CmoCh11G000240 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAAGGCGTCGTCGCCCCATTCTAAATTGGCCAACGAAGGGGTTTTGGAAAACCCTAGCTGCCTTCTCCCTTCCCTGTTTCACCCAATAGGACAGACTCTACGGCCTCCACTAATAGCTCCAATGGTCCATCTCTTTCCTTCTCCCTCCCGTTTTGCGTTCAATGGCGTACGTCAATGTCTGAATTGCATGTTGTTTGTCTTACAGCGGTTTTGATCTGGTGGCAACAGGCGAGAACAAGAAGATCGGGTGGCCCGCTCCTACTCCGACGAAATCTATCTCAAGCTCTTCGTCAAGGTAGGCTTTTTAACAATCACTGTTTCTGCTGAACTAATAGCAGGAGCCAGCACTTGCATTTACAGTTTTCTTTTCTCCGAGAATCTAGTTGATTTGTGTTCGTTTGTTTATGACGAAATAATTAGTTAGTTGACTGGAGGCATCAACCTAATTTTCAAAGCATCAACCCGAACTCCAGCTACTTGTTTTTTATTTTTAAAATTTTATATAACATCTTAGAGACACAATTAAATCGGGTATGTTCTGCACCTATTTTTAAAGAAAAAAAGAAATCTTATATTTCCACACTCAAAATTTACTATTGTTCTCCTATGTATTCCATTCCAGTTTTGGAACGAAAGTAAATTAATAAATGCGAGAATTGTCAATTTTAGTCCAGCGCTATGTTTCAAATATCCAACACCATCTCAACTCTTTGACAAGTGTTTGACATGAATCTAATATACTAATTAAATGTAGGGACGCATATTCAATGAGTATTGGGCTGTTCTTCGTGAACTGCACATAGATACACGACCCAAGCTAAAGTATCCGTGGTTGATTGATTCTTACTTCGATTCCTTTTCGTAGTTTTTCGGCATCTTGCAACTGTAGTAGACAATTGAAGCAACCAACTTTATTGAACGTAAACGTTGTTTTATATTGACACCAAGCTAGGAGCACTCTAGGAATGAGTTCTTTATTTTTGTTACTGAATGCTTGTTTATTACTCCGCCTTGGACTTCATGAATATTGGAGAAATGTGAAAATTGTGTGTCAAAAAATTTCATTCACTTGCTCTACCACATGGTCTCCATTGTTTATTTGTGTTGCTGCAATTAGCGAAAGATACGGAAGTGAAGAATGCCTACTTCCTGATATTCTCACGTCTTTTACTTGTTCGTTATCTCAGTTTGTACATTTTCTTTTGGTGAAAGTTTGTTTTCCTTATCTCTGGTTGTAACTAAGTGAATAATTTTTGGACTAAGTGGTGAGATTAATTCTGCAGATGAAAAGCAAAAAGTCGAAGACAGCTACAACTTCCGTCTCTACTATTGTTGATTTGAAGTCTATCATTCATCAGCATGCAATGTTCTTCGACAAGTTAGTGGAGCTCATCCCTGCAAGATTCTACTTACCTAATGACGAAAATGACAAACCTTGGTTTCAGGGCCTTAGCAACACTGAGAAGGCTTTGGCTAAGAAGGAATCAAAGGAAAATCTTAAGAAAGCTCGAAGAGATCGAATGGATCCTGAAAAGTCAGCTAGATCAACCCTTGATTTGCTGAAGCAAAACTTGGAAAAGAACAAGTTAAAAGATGAAAGTGATGATAATGAAATGGATGTTAAGCCAGTAACGTCTGGGTTGGATGGTGATGTTCAATCAGTTACATATGAAGAGCTTCGACAACGTCTTCATCGAAAGATTGAAGAGTTCCGAGCAAATAGAAATACAGGATGTTCGAATAGGGAAAAGAAGAGGAATGAAAGAAATGAGAGGAGGGAACTTATTCAGAAGAAACGCAAGAGAGAACATGGGCCCGAGGAAAAGAAATTAGCAGGCCACCACTCAAGAGATGAAGTGGAGAAGAATGTAGACGAAGCCTCTAAAGAACTTGCATTCAGTCATGTCAAACTCGGGACTGAAGAAGAGCATGGGAAGAAAAAGAAGAGAAAGCTCTCCAAGTTGGAGGAGCTTGAAAGAGCTAAAAAATTAGACGAAGCAAAGAGAGATCCTGAGAAAGGCGAGATAATCTCAAAGAAGCATTCTTGGAAAGCAGCCACAAGTAGAGCTGCGGGGGCTAAGGTTCACGATGATCCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAGCTAAAGAATGTCGAGAAATGGAAGGATAGGATTGAAACAACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGGTCAGAAAACATTTCACAGAAAATTCATGATAAGAAGATGCGGCGAATTACAAAGAGGGAGAAGAAACTTATGCGTCCTGGCTTTGAAGGTCGTAAAGAAGGTTTCATCAACGGAAGCACCCCATAA CAAGGCGTCGTCGCCCCATTCTAAATTGGCCAACGAAGGGGTTTTGGAAAACCCTAGCTGCCTTCTCCCTTCCCTGTTTCACCCAATAGGACAGACTCTACGGCCTCCACTAATAGCTCCAATGGTCCATCTCTTTCCTTCTCCCTCCCGTTTTGCGTTCAATGGCGTACGTCAATGTCTGAATTGCATGTTGTTTGTCTTACAGCGGTTTTGATCTGGTGGCAACAGGCGAGAACAAGAAGATCGGGTGGCCCGCTCCTACTCCGACGAAATCTATCTCAAGCTCTTCGTCAAGAGACACAATTAAATCGGATGAAAAGCAAAAAGTCGAAGACAGCTACAACTTCCGTCTCTACTATTGTTGATTTGAAGTCTATCATTCATCAGCATGCAATGTTCTTCGACAAGTTAGTGGAGCTCATCCCTGCAAGATTCTACTTACCTAATGACGAAAATGACAAACCTTGGTTTCAGGGCCTTAGCAACACTGAGAAGGCTTTGGCTAAGAAGGAATCAAAGGAAAATCTTAAGAAAGCTCGAAGAGATCGAATGGATCCTGAAAAGTCAGCTAGATCAACCCTTGATTTGCTGAAGCAAAACTTGGAAAAGAACAAGTTAAAAGATGAAAGTGATGATAATGAAATGGATGTTAAGCCAGTAACGTCTGGGTTGGATGGTGATGTTCAATCAGTTACATATGAAGAGCTTCGACAACGTCTTCATCGAAAGATTGAAGAGTTCCGAGCAAATAGAAATACAGGATGTTCGAATAGGGAAAAGAAGAGGAATGAAAGAAATGAGAGGAGGGAACTTATTCAGAAGAAACGCAAGAGAGAACATGGGCCCGAGGAAAAGAAATTAGCAGGCCACCACTCAAGAGATGAAGTGGAGAAGAATGTAGACGAAGCCTCTAAAGAACTTGCATTCAGTCATGTCAAACTCGGGACTGAAGAAGAGCATGGGAAGAAAAAGAAGAGAAAGCTCTCCAAGTTGGAGGAGCTTGAAAGAGCTAAAAAATTAGACGAAGCAAAGAGAGATCCTGAGAAAGGCGAGATAATCTCAAAGAAGCATTCTTGGAAAGCAGCCACAAGTAGAGCTGCGGGGGCTAAGGTTCACGATGATCCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAGCTAAAGAATGTCGAGAAATGGAAGGATAGGATTGAAACAACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGGTCAGAAAACATTTCACAGAAAATTCATGATAAGAAGATGCGGCGAATTACAAAGAGGGAGAAGAAACTTATGCGTCCTGGCTTTGAAGGTCGTAAAGAAGGTTTCATCAACGGAAGCACCCCATAA ATGTCTGAATTGCATGTTGTTTGTCTTACAGCGGTTTTGATCTGGTGGCAACAGGCGAGAACAAGAAGATCGGGTGGCCCGCTCCTACTCCGACGAAATCTATCTCAAGCTCTTCGTCAAGAGACACAATTAAATCGGATGAAAAGCAAAAAGTCGAAGACAGCTACAACTTCCGTCTCTACTATTGTTGATTTGAAGTCTATCATTCATCAGCATGCAATGTTCTTCGACAAGTTAGTGGAGCTCATCCCTGCAAGATTCTACTTACCTAATGACGAAAATGACAAACCTTGGTTTCAGGGCCTTAGCAACACTGAGAAGGCTTTGGCTAAGAAGGAATCAAAGGAAAATCTTAAGAAAGCTCGAAGAGATCGAATGGATCCTGAAAAGTCAGCTAGATCAACCCTTGATTTGCTGAAGCAAAACTTGGAAAAGAACAAGTTAAAAGATGAAAGTGATGATAATGAAATGGATGTTAAGCCAGTAACGTCTGGGTTGGATGGTGATGTTCAATCAGTTACATATGAAGAGCTTCGACAACGTCTTCATCGAAAGATTGAAGAGTTCCGAGCAAATAGAAATACAGGATGTTCGAATAGGGAAAAGAAGAGGAATGAAAGAAATGAGAGGAGGGAACTTATTCAGAAGAAACGCAAGAGAGAACATGGGCCCGAGGAAAAGAAATTAGCAGGCCACCACTCAAGAGATGAAGTGGAGAAGAATGTAGACGAAGCCTCTAAAGAACTTGCATTCAGTCATGTCAAACTCGGGACTGAAGAAGAGCATGGGAAGAAAAAGAAGAGAAAGCTCTCCAAGTTGGAGGAGCTTGAAAGAGCTAAAAAATTAGACGAAGCAAAGAGAGATCCTGAGAAAGGCGAGATAATCTCAAAGAAGCATTCTTGGAAAGCAGCCACAAGTAGAGCTGCGGGGGCTAAGGTTCACGATGATCCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAGCTAAAGAATGTCGAGAAATGGAAGGATAGGATTGAAACAACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGGTCAGAAAACATTTCACAGAAAATTCATGATAAGAAGATGCGGCGAATTACAAAGAGGGAGAAGAAACTTATGCGTCCTGGCTTTGAAGGTCGTAAAGAAGGTTTCATCAACGGAAGCACCCCATAA
BLAST of CmoCh11G000240 vs. TrEMBL
Match: A0A0A0LNJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001420 PE=4 SV=1) HSP 1 Score: 509.6 bits (1311), Expect = 3.4e-141 Identity = 288/350 (82.29%), Postives = 316/350 (90.29%), Query Frame = 1
BLAST of CmoCh11G000240 vs. TrEMBL
Match: A0A0A0LKJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169780 PE=4 SV=1) HSP 1 Score: 486.5 bits (1251), Expect = 3.1e-134 Identity = 274/351 (78.06%), Postives = 306/351 (87.18%), Query Frame = 1
BLAST of CmoCh11G000240 vs. TrEMBL
Match: A0A061EN28_THECC (Caldesmon, putative OS=Theobroma cacao GN=TCM_021036 PE=4 SV=1) HSP 1 Score: 414.5 bits (1064), Expect = 1.5e-112 Identity = 237/352 (67.33%), Postives = 289/352 (82.10%), Query Frame = 1
BLAST of CmoCh11G000240 vs. TrEMBL
Match: B9RJ85_RICCO (Caldesmon, putative OS=Ricinus communis GN=RCOM_1032260 PE=4 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 7.7e-109 Identity = 227/346 (65.61%), Postives = 284/346 (82.08%), Query Frame = 1
BLAST of CmoCh11G000240 vs. TrEMBL
Match: A0A067F5L8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018770mg PE=4 SV=1) HSP 1 Score: 401.4 bits (1030), Expect = 1.3e-108 Identity = 222/344 (64.53%), Postives = 278/344 (80.81%), Query Frame = 1
BLAST of CmoCh11G000240 vs. TAIR10
Match: AT5G05210.1 (AT5G05210.1 Surfeit locus protein 6) HSP 1 Score: 239.6 bits (610), Expect = 3.3e-63 Identity = 181/390 (46.41%), Postives = 231/390 (59.23%), Query Frame = 1
BLAST of CmoCh11G000240 vs. TAIR10
Match: AT2G27750.1 (AT2G27750.1 Surfeit locus protein 6) HSP 1 Score: 130.6 bits (327), Expect = 2.2e-30 Identity = 89/190 (46.84%), Postives = 126/190 (66.32%), Query Frame = 1
BLAST of CmoCh11G000240 vs. NCBI nr
Match: gi|659128866|ref|XP_008464410.1| (PREDICTED: ribosomal RNA-processing protein 14-C [Cucumis melo]) HSP 1 Score: 518.5 bits (1334), Expect = 1.1e-143 Identity = 293/350 (83.71%), Postives = 318/350 (90.86%), Query Frame = 1
BLAST of CmoCh11G000240 vs. NCBI nr
Match: gi|449440532|ref|XP_004138038.1| (PREDICTED: ribosomal RNA-processing protein 14-C [Cucumis sativus]) HSP 1 Score: 509.6 bits (1311), Expect = 4.9e-141 Identity = 288/350 (82.29%), Postives = 316/350 (90.29%), Query Frame = 1
BLAST of CmoCh11G000240 vs. NCBI nr
Match: gi|449458870|ref|XP_004147169.1| (PREDICTED: surfeit locus protein 6-like [Cucumis sativus]) HSP 1 Score: 486.5 bits (1251), Expect = 4.4e-134 Identity = 274/351 (78.06%), Postives = 306/351 (87.18%), Query Frame = 1
BLAST of CmoCh11G000240 vs. NCBI nr
Match: gi|659121512|ref|XP_008460697.1| (PREDICTED: surfeit locus protein 6 homolog [Cucumis melo]) HSP 1 Score: 484.6 bits (1246), Expect = 1.7e-133 Identity = 275/351 (78.35%), Postives = 304/351 (86.61%), Query Frame = 1
BLAST of CmoCh11G000240 vs. NCBI nr
Match: gi|590660105|ref|XP_007035310.1| (Caldesmon, putative [Theobroma cacao]) HSP 1 Score: 414.5 bits (1064), Expect = 2.1e-112 Identity = 237/352 (67.33%), Postives = 289/352 (82.10%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |