CmoCh11G011300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SWI/SNF complex subunit SWI3D
Location	Cmo_Chr11 : 6371680 .. 6372949 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGGTATAAAAGATTATTGTGTTTAGTTGTGCACGATAACTTTGGAATTTACAAGTACAAATTATGTTTATGTTTATTTTTTGGAATTTACATGTACGAATTATGTTTATATTTATTTTATGGAACTATTGGAGATAACCTTATATATAATTTAATAGATTAATTAATTAAAAATATATATATATATTCAAAATATCACTAAAAACTAATATTTTTTAGACCCAAAATTAATTTATTAAAAATAATAAATCCTTTTAATTGGATAATTGAATATGATTTTAGCAGATAAGTTCATTAATTGATATATTTTTATCGACAAAATTAATTGAATAAATAGATGATTATTATTAATTTTAATTTTAATTGATTACTTATGATACATTCATAATGAATGAAGTAATAAAAATTAGTCAAAGACAGTTAGTTGATTATAAATAATCGATTAATTAGTTATGGTAAACCAAAATCAATTAATTAATTAACTATATATTCAAAGTAAAATTACAAATAACTATATTCAAAATAAAATTGAATAACACGAGCAGATCATGGATCTTCTTTCATTTGCTAGGATCGGCCAGAAGTTCTCTGAGGTTTTAGTTCTCTGAGGTTTTAAAATGTGTTGTTCTTTTAGGTTTATATACTGACTGCCTGTGTTATTTATGGTACCTGTTTATTTGTTCATAACAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGGTATCTCGATCAAAGTTGGTTTCGATCGATTTTGATTACATATTAATGAAATTATTACCCCTTCTTTGGGCAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG

mRNA sequence

ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG

Coding sequence (CDS)

ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG

Homology

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BLAST of CmoCh11G011300 vs. Swiss-Prot
Match: SWI3D_ARATH (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3)

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-34
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 1


Query: 21  NQSKNNEEENSKCTSKKEE-KIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIE 80
           N +   ++E   C   K++  I+KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 81  KQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPG 140
           KQLHKLE+KL+ FN+ ++++MR+REQL+RS+QRL+ ERAQIIAARLGVP S S   + P 
Sbjct: 867 KQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPT 926

Query: 141 NRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           NR+A NF N   RPPMGMA  RPP   P
Sbjct: 927 NRIAANFANVAQRPPMGMAFPRPPMPRP 954

[Close]

BLAST of CmoCh11G011300 vs. Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 43/134 (32.09%), Postives = 79/134 (58.96%), Query Frame = 1


Query: 13  EEIRLLD-DNQSKNNEEENSKCTSKKEEKI---DKLKRAAVTTLAAAAVKAKVLANQEED 72
           +E  LLD +NQ ++   + S     + +     DK+  A    L+AAA KAK+ A+ EE 
Sbjct: 544 KEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEER 603

Query: 73  QIRQLAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVP 132
           +I++L+  ++  QL ++E KL  F +++ + M+  EQ+++++QR   ERA++++AR G P
Sbjct: 604 EIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSP 663

Query: 133 ASASRGVAPPGNRM 143
                G++P  N +
Sbjct: 664 G----GISPQTNNL 673

[Close]

BLAST of CmoCh11G011300 vs. Swiss-Prot
Match: SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.8e-07
Identity = 42/140 (30.00%), Postives = 78/140 (55.71%), Query Frame = 1


Query: 8   LSLICEEI----RLLDDNQSKN------NEEENSKCTSKKEEKID--------KLKRAAV 67
           L+ +C+E      + D +   N      N E+++    ++EEK          +++ +  
Sbjct: 363 LAALCDEASCPKEIFDTDDYSNFTVDRANGEKDTDMEEQQEEKDGPQGLPVALRIRASVA 422

Query: 68  TTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRS 127
           T L AAA +AK+LA+QEE ++ QLA  +IE+QL KL+SKL + +D++++     + ++  
Sbjct: 423 TALGAAAAQAKILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGV 482

[Close]

BLAST of CmoCh11G011300 vs. Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 28  EENSKCTSKKEEKIDK--LKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKL 87
           E   +  +K E  I +  L  AA   LAAAAVKAK LA  EE +I+ L  +L+E Q+ KL
Sbjct: 840 ESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKL 899

Query: 88  ESKLAYFNDMDNVSMRIREQLDRSKQRLFQER 118
           E KL +F +++ +  R RE L+  +Q+L  +R
Sbjct: 900 EIKLRHFEELETIMDREREALEYQRQQLLADR 931

[Close]

BLAST of CmoCh11G011300 vs. Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-06
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1


Query: 13  EEIRLLDDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQ 72
           EE + L D   K  E +  K   + E     +  AA   LA+AA KAK LA  EE +I+ 
Sbjct: 836 EENKELTDT-CKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKS 895

Query: 73  LAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQER 118
           L  +L+E Q+ KLE KL +F +++ +  R +E L++ +Q+L  ER
Sbjct: 896 LVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTER 939

[Close]

BLAST of CmoCh11G011300 vs. TrEMBL
Match: A0A067K099_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18808 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 24   KNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLH 83
            K ++ E++      +  IDK+KRAAV+ L+AAAVKAK+LANQEEDQIRQLA  LIEKQL 
Sbjct: 911  KGSKRESADFKQNDDNSIDKVKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLR 970

Query: 84   KLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAP--PGNR 143
            KLE+KLA+FN+MD+V MR+REQLDRSKQ+L+ ERAQIIAARLG+PAS+SRG+ P  P NR
Sbjct: 971  KLETKLAFFNEMDHVIMRVREQLDRSKQKLYHERAQIIAARLGLPASSSRGMPPQLPTNR 1030

Query: 144  MAMNFPNSVPRPPMGMAPQRPPTSGP 168
            +AMNF NS+PRPPM M  QRPP + P
Sbjct: 1031 IAMNFANSIPRPPMSMTSQRPPIARP 1056

[Close]

BLAST of CmoCh11G011300 vs. TrEMBL
Match: B9HRP3_POPTR (DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0009s11780g PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.1e-39
Identity = 99/151 (65.56%), Postives = 119/151 (78.81%), Query Frame = 1


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           ++    + +E+      K + KIDK+KRAAV+ L+AAAVKAK+LANQEEDQIRQLA  LI
Sbjct: 825 EEGPKDSKKEKLDSEVIKDDNKIDKIKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLI 884

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAP- 138
           EKQLHKLE KLA+FN+MD+V MR+REQLDRS+QRL+QERAQIIA+RLG+P S SR V P 
Sbjct: 885 EKQLHKLEMKLAFFNEMDSVIMRVREQLDRSRQRLYQERAQIIASRLGLPPS-SRAVPPS 944

Query: 139 -PGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
            P NR+AMNF N+ PRPPM M  QRPP S P
Sbjct: 945 LPANRIAMNFANAFPRPPMSMTAQRPPISRP 974

[Close]

BLAST of CmoCh11G011300 vs. TrEMBL
Match: M5VJC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000770mg PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-38
Identity = 94/151 (62.25%), Postives = 120/151 (79.47%), Query Frame = 1


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           +D  +    E++    +K ++KIDKLK AAV+T++AAAVKAK+LA QEEDQIRQLA +LI
Sbjct: 824 EDQTNDGKSEKHDTIETKVDQKIDKLKHAAVSTISAAAVKAKLLAEQEEDQIRQLAAMLI 883

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGV--A 138
           EKQLHKLE+KL +F++M+NV MR+REQLDRS+Q+L+ ERAQIIAARLG+P S+SR +  +
Sbjct: 884 EKQLHKLEAKLGFFSEMENVVMRVREQLDRSRQKLYHERAQIIAARLGLPGSSSRPMPSS 943

Query: 139 PPGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
            P NRMAMN  NSVPRPP+ M   RPP S P
Sbjct: 944 MPANRMAMNVANSVPRPPLNMTSLRPPMSRP 974

[Close]

BLAST of CmoCh11G011300 vs. TrEMBL
Match: B9H0P7_POPTR (DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0004s16070g PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38
Identity = 97/150 (64.67%), Postives = 119/150 (79.33%), Query Frame = 1


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           D+    + +E+      K +  IDKLKRAAV+ L+AAAVKAK+LANQEEDQIR+LA  LI
Sbjct: 819 DEVPKDSKKEKPDSEVIKDDNNIDKLKRAAVSALSAAAVKAKLLANQEEDQIRELAASLI 878

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGV-PASASRGVAP 138
           EKQLHKLE+KLA+FN+MD+V MR+REQLDRS+QRL+QERAQIIAARLG+ P+S +   + 
Sbjct: 879 EKQLHKLETKLAFFNEMDSVIMRVREQLDRSRQRLYQERAQIIAARLGLPPSSRAMPQSL 938

Query: 139 PGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           P NR+AMNF N+ PRPPM MA QRPP S P
Sbjct: 939 PSNRIAMNFANTFPRPPMNMATQRPPISTP 968

[Close]

BLAST of CmoCh11G011300 vs. TrEMBL
Match: B9RBE0_RICCO (Transcription regulatory protein SWI3, putative OS=Ricinus communis GN=RCOM_1674900 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-38
Identity = 92/151 (60.93%), Postives = 118/151 (78.15%), Query Frame = 1


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           D++Q    +E+      K +  IDK+K AA++ L+AAAVKAK+LANQEEDQIRQLA  LI
Sbjct: 798 DEDQKDGKKEKPDSNEIKDDHNIDKIKSAAISALSAAAVKAKLLANQEEDQIRQLAASLI 857

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAP- 138
           EKQLHKLE+KL++FN+MD++ MR+REQLD+S+QRL+ ERAQIIA RLG+P S+SR + P 
Sbjct: 858 EKQLHKLETKLSFFNEMDHIIMRVREQLDKSRQRLYHERAQIIATRLGIPPSSSRAMPPT 917

Query: 139 -PGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
            P NR+AMN  NS+PRPP+ M  QRPP S P
Sbjct: 918 LPTNRIAMNIANSIPRPPVNMNSQRPPISRP 948

[Close]

BLAST of CmoCh11G011300 vs. TAIR10
Match: AT4G34430.4 (AT4G34430.4 DNA-binding family protein)

HSP 1 Score: 141.7 bits (356), Expect = 4.0e-34
Identity = 87/149 (58.39%), Postives = 111/149 (74.50%), Query Frame = 1


Query: 21  NQSKNNEEENSKCTSKKEE-KIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIE 80
           N +   ++E   C   K++  I+KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 81  K-QLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 140
           K QLHKLE+KL+ FN+ ++++MR+REQL+RS+QRL+ ERAQIIAARLGVP S S   + P
Sbjct: 867 KQQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLP 926

Query: 141 GNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
            NR+A NF N   RPPMGMA  RPP   P
Sbjct: 927 TNRIAANFANVAQRPPMGMAFPRPPMPRP 955

[Close]

BLAST of CmoCh11G011300 vs. TAIR10
Match: AT1G21700.1 (AT1G21700.1 SWITCH/sucrose nonfermenting 3C)

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-09
Identity = 43/134 (32.09%), Postives = 79/134 (58.96%), Query Frame = 1


Query: 13  EEIRLLD-DNQSKNNEEENSKCTSKKEEKI---DKLKRAAVTTLAAAAVKAKVLANQEED 72
           +E  LLD +NQ ++   + S     + +     DK+  A    L+AAA KAK+ A+ EE 
Sbjct: 544 KEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEER 603

Query: 73  QIRQLAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVP 132
           +I++L+  ++  QL ++E KL  F +++ + M+  EQ+++++QR   ERA++++AR G P
Sbjct: 604 EIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSP 663

Query: 133 ASASRGVAPPGNRM 143
                G++P  N +
Sbjct: 664 G----GISPQTNNL 673

[Close]

BLAST of CmoCh11G011300 vs. TAIR10
Match: AT2G47620.1 (AT2G47620.1 SWITCH/sucrose nonfermenting 3A)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-08
Identity = 42/140 (30.00%), Postives = 78/140 (55.71%), Query Frame = 1


Query: 8   LSLICEEI----RLLDDNQSKN------NEEENSKCTSKKEEKID--------KLKRAAV 67
           L+ +C+E      + D +   N      N E+++    ++EEK          +++ +  
Sbjct: 363 LAALCDEASCPKEIFDTDDYSNFTVDRANGEKDTDMEEQQEEKDGPQGLPVALRIRASVA 422

Query: 68  TTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRS 127
           T L AAA +AK+LA+QEE ++ QLA  +IE+QL KL+SKL + +D++++     + ++  
Sbjct: 423 TALGAAAAQAKILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGV 482

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: gi|449465389|ref|XP_004150410.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 8.1e-61
Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 1


Query: 16  RLLDDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAM 75
           R  DDNQSK+N+EENS  T KKEEKIDKLKRAAVTTL+AAAVKAK+LANQEEDQIRQLAM
Sbjct: 833 RRADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAM 892

Query: 76  ILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGV 135
           ILIEKQLHKLESKLA+FN+MDNV++R+REQLDRSKQRLFQERAQIIAARLG+PAS+SRGV
Sbjct: 893 ILIEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGV 952

Query: 136 AP--PGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           AP  P NRMAMNFPNS PRPPMGM PQRPP SGP
Sbjct: 953 APTLPANRMAMNFPNSAPRPPMGMTPQRPPISGP 986

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: gi|659092382|ref|XP_008447039.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 131/154 (85.06%), Postives = 141/154 (91.56%), Query Frame = 1


Query: 16  RLLDDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAM 75
           R  DDNQSK+N+EENS  T KKEEKIDKLK AAVT L+AAAVKAK+LANQEEDQIRQLAM
Sbjct: 835 RRADDNQSKDNKEENSNSTGKKEEKIDKLKCAAVTALSAAAVKAKILANQEEDQIRQLAM 894

Query: 76  ILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGV 135
           ILIEKQLHKLESKLA+FN+MDNV+MR+REQLDRSKQRLFQERAQIIAARLG+PAS+SRGV
Sbjct: 895 ILIEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGV 954

Query: 136 AP--PGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           AP  P NRMA NFPNS PRPPMGM PQRPPTSGP
Sbjct: 955 APTLPANRMATNFPNSAPRPPMGMTPQRPPTSGP 988

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: gi|643718431|gb|KDP29646.1| (hypothetical protein JCGZ_18808 [Jatropha curcas])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 24   KNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLH 83
            K ++ E++      +  IDK+KRAAV+ L+AAAVKAK+LANQEEDQIRQLA  LIEKQL 
Sbjct: 911  KGSKRESADFKQNDDNSIDKVKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLR 970

Query: 84   KLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAP--PGNR 143
            KLE+KLA+FN+MD+V MR+REQLDRSKQ+L+ ERAQIIAARLG+PAS+SRG+ P  P NR
Sbjct: 971  KLETKLAFFNEMDHVIMRVREQLDRSKQKLYHERAQIIAARLGLPASSSRGMPPQLPTNR 1030

Query: 144  MAMNFPNSVPRPPMGMAPQRPPTSGP 168
            +AMNF NS+PRPPM M  QRPP + P
Sbjct: 1031 IAMNFANSIPRPPMSMTSQRPPIARP 1056

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: gi|802674632|ref|XP_012081763.1| (PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 24  KNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLH 83
           K ++ E++      +  IDK+KRAAV+ L+AAAVKAK+LANQEEDQIRQLA  LIEKQL 
Sbjct: 840 KGSKRESADFKQNDDNSIDKVKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLR 899

Query: 84  KLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAP--PGNR 143
           KLE+KLA+FN+MD+V MR+REQLDRSKQ+L+ ERAQIIAARLG+PAS+SRG+ P  P NR
Sbjct: 900 KLETKLAFFNEMDHVIMRVREQLDRSKQKLYHERAQIIAARLGLPASSSRGMPPQLPTNR 959

Query: 144 MAMNFPNSVPRPPMGMAPQRPPTSGP 168
           +AMNF NS+PRPPM M  QRPP + P
Sbjct: 960 IAMNFANSIPRPPMSMTSQRPPIARP 985

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: gi|802674640|ref|XP_012081764.1| (PREDICTED: SWI/SNF complex subunit SWI3D isoform X2 [Jatropha curcas])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 24  KNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLH 83
           K ++ E++      +  IDK+KRAAV+ L+AAAVKAK+LANQEEDQIRQLA  LIEKQL 
Sbjct: 839 KGSKRESADFKQNDDNSIDKVKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLR 898

Query: 84  KLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAP--PGNR 143
           KLE+KLA+FN+MD+V MR+REQLDRSKQ+L+ ERAQIIAARLG+PAS+SRG+ P  P NR
Sbjct: 899 KLETKLAFFNEMDHVIMRVREQLDRSKQKLYHERAQIIAARLGLPASSSRGMPPQLPTNR 958

Query: 144 MAMNFPNSVPRPPMGMAPQRPPTSGP 168
           +AMNF NS+PRPPM M  QRPP + P
Sbjct: 959 IAMNFANSIPRPPMSMTSQRPPIARP 984

The following BLAST results are available for this feature:

BLAST of CmoCh11G011300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SWI3D_ARATH	2.9e-34	58.78	SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3	[more]
SWI3C_ARATH	1.4e-07	32.09	SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1	[more]
SWI3A_ARATH	8.8e-07	30.00	SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1	[more]
SMRC2_HUMAN	2.0e-06	41.30	SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1	[more]
SMRC1_HUMAN	3.3e-06	37.14	SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3	[more]

BLAST of CmoCh11G011300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067K099_JATCU	1.1e-40	67.12	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18808 PE=4 SV=1	[more]
B9HRP3_POPTR	6.1e-39	65.56	DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0009s11780g PE=4 SV=1	[more]
M5VJC1_PRUPE	2.3e-38	62.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000770mg PE=4 SV=1	[more]
B9H0P7_POPTR	3.0e-38	64.67	DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0004s16070g PE=4 SV=1	[more]
B9RBE0_RICCO	3.9e-38	60.93	Transcription regulatory protein SWI3, putative OS=Ricinus communis GN=RCOM_1674...	[more]

BLAST of CmoCh11G011300 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34430.4	4.0e-34	58.39	DNA-binding family protein	[more]
AT1G21700.1	7.7e-09	32.09	SWITCH/sucrose nonfermenting 3C	[more]
AT2G47620.1	5.0e-08	30.00	SWITCH/sucrose nonfermenting 3A	[more]

BLAST of CmoCh11G011300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465389\|ref\|XP_004150410.1\|	8.1e-61	85.71	PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis sativus]	[more]
gi\|659092382\|ref\|XP_008447039.1\|	1.2e-59	85.06	PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo]	[more]
gi\|643718431\|gb\|KDP29646.1\|	1.6e-40	67.12	hypothetical protein JCGZ_18808 [Jatropha curcas]	[more]
gi\|802674632\|ref\|XP_012081763.1\|	1.6e-40	67.12	PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]	[more]
gi\|802674640\|ref\|XP_012081764.1\|	1.6e-40	67.12	PREDICTED: SWI/SNF complex subunit SWI3D isoform X2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011300.1	CmoCh11G011300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 19..167 score: 1.4
None	No IPR available	PANTHER	PTHR12802:SF39	SWI/SNF COMPLEX SUBUNIT SWI3D	coord: 19..167 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G011300	Cucsa.240470	Cucumber (Gy14) v1	cgycmoB0673
CmoCh11G011300	CmaCh11G011040	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G011300	CmaCh19G006580	Cucurbita maxima (Rimu)	cmacmoB495
CmoCh11G011300	Cla015933	Watermelon (97103) v1	cmowmB111
CmoCh11G011300	Csa7G267930	Cucumber (Chinese Long) v2	cmocuB141
CmoCh11G011300	MELO3C012530	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G011300	ClCG02G005100	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G011300	CSPI07G11550	Wild cucumber (PI 183967)	cmocpiB140
CmoCh11G011300	Lsi11G010940	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G011300	Cp4.1LG15g05290	Cucurbita pepo (Zucchini)	cmocpeB096
CmoCh11G011300	Cp4.1LG04g00800	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G011300	MELO3C012530.2	Melon (DHL92) v3.6.1	cmomedB092
CmoCh11G011300	Cla97C02G032050	Watermelon (97103) v2	cmowmbB089
CmoCh11G011300	Bhi05G001087	Wax gourd	cmowgoB0121
CmoCh11G011300	CsGy7G010800	Cucumber (Gy14) v2	cgybcmoB884
CmoCh11G011300	Carg19419	Silver-seed gourd	carcmoB0431
CmoCh11G011300	Carg24692	Silver-seed gourd	carcmoB0245

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G011300	CmoCh19G006710	Cucurbita moschata (Rifu)	cmocmoB111

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G011300	Cucumber (Chinese Long) v3	cmocucB0163
CmoCh11G011300	Cucurbita moschata (Rifu)	cmocmoB120