CsGy7G010800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G010800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	SWI/SNF complex subunit SWI3D
Location	Chr7 : 13678504 .. 13680607 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTAACTTGAGAATTTCTTTTTTCCTCCGTAAGAAGGTGGGTGTTTGGCGTGTGGAAGATACTCATGCAAAAGTTAAGATTGTTGGAAGATGTGCTTTTAGAGCTCTTTTGTGCACATTTGGTAGGAAAGTGATATGTGTTCCTTCATAAAGGTTCTCTTTTCTTTTTTTGGTAATCTTTTACATAATACGACGTCTTTTTAGATTTCTTTAGATACTCGTGGAGTACCTTTTTGGGTGCCCTAAACCCCTGGCCCCTTTTGTATTTCTTGTTTTCTTTTGGAATACAGCCCTCTTGTTTCTTATGAAAAAGAGTGATGGAGTAACTATTTAAGGGAAAAGCGGTGGAAAGTGAGGTTGTCAGCTTTTTCCTTCTTGGTTGCACCACCCCAAGTTTTTAGTCTTTTTGTGGATGGGTATAATGGTGGCCTATAAGTAGTACAAATAGTAGTTTGGAAAGGCCCTTTACTCTTGAAGAGATTAAGTAGACAGCGTTTAGTTTTTGAGGGATGTAAGGTGCTCAGTCAGACTTGATGACCACGTTTAAGAGTATTGGAAGACCATCAAGTTTTATCTTTTTAAGACATCGGGTGGATACTTTGGCAGACATCTATCTACTTCCCGCGAAAGAAAGATTTTCTATAGAAATTTTGAGTTGATCAATCTTGTGAATTGTCTTTATAATATTATATATGGACCACAAAGTATTTGGACGTTATAATCAGGCTTGTTTTTTTGTGCTGAAGATGGTATAATTTCTTGTGGTTTTCTATCTTTTCTCTTTTTCCTGTTTTTCAGAGTATTTCTCGTCTGTTATATGCCACTTATTACACACCTCGATCCTATGAGTGCTGAATCTTTAAATGTGTGGGAAACACTCTTTACATTTTGTAGTGTTATCATACCTGATTTTCTGAAATTTTAGGATAACTCACTCAGTGAAATCATGAATTTTCATTTGTTAGGCTCGGCAAGAACAAGAAGTATATGAAAATGCATTCTTTATTTTAGCTTTATTTATTTGTTCTTTAACAGATGATAATCAAAGCAAGGACAATAAAGAAGAAAACTCCAACAGTACAGGTAAAAAAGAAGAAAAGATTGATAAGCTGAAGCGTGCTGCGGTTACAACACTGTCAGCAGCTGCAGTGAAGGCAAAAATACTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTGCCATGATCTTAATCGAAAAGCAGGTAACTCAATTGAAATCACCTCCCTTTCCAAACCATTGTTCCTTATTCTCATTTTCTAAAAACAATTTAAACGAAACTTAAAACTGCCCCCTCTTTTTGTAGCTGCACAAGTTGGAAAGCAAGTTAGCATTCTTCAACGAGATGGATAATGTGACATTGAGAGTGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAAGAACGTGCACAGATAATTGCCGCTCGACTCGGCTTACCTGCTTCATCATCCCGAGGTGTGGCACCGACGTTACCAGCGAATAGAATGGCCATGAACTTTCCAAACTCAGCCCCAAGGCCTCCAATGGGCATGACACCCCAAAGGCCACCGATTTCAGGACCGCCGGGTATGGCTCCTACTAACCCTAACCCCCAATATGGGACCACCAGTACAACAATTTCTGGGAGTTCAATTCGCCCTGCGAATCAGGACACACTTTCTTCTGTTGGGACCAAGTAAAACTCAACATTAGCTTGCAGGTTGAGATTGCAACCATTTTAATACAGTAGAATTCACTTCAGTTTACTGTGTAACCTATTTGATTTTATTGTTGTATTATATTCAATCAACTAGGAACATTTTGAAATTTGGAAGGAAAAGAAAAGCTAATGTAGTTCACCTGACTTTACAGTCCCTTCGTATTCTGACCAGCCCCCTGTCTCTTCTCCAAAATCTCTCTCACCACTTCAGTGGCTTTCGATTGGACATTTCGTAATATATTTATAGTAAAAACTTTGGAGAAATATGTTTTCTTTTTAGTTTAATAAAATGTGCTGTGTGGTCTCATCTCAGAAGTACATAATTTATGTCTGGATTATGTTTATGTTGAAAATATAGTTTGAAATTTTATTT

mRNA sequence

ATGGCAGATGATAATCAAAGCAAGGACAATAAAGAAGAAAACTCCAACAGTACAGGTAAAAAAGAAGAAAAGATTGATAAGCTGAAGCGTGCTGCGGTTACAACACTGTCAGCAGCTGCAGTGAAGGCAAAAATACTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTGCCATGATCTTAATCGAAAAGCAGCTGCACAAGTTGGAAAGCAAGTTAGCATTCTTCAACGAGATGGATAATGTGACATTGAGAGTGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAAGAACGTGCACAGATAATTGCCGCTCGACTCGGCTTACCTGCTTCATCATCCCGAGGTGTGGCACCGACGTTACCAGCGAATAGAATGGCCATGAACTTTCCAAACTCAGCCCCAAGGCCTCCAATGGGCATGACACCCCAAAGGCCACCGATTTCAGGACCGCCGGGTATGGCTCCTACTAACCCTAACCCCCAATATGGGACCACCAGTACAACAATTTCTGGGAGTTCAATTCGCCCTGCGAATCAGGACACACTTTCTTCTGTTGGGACCAAGTAAAACTCAACATTAGCTTGCAGGTTGAGATTGCAACCATTTTAATACAGTAGAATTCACTTCAGTTTACTGTGTAACCTATTTGATTTTATTGTTGTATTATATTCAATCAACTAGGAACATTTTGAAATTTGGAAGGAAAAGAAAAGCTAATGTAGTTCACCTGACTTTACAGTCCCTTCGTATTCTGACCAGCCCCCTGTCTCTTCTCCAAAATCTCTCTCACCACTTCAGTGGCTTTCGATTGGACATTTCGTAATATATTTATAGTAAAAACTTTGGAGAAATATGTTTTCTTTTTAGTTTAATAAAATGTGCTGTGTGGTCTCATCTCAGAAGTACATAATTTATGTCTGGATTATGTTTATGTTGAAAATATAGTTTGAAATTTTATTT

Coding sequence (CDS)

ATGGCAGATGATAATCAAAGCAAGGACAATAAAGAAGAAAACTCCAACAGTACAGGTAAAAAAGAAGAAAAGATTGATAAGCTGAAGCGTGCTGCGGTTACAACACTGTCAGCAGCTGCAGTGAAGGCAAAAATACTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTGCCATGATCTTAATCGAAAAGCAGCTGCACAAGTTGGAAAGCAAGTTAGCATTCTTCAACGAGATGGATAATGTGACATTGAGAGTGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAAGAACGTGCACAGATAATTGCCGCTCGACTCGGCTTACCTGCTTCATCATCCCGAGGTGTGGCACCGACGTTACCAGCGAATAGAATGGCCATGAACTTTCCAAACTCAGCCCCAAGGCCTCCAATGGGCATGACACCCCAAAGGCCACCGATTTCAGGACCGCCGGGTATGGCTCCTACTAACCCTAACCCCCAATATGGGACCACCAGTACAACAATTTCTGGGAGTTCAATTCGCCCTGCGAATCAGGACACACTTTCTTCTGTTGGGACCAAGTAA

Protein sequence

MADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMILIEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANRMAMNFPNSAPRPPMGMTPQRPPISGPPGMAPTNPNPQYGTTSTTISGSSIRPANQDTLSSVGTK

Homology

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BLAST of CsGy7G010800 vs. NCBI nr
Match: XP_022972492.1 (SWI/SNF complex subunit SWI3D isoform X1 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 4.7e-77
Identity = 166/190 (87.37%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 2    ADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 61
            ADDNQSKDNKEENSN   KKE+KIDKLKRAAVTTLSAAAVKAKILANQEEDQIR LAMIL
Sbjct: 837  ADDNQSKDNKEENSNCMSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRHLAMIL 896

Query: 62   IEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP 121
            IEKQLHKLESKLAFFN+MDNVT+R+REQLDRSKQRLFQERAQIIAARLGLPASSSRG AP
Sbjct: 897  IEKQLHKLESKLAFFNDMDNVTVRMREQLDRSKQRLFQERAQIIAARLGLPASSSRGGAP 956

Query: 122  TLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRPAN 181
            TLP NRM MNF N+ PRPPMGM P+RPP SG  GMA +NPNPQY TTSTTISGSS RPAN
Sbjct: 957  TLPTNRMPMNFANTVPRPPMGMVPKRPPTSGLPGMAASNPNPQYPTTSTTISGSSFRPAN 1016

Query: 182  QDTLSSVGTK 192
            QDTLSSVG+K
Sbjct: 1017 QDTLSSVGSK 1026

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BLAST of CsGy7G010800 vs. NCBI nr
Match: XP_022972493.1 (SWI/SNF complex subunit SWI3D isoform X2 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 4.7e-77
Identity = 166/190 (87.37%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 2    ADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 61
            ADDNQSKDNKEENSN   KKE+KIDKLKRAAVTTLSAAAVKAKILANQEEDQIR LAMIL
Sbjct: 836  ADDNQSKDNKEENSNCMSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRHLAMIL 895

Query: 62   IEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP 121
            IEKQLHKLESKLAFFN+MDNVT+R+REQLDRSKQRLFQERAQIIAARLGLPASSSRG AP
Sbjct: 896  IEKQLHKLESKLAFFNDMDNVTVRMREQLDRSKQRLFQERAQIIAARLGLPASSSRGGAP 955

Query: 122  TLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRPAN 181
            TLP NRM MNF N+ PRPPMGM P+RPP SG  GMA +NPNPQY TTSTTISGSS RPAN
Sbjct: 956  TLPTNRMPMNFANTVPRPPMGMVPKRPPTSGLPGMAASNPNPQYPTTSTTISGSSFRPAN 1015

Query: 182  QDTLSSVGTK 192
            QDTLSSVG+K
Sbjct: 1016 QDTLSSVGSK 1025

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BLAST of CsGy7G010800 vs. NCBI nr
Match: XP_022952326.1 (SWI/SNF complex subunit SWI3D-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 165/190 (86.84%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 2    ADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 61
            ADDNQSKDNKEENSN   KKE+KIDK KRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL
Sbjct: 837  ADDNQSKDNKEENSNCMSKKEDKIDKFKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 896

Query: 62   IEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP 121
            IEKQLHKLESKLAFFN+M+NVT+R+REQLDRSKQRLFQERAQIIAARLGLPASSSRG AP
Sbjct: 897  IEKQLHKLESKLAFFNDMENVTVRMREQLDRSKQRLFQERAQIIAARLGLPASSSRGGAP 956

Query: 122  TLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRPAN 181
            TLP NRM MNF N+ PRPPMGM PQRPP SG  GMA +NPNPQY TT TTISGSS RPAN
Sbjct: 957  TLPTNRMPMNFANTVPRPPMGMVPQRPPTSGLPGMAASNPNPQYPTTGTTISGSSFRPAN 1016

Query: 182  QDTLSSVGTK 192
            QDTLSSVG+K
Sbjct: 1017 QDTLSSVGSK 1026

[Close]

BLAST of CsGy7G010800 vs. NCBI nr
Match: XP_022952327.1 (SWI/SNF complex subunit SWI3D-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 165/190 (86.84%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 2    ADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 61
            ADDNQSKDNKEENSN   KKE+KIDK KRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL
Sbjct: 836  ADDNQSKDNKEENSNCMSKKEDKIDKFKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 895

Query: 62   IEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP 121
            IEKQLHKLESKLAFFN+M+NVT+R+REQLDRSKQRLFQERAQIIAARLGLPASSSRG AP
Sbjct: 896  IEKQLHKLESKLAFFNDMENVTVRMREQLDRSKQRLFQERAQIIAARLGLPASSSRGGAP 955

Query: 122  TLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRPAN 181
            TLP NRM MNF N+ PRPPMGM PQRPP SG  GMA +NPNPQY TT TTISGSS RPAN
Sbjct: 956  TLPTNRMPMNFANTVPRPPMGMVPQRPPTSGLPGMAASNPNPQYPTTGTTISGSSFRPAN 1015

Query: 182  QDTLSSVGTK 192
            QDTLSSVG+K
Sbjct: 1016 QDTLSSVGSK 1025

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BLAST of CsGy7G010800 vs. NCBI nr
Match: XP_022135773.1 (SWI/SNF complex subunit SWI3D [Momordica charantia])

HSP 1 Score: 281.2 bits (718), Expect = 2.7e-72
Identity = 163/194 (84.02%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 2    ADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 61
            A DNQSKDNKEE S+ T KKE+KIDKLKRAAVTTLSAAAVKAK+LANQEEDQIRQLAMIL
Sbjct: 840  AGDNQSKDNKEEKSSCTSKKEDKIDKLKRAAVTTLSAAAVKAKVLANQEEDQIRQLAMIL 899

Query: 62   IEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP 121
            IEKQLHKLESKLAFFNEMDNVT+RVREQLDRSKQRLFQERAQIIAARLGLPA+SSR +AP
Sbjct: 900  IEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGLPATSSRVMAP 959

Query: 122  TLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPN----PQYGTTSTTISGSSI 181
            +LPANRMAMNF NS PRPPMGMT QRPP    X     NPN    PQY TTSTTISGSS 
Sbjct: 960  SLPANRMAMNFANSVPRPPMGMTSQRPPTXXXXXXXXXNPNLQPQPQYATTSTTISGSSF 1019

Query: 182  RPANQDTLSSVGTK 192
            RPANQDT+SSVGTK
Sbjct: 1020 RPANQDTISSVGTK 1033

[Close]

BLAST of CsGy7G010800 vs. TAIR10
Match: AT4G34430.4 (DNA-binding family protein)

HSP 1 Score: 150.6 bits (379), Expect = 9.8e-37
Identity = 104/189 (55.03%), Postives = 131/189 (69.31%), Query Frame = 0


Query: 2   ADDNQSKDNKEENSNSTGKKEE-KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMI 61
           A  N + + K+E     G K++  I+KLKRAA++ +SAAAVKAK LA QEEDQIRQL+  
Sbjct: 804 AGGNPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGS 863

Query: 62  LIEK-QLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGV 121
           LIEK QLHKLE+KL+ FNE +++T+RVREQL+RS+QRL+ ERAQIIAARLG+P S S   
Sbjct: 864 LIEKQQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSS-- 923

Query: 122 APTLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRP 181
             +LP NR+A NF N A RPPMGM   RPP+  P G     P P     +TT++GSS   
Sbjct: 924 KASLPTNRIAANFANVAQRPPMGMAFPRPPMPRPPGF----PVPGSFVAATTMTGSSDPS 983

Query: 182 ANQDTLSSV 189
              D +SSV
Sbjct: 984 PGSDNVSSV 986

[Close]

BLAST of CsGy7G010800 vs. TAIR10
Match: AT1G21700.1 (SWITCH/sucrose nonfermenting 3C)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-09
Identity = 40/116 (34.48%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 4   DNQSKDNKEENSNSTGKKEE---KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMI 63
           +NQ +D   + S+  G + +     DK+  A    LSAAA KAK+ A+ EE +I++L+  
Sbjct: 552 ENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSAN 611

Query: 64  LIEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSS 117
           ++  QL ++E KL  F E++ + ++  EQ+++++QR   ERA++++AR G P   S
Sbjct: 612 IVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSPGGIS 667

[Close]

BLAST of CsGy7G010800 vs. TAIR10
Match: AT2G47620.1 (SWITCH/sucrose nonfermenting 3A)

HSP 1 Score: 44.3 bits (103), Expect = 9.9e-05
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 2   ADDNQSKDNKEENSNSTGKKEEKIDKLKRAAV-TTLSAAAVKAKILANQEEDQIRQLAMI 61
           A+  +  D +E+     G +   +    RA+V T L AAA +AKILA+QEE ++ QLA  
Sbjct: 390 ANGEKDTDMEEQQEEKDGPQGLPVALRIRASVATALGAAAAQAKILADQEEREMEQLAAT 449

Query: 62  LIEKQLHKLESKLAFFNEMDN 82
           +IE+QL KL+SKL F +++++
Sbjct: 450 VIEQQLKKLQSKLKFLDDLES 470

[Close]

BLAST of CsGy7G010800 vs. Swiss-Prot
Match: sp|Q8VY05|SWI3D_ARATH (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 7.2e-37
Identity = 104/188 (55.32%), Postives = 131/188 (69.68%), Query Frame = 0


Query: 2   ADDNQSKDNKEENSNSTGKKEE-KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMI 61
           A  N + + K+E     G K++  I+KLKRAA++ +SAAAVKAK LA QEEDQIRQL+  
Sbjct: 804 AGGNPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGS 863

Query: 62  LIEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVA 121
           LIEKQLHKLE+KL+ FNE +++T+RVREQL+RS+QRL+ ERAQIIAARLG+P S S    
Sbjct: 864 LIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSS--K 923

Query: 122 PTLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRPA 181
            +LP NR+A NF N A RPPMGM   RPP+  P G     P P     +TT++GSS    
Sbjct: 924 ASLPTNRIAANFANVAQRPPMGMAFPRPPMPRPPGF----PVPGSFVAATTMTGSSDPSP 983

Query: 182 NQDTLSSV 189
             D +SSV
Sbjct: 984 GSDNVSSV 985

[Close]

BLAST of CsGy7G010800 vs. Swiss-Prot
Match: sp|Q9XI07|SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-08
Identity = 40/116 (34.48%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 4   DNQSKDNKEENSNSTGKKEE---KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMI 63
           +NQ +D   + S+  G + +     DK+  A    LSAAA KAK+ A+ EE +I++L+  
Sbjct: 552 ENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSAN 611

Query: 64  LIEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSS 117
           ++  QL ++E KL  F E++ + ++  EQ+++++QR   ERA++++AR G P   S
Sbjct: 612 IVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSPGGIS 667

[Close]

BLAST of CsGy7G010800 vs. Swiss-Prot
Match: sp|Q92922|SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens OX=9606 GN=SMARCC1 PE=1 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 31  AAVTTLSAAAVKAKILANQEEDQIRQLAMILIEKQLHKLESKLAFFNEMDNVTLRVREQL 90
           AA   L++AA KAK LA  EE +I+ L  +L+E Q+ KLE KL  F E++ +       +
Sbjct: 869 AAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETI-------M 928

Query: 91  DRSKQRLFQER 102
           DR K+ L Q+R
Sbjct: 929 DREKEALEQQR 932

[Close]

BLAST of CsGy7G010800 vs. TrEMBL
Match: tr|A0A1S3BH30|A0A1S3BH30_CUCME (SWI/SNF complex subunit SWI3D OS=Cucumis melo OX=3656 GN=LOC103489589 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.5e-60
Identity = 149/190 (78.42%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 2    ADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 61
            ADDNQ               EEKIDKLK AAVT LSAAAVKAKILANQEEDQIRQLAMIL
Sbjct: 837  ADDNQXXXXXXXXXXXXXXXEEKIDKLKCAAVTALSAAAVKAKILANQEEDQIRQLAMIL 896

Query: 62   IEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP 121
            IEKQLHKLESKLAFFNEMDNVT+RVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP
Sbjct: 897  IEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP 956

Query: 122  TLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRPAN 181
            TLPANRMA NFPNSAPRPPMGMT         X            T+STTISGSSIRPAN
Sbjct: 957  TLPANRMATNFPNSAPRPPMGMTXXXXXXXXXXXXXXXXXXXXXXTSSTTISGSSIRPAN 1016

Query: 182  QDTLSSVGTK 192
            QDTLSSVGTK
Sbjct: 1017 QDTLSSVGTK 1026

[Close]

BLAST of CsGy7G010800 vs. TrEMBL
Match: tr|A0A2N9IU24|A0A2N9IU24_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55531 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.8e-54
Identity = 130/191 (68.06%), Postives = 155/191 (81.15%), Query Frame = 0


Query: 2    ADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMIL 61
            A ++Q +D K++ +    KKE KID++KRAAVT +SA AVKAK+LANQEEDQIRQLA  L
Sbjct: 876  ASEDQIEDGKKQETIEI-KKENKIDRVKRAAVTAISAVAVKAKLLANQEEDQIRQLAAFL 935

Query: 62   IEKQLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAP 121
            IEKQLHKLESKLAFFNEM+NV +RV+EQLDRS+QRL+ ERAQIIAARLGLPASSSR + P
Sbjct: 936  IEKQLHKLESKLAFFNEMENVVVRVKEQLDRSRQRLYHERAQIIAARLGLPASSSRAMPP 995

Query: 122  TLPANRMAMNFPNSAPRPPMGMTPQRPPISGPXG-MAPTNPNPQYGTTSTTISGSSIRPA 181
            +LP NR+A NF N+  RPPM MT QRPPI  P G +APT PNP    TS T++GSSIRP+
Sbjct: 996  SLPTNRIATNFANAVARPPMSMTAQRPPIQRPMGTVAPTPPNP---FTSNTVAGSSIRPS 1055

Query: 182  NQDTLSSVGTK 192
            +QD L S+GTK
Sbjct: 1056 SQDKLPSIGTK 1062

[Close]

BLAST of CsGy7G010800 vs. TrEMBL
Match: tr|A0A067K099|A0A067K099_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18808 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.7e-52
Identity = 128/185 (69.19%), Postives = 148/185 (80.00%), Query Frame = 0


Query: 8    KDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMILIEKQLH 67
            K +K E+++     +  IDK+KRAAV+ LSAAAVKAK+LANQEEDQIRQLA  LIEKQL 
Sbjct: 911  KGSKRESADFKQNDDNSIDKVKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLR 970

Query: 68   KLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANR 127
            KLE+KLAFFNEMD+V +RVREQLDRSKQ+L+ ERAQIIAARLGLPASSSRG+ P LP NR
Sbjct: 971  KLETKLAFFNEMDHVIMRVREQLDRSKQKLYHERAQIIAARLGLPASSSRGMPPQLPTNR 1030

Query: 128  MAMNFPNSAPRPPMGMTPQRPPISGPXG-MAPTNPNPQYGTTSTTISGSSIRPANQDTLS 187
            +AMNF NS PRPPM MT QRPPI+ P G +APT  N    T  +T +GSSIRP+ QD LS
Sbjct: 1031 IAMNFANSIPRPPMSMTSQRPPIARPMGTLAPTPSN----TFVSTTAGSSIRPSGQDKLS 1090

Query: 188  SVGTK 192
            SVG K
Sbjct: 1091 SVGMK 1091

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BLAST of CsGy7G010800 vs. TrEMBL
Match: tr|A0A2C9UHP5|A0A2C9UHP5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G164300 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.5e-51
Identity = 124/187 (66.31%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 5    NQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMILIEK 64
            +Q    KE+      K++  IDKLKRAAV+ LSAAAVKA+IL  QEEDQIRQLA ++IEK
Sbjct: 829  DQKGSKKEKPDCRKIKEDNTIDKLKRAAVSALSAAAVKARILEKQEEDQIRQLAALVIEK 888

Query: 65   QLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLP 124
            QLHKLE KLAFFNEMD++ +RVREQLDRS+QRL+ ERAQIIAARLGLPASSSRG+ PT P
Sbjct: 889  QLHKLEMKLAFFNEMDHIIMRVREQLDRSRQRLYHERAQIIAARLGLPASSSRGMPPTSP 948

Query: 125  ANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRPANQDT 184
             NR+A NF NS PRPPM MT QRPPI+ P G   + P+  +    TT +GSSIRP+ QD 
Sbjct: 949  TNRVATNFVNSIPRPPMSMTSQRPPIARPMGTLASTPSNSF--VPTTTAGSSIRPSGQDK 1008

Query: 185  LSSVGTK 192
            LSSVGTK
Sbjct: 1009 LSSVGTK 1013

[Close]

BLAST of CsGy7G010800 vs. TrEMBL
Match: tr|A0A2C9UGJ9|A0A2C9UGJ9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G164300 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.5e-51
Identity = 124/187 (66.31%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 5    NQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMILIEK 64
            +Q    KE+      K++  IDKLKRAAV+ LSAAAVKA+IL  QEEDQIRQLA ++IEK
Sbjct: 830  DQKGSKKEKPDCRKIKEDNTIDKLKRAAVSALSAAAVKARILEKQEEDQIRQLAALVIEK 889

Query: 65   QLHKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLP 124
            QLHKLE KLAFFNEMD++ +RVREQLDRS+QRL+ ERAQIIAARLGLPASSSRG+ PT P
Sbjct: 890  QLHKLEMKLAFFNEMDHIIMRVREQLDRSRQRLYHERAQIIAARLGLPASSSRGMPPTSP 949

Query: 125  ANRMAMNFPNSAPRPPMGMTPQRPPISGPXGMAPTNPNPQYGTTSTTISGSSIRPANQDT 184
             NR+A NF NS PRPPM MT QRPPI+ P G   + P+  +    TT +GSSIRP+ QD 
Sbjct: 950  TNRVATNFVNSIPRPPMSMTSQRPPIARPMGTLASTPSNSF--VPTTTAGSSIRPSGQDK 1009

Query: 185  LSSVGTK 192
            LSSVGTK
Sbjct: 1010 LSSVGTK 1014

The following BLAST results are available for this feature:

BLAST of CsGy7G010800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972492.1	4.7e-77	87.37	SWI/SNF complex subunit SWI3D isoform X1 [Cucurbita maxima]	[more]
XP_022972493.1	4.7e-77	87.37	SWI/SNF complex subunit SWI3D isoform X2 [Cucurbita maxima]	[more]
XP_022952326.1	1.0e-76	86.84	SWI/SNF complex subunit SWI3D-like isoform X1 [Cucurbita moschata]	[more]
XP_022952327.1	1.0e-76	86.84	SWI/SNF complex subunit SWI3D-like isoform X2 [Cucurbita moschata]	[more]
XP_022135773.1	2.7e-72	84.02	SWI/SNF complex subunit SWI3D [Momordica charantia]	[more]

BLAST of CsGy7G010800 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34430.4	9.8e-37	55.03	DNA-binding family protein	[more]
AT1G21700.1	3.0e-09	34.48	SWITCH/sucrose nonfermenting 3C	[more]
AT2G47620.1	9.9e-05	40.74	SWITCH/sucrose nonfermenting 3A	[more]

BLAST of CsGy7G010800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VY05\|SWI3D_ARATH	7.2e-37	55.32	SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3	[more]
sp\|Q9XI07\|SWI3C_ARATH	5.4e-08	34.48	SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1	[more]
sp\|Q92922\|SMRC1_HUMAN	1.2e-04	42.25	SWI/SNF complex subunit SMARCC1 OS=Homo sapiens OX=9606 GN=SMARCC1 PE=1 SV=3	[more]

BLAST of CsGy7G010800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BH30\|A0A1S3BH30_CUCME	1.5e-60	78.42	SWI/SNF complex subunit SWI3D OS=Cucumis melo OX=3656 GN=LOC103489589 PE=4 SV=1	[more]
tr\|A0A2N9IU24\|A0A2N9IU24_FAGSY	4.8e-54	68.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55531 PE=4 SV=1	[more]
tr\|A0A067K099\|A0A067K099_JATCU	7.7e-52	69.19	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18808 PE=4 SV=1	[more]
tr\|A0A2C9UHP5\|A0A2C9UHP5_MANES	6.5e-51	66.31	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G164300 PE=4 SV=...	[more]
tr\|A0A2C9UGJ9\|A0A2C9UGJ9_MANES	6.5e-51	66.31	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G164300 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032451	SMARCC_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G010800.1	CsGy7G010800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032451	SMARCC, C-terminal	PFAM	PF16495	SWIRM-assoc_1	coord: 34..112 e-value: 3.6E-24 score: 84.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..191
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 5..188
None	No IPR available	PANTHER	PTHR12802:SF39	SWI/SNF COMPLEX SUBUNIT SWI3D	coord: 5..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G010800	Cla015933	Watermelon (97103) v1	cgybwmB568
CsGy7G010800	Csa7G267930	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G010800	CSPI07G11550	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G010800	CmoCh11G011300	Cucurbita moschata (Rifu)	cgybcmoB884

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G010800	Cucumber (Gy14) v2	cgybcgybB076
CsGy7G010800	Cucurbita maxima (Rimu)	cgybcmaB901
CsGy7G010800	Cucurbita maxima (Rimu)	cgybcmaB947
CsGy7G010800	Cucurbita maxima (Rimu)	cgybcmaB963
CsGy7G010800	Cucurbita moschata (Rifu)	cgybcmoB930
CsGy7G010800	Cucurbita moschata (Rifu)	cgybcmoB946
CsGy7G010800	Cucurbita pepo (Zucchini)	cgybcpeB913
CsGy7G010800	Cucurbita pepo (Zucchini)	cgybcpeB972
CsGy7G010800	Cucurbita pepo (Zucchini)	cgybcpeB977
CsGy7G010800	Cucumber (Chinese Long) v2	cgybcuB300
CsGy7G010800	Bottle gourd (USVL1VR-Ls)	cgyblsiB458
CsGy7G010800	Bottle gourd (USVL1VR-Ls)	cgyblsiB464
CsGy7G010800	Melon (DHL92) v3.5.1	cgybmeB471
CsGy7G010800	Melon (DHL92) v3.6.1	cgybmedB468
CsGy7G010800	Watermelon (Charleston Gray)	cgybwcgB508
CsGy7G010800	Wild cucumber (PI 183967)	cgybcpiB308
CsGy7G010800	Silver-seed gourd	carcgybB0189
CsGy7G010800	Silver-seed gourd	carcgybB0327
CsGy7G010800	Silver-seed gourd	carcgybB0880
CsGy7G010800	Cucumber (Chinese Long) v3	cgybcucB322
CsGy7G010800	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G010800	Watermelon (97103) v2	cgybwmbB494
CsGy7G010800	Watermelon (97103) v2	cgybwmbB504
CsGy7G010800	Wax gourd	cgybwgoB635
CsGy7G010800	Wax gourd	cgybwgoB656