Carg03941Csa2G382480Cucumber (Chinese Long) v2carcuB0987
Carg03941MELO3C011280Melon (DHL92) v3.5.1carmeB0955
Carg03941ClCG08G013540Watermelon (Charleston Gray)carwcgB0958
Carg03941CSPI02G23750Wild cucumber (PI 183967)carcpiB1010
Carg03941Cucsa.162650Cucumber (Gy14) v1carcgyB1091
Carg03941CmoCh12G003010Cucurbita moschata (Rifu)carcmoB1310
Carg03941Lsi08G012280Bottle gourd (USVL1VR-Ls)carlsiB898
Carg03941Cp4.1LG07g03000Cucurbita pepo (Zucchini)carcpeB1368
Carg03941Cp4.1LG11g03330Cucurbita pepo (Zucchini)carcpeB1352
Carg03941MELO3C011280.2Melon (DHL92) v3.6.1carmedB0961
Carg03941CsaV3_2G032300Cucumber (Chinese Long) v3carcucB1015
Carg03941Cla97C08G156940Watermelon (97103) v2carwmbB1034
Carg03941Bhi04G000019Wax gourdcarwgoB1142
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03941Carg09348Silver-seed gourdcarcarB168
The following block(s) are covering this gene:
GeneOrganismBlock
Carg03941Silver-seed gourdcarcarB239
Carg03941Silver-seed gourdcarcarB558
Carg03941Silver-seed gourdcarcarB572
Carg03941Cucumber (Gy14) v2carcgybB0960
Carg03941Cucurbita maxima (Rimu)carcmaB1349
Carg03941Cucurbita maxima (Rimu)carcmaB1353
Carg03941Cucurbita maxima (Rimu)carcmaB1357
Carg03941Cucurbita moschata (Rifu)carcmoB1313
Carg03941Cucurbita moschata (Rifu)carcmoB1315
Carg03941Cucurbita moschata (Rifu)carcmoB1319
Carg03941Cucurbita pepo (Zucchini)carcpeB1356
Carg03941Cucurbita pepo (Zucchini)carcpeB1363
Carg03941Cucurbita pepo (Zucchini)carcpeB1364
Carg03941Bottle gourd (USVL1VR-Ls)carlsiB893
Carg03941Watermelon (Charleston Gray)carwcgB0957
Carg03941Watermelon (Charleston Gray)carwcgB0951
Carg03941Watermelon (Charleston Gray)carwcgB0955
Carg03941Watermelon (97103) v1carwmB0980
Carg03941Watermelon (97103) v2carwmbB1030
Carg03941Watermelon (97103) v2carwmbB1033
Carg03941Watermelon (97103) v2carwmbB1036
Carg03941Wax gourdcarwgoB1149