CSPI01G00410 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGAGGGTTCCGGCGCCACATTCGAATCGCAAATTCTCGTCGACCCTTCCCGAATTGTCAATAGAGAAGGAGAAGGTACTGAAAAACCCTATTTCCCTTCTTCCTCGACGCTCTCATCACTTCCTGACCAGAAACTATTTCAGTTTTCCATATCTGAACTATATTTTGCGTCTTTCAGGAGATTTGATCTGATAGGATCAAGCAACTGTAACAAGTCCGAGAGGACCGCACCTAGTCCGGCCATATCTATCTCAAGGTAGGATCTTTATAATAACAACTACTACGTACAAAATTCCCCTGAACCGAACTAATTTTAGTATCGAAAACTTGCTTTTACAGTTTTCTTTTATCATTTGGGTGCTTCTTTTTTTTTTTTAATGTTAAAGTAGTTTGTAATCGGAGGAGTAGAGTTCTTTATCTAATTTTCACAGCACCAACTCGAATTCCCGCCATTGATGTATTTTAGTCTTTTAACATTTTTTTTTTTAACAACTAATGGGAAAGTTCAAATCGGATTTGTTCTGCACCTACATTTTAGTTTGACACCTTATTTACAAATATGCAACGCTGTTTAATCCGCTTGACAATTGTTTGACATGTATCGAATGTACTGAATAAACGTGAGCACACATATTCATTAAGCTTTGGAGCGTTCTTTATAGCATGTAGTAGAGATTTGAAGCACATTTGACTATATCGAACAGAATCATCGTTTTGTATTTGACACCCTTTGTCAATATTTGAAAATGGAAAATCAGCCTTCTTTCTTATCATTGATGTGTACACTGTGTGCTTGTTAATTCCTTCACTTTGAAAATTCTTGAATTTGTCAACACTTTTTATCCCGTTGCTTTACCACGTGGTCTCCATTGCTTGTGTGTTTTGCTGCAAATGAAGGATTTTGGAAACGAAGAATGATTGATTGCTTACCGTTGTTTTCATTTTTTTTACTTGTTCATATTCCCATTTTGCTTATTTGTTTTTTGTGAATAATTGTTTATCTCACCCCTGGTTTTTAACTCATTGATTTTTTATTTCTTTTACATTTTAACATATCAATTTTAAGGACTAAGTGGCGAGATTATTTGTGCAGATGAAAGTAAAAAAGTTGAAGTCTGCTACAACTTCTAATACTAATGTTGATTTGAAGTCCATCATTCATCAGCATGCCCTGTTCATCGACAAGTTAGTGGAGCTCATCCCTGCGAGGTTCTATTTATCTAATGACGAAAAGGAGAAACCTTGGTTTCAAGGCCTTAGCAAGAATGAGAAGGCTTTGGCCAAGAAGGAATCGAAAGAAAATCTTAAGAAAGTAAAAAGAGATCGCATGGATCCAGAGAAGTCTGATAAATCAACCGTTGATTTGCTTAAGCAAAACTTGGAAAAGAACAAGTTAAGGATTGAAACTAGTGAAAATAAAAGGGATGATAAGCCAATGACATCTGGGTGGGAGGATGATCAGTCAGTGACATATGAAGAACTTCGGCAACGTCTGCACCAAAAGATTGAAGAGTTCCGAGCAAATAGAAATTCAGAATGTTCAAATAGAGAGAAGAAGAGGAAGGAAAGAAATGAAAGGAGGGAACTGATTCATAAGAAACAGAAGAGAGAAAATGGGCTCGAGGAAAAGAAATCAACAGGCTATCCCTCAAAAGATGAAGTTGAAAAGAATGTAGTTGAAGCCTCTAAAGAACTTGCCTTCAGTCACGTCAAACTGGGGTCCGAAGAAGAGCATGGGAAGAAAAAGAAAAGAAAGTTCTCCAAGTTGGAGGAGCTTGACAGAGCTAAAAAATTGGAGGAAGCAAAGAAGGATCCTGAGAAGGGCGAAATAATCTCAAAGAAGCATTCTTGGAAAGCAGCAACGAATAGGGCTGCTGGGTTAAAGGTTCACGATGATGCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAACTGAAGAATGTTCAGAAATGGAAAGAAAGGATTGAAACTACACACAAGATGAAAGCAGAAAGACAGCAAAAGAGATCAGATAACATAGCACAGAAAATTCAAGATAAGAAAATGCGGAAAATTGCAAAGAGGGAGAAGAAGCTTATGCGGCCCGGCTTTGAAGGTCGCAAGGAAGGTTTCATCAACGAAGGTACGGCTTAAGCCAAAGCTGGTTTTAACCTTGCAATGTTGTTGCAATCTTTGTTTTGATTTAGTATATTTAGGAAATCCAACCAAAACATATATATGTTCATTTCTGAGTAAAACGCTTTTTTTTTTTTCTGTTCTTCATGTGAAAGAAAAGTTACGAAGAACGAGAAGCCAAAAAGTAATGAAAATAGAGAGATTTAAGATAGCATTTTGTGTCTTCCAAGTAATATAGAATTTTCTATCCCTTATCCGTTCTATTGGGCTCTTTAATTAACGCCCTCCTTCAGTGTGATCTTATTATCATGAAAGTTCTTTGCTAACCCAATACTTCACCAACACATTTGTATCATGTGAGAATAATGTATGAGATTATTTGAAGTGAAAAACCACTCTTTATATATATGTGTGTGCGCCATCTCCTCCTAAATCAAGTTACTCAC ATGAAAGTAAAAAAGTTGAAGTCTGCTACAACTTCTAATACTAATGTTGATTTGAAGTCCATCATTCATCAGCATGCCCTGTTCATCGACAAGTTAGTGGAGCTCATCCCTGCGAGGTTCTATTTATCTAATGACGAAAAGGAGAAACCTTGGTTTCAAGGCCTTAGCAAGAATGAGAAGGCTTTGGCCAAGAAGGAATCGAAAGAAAATCTTAAGAAAGTAAAAAGAGATCGCATGGATCCAGAGAAGTCTGATAAATCAACCGTTGATTTGCTTAAGCAAAACTTGGAAAAGAACAAGTTAAGGATTGAAACTAGTGAAAATAAAAGGGATGATAAGCCAATGACATCTGGGTGGGAGGATGATCAGTCAGTGACATATGAAGAACTTCGGCAACGTCTGCACCAAAAGATTGAAGAGTTCCGAGCAAATAGAAATTCAGAATGTTCAAATAGAGAGAAGAAGAGGAAGGAAAGAAATGAAAGGAGGGAACTGATTCATAAGAAACAGAAGAGAGAAAATGGGCTCGAGGAAAAGAAATCAACAGGCTATCCCTCAAAAGATGAAGTTGAAAAGAATGTAGTTGAAGCCTCTAAAGAACTTGCCTTCAGTCACGTCAAACTGGGGTCCGAAGAAGAGCATGGGAAGAAAAAGAAAAGAAAGTTCTCCAAGTTGGAGGAGCTTGACAGAGCTAAAAAATTGGAGGAAGCAAAGAAGGATCCTGAGAAGGGCGAAATAATCTCAAAGAAGCATTCTTGGAAAGCAGCAACGAATAGGGCTGCTGGGTTAAAGGTTCACGATGATGCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAACTGAAGAATGTTCAGAAATGGAAAGAAAGGATTGAAACTACACACAAGATGAAAGCAGAAAGACAGCAAAAGAGATCAGATAACATAGCACAGAAAATTCAAGATAAGAAAATGCGGAAAATTGCAAAGAGGGAGAAGAAGCTTATGCGGCCCGGCTTTGAAGGTCGCAAGGAAGGTTTCATCAACGAAGGTACGGCTTAA ATGAAAGTAAAAAAGTTGAAGTCTGCTACAACTTCTAATACTAATGTTGATTTGAAGTCCATCATTCATCAGCATGCCCTGTTCATCGACAAGTTAGTGGAGCTCATCCCTGCGAGGTTCTATTTATCTAATGACGAAAAGGAGAAACCTTGGTTTCAAGGCCTTAGCAAGAATGAGAAGGCTTTGGCCAAGAAGGAATCGAAAGAAAATCTTAAGAAAGTAAAAAGAGATCGCATGGATCCAGAGAAGTCTGATAAATCAACCGTTGATTTGCTTAAGCAAAACTTGGAAAAGAACAAGTTAAGGATTGAAACTAGTGAAAATAAAAGGGATGATAAGCCAATGACATCTGGGTGGGAGGATGATCAGTCAGTGACATATGAAGAACTTCGGCAACGTCTGCACCAAAAGATTGAAGAGTTCCGAGCAAATAGAAATTCAGAATGTTCAAATAGAGAGAAGAAGAGGAAGGAAAGAAATGAAAGGAGGGAACTGATTCATAAGAAACAGAAGAGAGAAAATGGGCTCGAGGAAAAGAAATCAACAGGCTATCCCTCAAAAGATGAAGTTGAAAAGAATGTAGTTGAAGCCTCTAAAGAACTTGCCTTCAGTCACGTCAAACTGGGGTCCGAAGAAGAGCATGGGAAGAAAAAGAAAAGAAAGTTCTCCAAGTTGGAGGAGCTTGACAGAGCTAAAAAATTGGAGGAAGCAAAGAAGGATCCTGAGAAGGGCGAAATAATCTCAAAGAAGCATTCTTGGAAAGCAGCAACGAATAGGGCTGCTGGGTTAAAGGTTCACGATGATGCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAACTGAAGAATGTTCAGAAATGGAAAGAAAGGATTGAAACTACACACAAGATGAAAGCAGAAAGACAGCAAAAGAGATCAGATAACATAGCACAGAAAATTCAAGATAAGAAAATGCGGAAAATTGCAAAGAGGGAGAAGAAGCTTATGCGGCCCGGCTTTGAAGGTCGCAAGGAAGGTTTCATCAACGAAGGTACGGCTTAA
BLAST of CSPI01G00410 vs. TrEMBL
Match: A0A0A0LNJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001420 PE=4 SV=1) HSP 1 Score: 631.3 bits (1627), Expect = 6.9e-178 Identity = 347/349 (99.43%), Postives = 348/349 (99.71%), Query Frame = 1
BLAST of CSPI01G00410 vs. TrEMBL
Match: A0A0A0LKJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169780 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 2.9e-128 Identity = 262/350 (74.86%), Postives = 301/350 (86.00%), Query Frame = 1
BLAST of CSPI01G00410 vs. TrEMBL
Match: A0A067F5L8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018770mg PE=4 SV=1) HSP 1 Score: 384.0 bits (985), Expect = 1.9e-103 Identity = 216/350 (61.71%), Postives = 283/350 (80.86%), Query Frame = 1
BLAST of CSPI01G00410 vs. TrEMBL
Match: A0A061EN28_THECC (Caldesmon, putative OS=Theobroma cacao GN=TCM_021036 PE=4 SV=1) HSP 1 Score: 382.5 bits (981), Expect = 5.6e-103 Identity = 222/350 (63.43%), Postives = 282/350 (80.57%), Query Frame = 1
BLAST of CSPI01G00410 vs. TrEMBL
Match: B9HSV6_POPTR (Nucleolar matrix family protein OS=Populus trichocarpa GN=POPTR_0010s07460g PE=4 SV=2) HSP 1 Score: 380.2 bits (975), Expect = 2.8e-102 Identity = 227/348 (65.23%), Postives = 275/348 (79.02%), Query Frame = 1
BLAST of CSPI01G00410 vs. TAIR10
Match: AT5G05210.1 (AT5G05210.1 Surfeit locus protein 6) HSP 1 Score: 224.9 bits (572), Expect = 7.5e-59 Identity = 152/304 (50.00%), Postives = 208/304 (68.42%), Query Frame = 1
BLAST of CSPI01G00410 vs. TAIR10
Match: AT2G27750.1 (AT2G27750.1 Surfeit locus protein 6) HSP 1 Score: 128.3 bits (321), Expect = 9.6e-30 Identity = 87/189 (46.03%), Postives = 125/189 (66.14%), Query Frame = 1
BLAST of CSPI01G00410 vs. NCBI nr
Match: gi|449440532|ref|XP_004138038.1| (PREDICTED: ribosomal RNA-processing protein 14-C [Cucumis sativus]) HSP 1 Score: 631.3 bits (1627), Expect = 9.9e-178 Identity = 347/349 (99.43%), Postives = 348/349 (99.71%), Query Frame = 1
BLAST of CSPI01G00410 vs. NCBI nr
Match: gi|659128866|ref|XP_008464410.1| (PREDICTED: ribosomal RNA-processing protein 14-C [Cucumis melo]) HSP 1 Score: 605.1 bits (1559), Expect = 7.6e-170 Identity = 333/348 (95.69%), Postives = 342/348 (98.28%), Query Frame = 1
BLAST of CSPI01G00410 vs. NCBI nr
Match: gi|659121512|ref|XP_008460697.1| (PREDICTED: surfeit locus protein 6 homolog [Cucumis melo]) HSP 1 Score: 476.9 bits (1226), Expect = 3.1e-131 Identity = 269/349 (77.08%), Postives = 302/349 (86.53%), Query Frame = 1
BLAST of CSPI01G00410 vs. NCBI nr
Match: gi|449458870|ref|XP_004147169.1| (PREDICTED: surfeit locus protein 6-like [Cucumis sativus]) HSP 1 Score: 466.5 bits (1199), Expect = 4.2e-128 Identity = 262/350 (74.86%), Postives = 301/350 (86.00%), Query Frame = 1
BLAST of CSPI01G00410 vs. NCBI nr
Match: gi|568823645|ref|XP_006466221.1| (PREDICTED: surfeit locus protein 6 homolog [Citrus sinensis]) HSP 1 Score: 385.6 bits (989), Expect = 9.4e-104 Identity = 217/350 (62.00%), Postives = 283/350 (80.86%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |