CmoCh11G011300.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGGTATAAAAGATTATTGTGTTTAGTTGTGCACGATAACTTTGGAATTTACAAGTACAAATTATGTTTATGTTTATTTTTTGGAATTTACATGTACGAATTATGTTTATATTTATTTTATGGAACTATTGGAGATAACCTTATATATAATTTAATAGATTAATTAATTAAAAATATATATATATATTCAAAATATCACTAAAAACTAATATTTTTTAGACCCAAAATTAATTTATTAAAAATAATAAATCCTTTTAATTGGATAATTGAATATGATTTTAGCAGATAAGTTCATTAATTGATATATTTTTATCGACAAAATTAATTGAATAAATAGATGATTATTATTAATTTTAATTTTAATTGATTACTTATGATACATTCATAATGAATGAAGTAATAAAAATTAGTCAAAGACAGTTAGTTGATTATAAATAATCGATTAATTAGTTATGGTAAACCAAAATCAATTAATTAATTAACTATATATTCAAAGTAAAATTACAAATAACTATATTCAAAATAAAATTGAATAACACGAGCAGATCATGGATCTTCTTTCATTTGCTAGGATCGGCCAGAAGTTCTCTGAGGTTTTAGTTCTCTGAGGTTTTAAAATGTGTTGTTCTTTTAGGTTTATATACTGACTGCCTGTGTTATTTATGGTACCTGTTTATTTGTTCATAACAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGGTATCTCGATCAAAGTTGGTTTCGATCGATTTTGATTACATATTAATGAAATTATTACCCCTTCTTTGGGCAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG
BLAST of CmoCh11G011300.1 vs. Swiss-Prot
Match: SWI3D_ARATH (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3) HSP 1 Score: 146.4 bits (368), Expect = 2.9e-34 Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07 Identity = 43/134 (32.09%), Postives = 79/134 (58.96%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. Swiss-Prot
Match: SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 8.8e-07 Identity = 42/140 (30.00%), Postives = 78/140 (55.71%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06 Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3) HSP 1 Score: 53.1 bits (126), Expect = 3.3e-06 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. TrEMBL
Match: A0A067K099_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18808 PE=4 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40 Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. TrEMBL
Match: B9HRP3_POPTR (DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0009s11780g PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 6.1e-39 Identity = 99/151 (65.56%), Postives = 119/151 (78.81%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. TrEMBL
Match: M5VJC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000770mg PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 2.3e-38 Identity = 94/151 (62.25%), Postives = 120/151 (79.47%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. TrEMBL
Match: B9H0P7_POPTR (DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0004s16070g PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38 Identity = 97/150 (64.67%), Postives = 119/150 (79.33%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. TrEMBL
Match: B9RBE0_RICCO (Transcription regulatory protein SWI3, putative OS=Ricinus communis GN=RCOM_1674900 PE=4 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 3.9e-38 Identity = 92/151 (60.93%), Postives = 118/151 (78.15%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. TAIR10
Match: AT4G34430.4 (AT4G34430.4 DNA-binding family protein) HSP 1 Score: 141.7 bits (356), Expect = 4.0e-34 Identity = 87/149 (58.39%), Postives = 111/149 (74.50%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. TAIR10
Match: AT1G21700.1 (AT1G21700.1 SWITCH/sucrose nonfermenting 3C) HSP 1 Score: 57.8 bits (138), Expect = 7.7e-09 Identity = 43/134 (32.09%), Postives = 79/134 (58.96%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. TAIR10
Match: AT2G47620.1 (AT2G47620.1 SWITCH/sucrose nonfermenting 3A) HSP 1 Score: 55.1 bits (131), Expect = 5.0e-08 Identity = 42/140 (30.00%), Postives = 78/140 (55.71%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. NCBI nr
Match: gi|449465389|ref|XP_004150410.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis sativus]) HSP 1 Score: 241.9 bits (616), Expect = 8.1e-61 Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. NCBI nr
Match: gi|659092382|ref|XP_008447039.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo]) HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59 Identity = 131/154 (85.06%), Postives = 141/154 (91.56%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. NCBI nr
Match: gi|643718431|gb|KDP29646.1| (hypothetical protein JCGZ_18808 [Jatropha curcas]) HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40 Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. NCBI nr
Match: gi|802674632|ref|XP_012081763.1| (PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]) HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40 Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of CmoCh11G011300.1 vs. NCBI nr
Match: gi|802674640|ref|XP_012081764.1| (PREDICTED: SWI/SNF complex subunit SWI3D isoform X2 [Jatropha curcas]) HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40 Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
|