CmoCh09G012380 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G012380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP synthase subunit delta, sodium ion specific
LocationCmo_Chr09 : 10615482 .. 10616204 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCTCTTCACCAAACCGCCGCCTCACTCCAGGCCAAACTCCTTCCAACAATCCGAATCTCCCGGACTACTCCGGCAAACCTCTCTTTCTCCGCCACTTTTCTTTCTGGAAGACTCCGCCTCGGCCAACACCGCTCTCACGGCGGCGCTAGAATGTCCGCCTCGGCTGCTGGAAGCTACGCTGCGGCGTTGGCCGAAGTCGCTGCGTCTAACAACACGCTGGATGCAACAAGCGGCGATGTCGAGAAGATCGAGAGCGTTTTCGCGGATTCGCAGGTGTTCGATTGCTTCGCGAATCCGACGATTAGCATCGAGAAGAAACTTGCGTTGGTGGATGAGATCGCGGCGTCGTCGTCTCTACTGCCGCATACGGCGAATTTCTTGAAGATCCTAGTGGACGCAAAGAGAATCGATATCGTGAAGGAGATCGTGACGGAGTTCGAATCGGTTTACAACAAAATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCCGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGTGGAGCTAAGAATGTGAGGATCAAGACGCAGATTGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTAAGCGTCAAGAAACAGCTTGAGGAAATTGCTTCTCAGCTTGATCTTGGTAATATTCAACTGGCTGTATAA

mRNA sequence

ATGGCCGCTCTTCACCAAACCGCCGCCTCACTCCAGGCCAAACTCCTTCCAACAATCCGAATCTCCCGGACTACTCCGGCAAACCTCTCTTTCTCCGCCACTTTTCTTTCTGGAAGACTCCGCCTCGGCCAACACCGCTCTCACGGCGGCGCTAGAATGTCCGCCTCGGCTGCTGGAAGCTACGCTGCGGCGTTGGCCGAAGTCGCTGCGTCTAACAACACGCTGGATGCAACAAGCGGCGATGTCGAGAAGATCGAGAGCGTTTTCGCGGATTCGCAGGTGTTCGATTGCTTCGCGAATCCGACGATTAGCATCGAGAAGAAACTTGCGTTGGTGGATGAGATCGCGGCGTCGTCGTCTCTACTGCCGCATACGGCGAATTTCTTGAAGATCCTAGTGGACGCAAAGAGAATCGATATCGTGAAGGAGATCGTGACGGAGTTCGAATCGGTTTACAACAAAATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCCGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGTGGAGCTAAGAATGTGAGGATCAAGACGCAGATTGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTAAGCGTCAAGAAACAGCTTGAGGAAATTGCTTCTCAGCTTGATCTTGGTAATATTCAACTGGCTGTATAA

Coding sequence (CDS)

ATGGCCGCTCTTCACCAAACCGCCGCCTCACTCCAGGCCAAACTCCTTCCAACAATCCGAATCTCCCGGACTACTCCGGCAAACCTCTCTTTCTCCGCCACTTTTCTTTCTGGAAGACTCCGCCTCGGCCAACACCGCTCTCACGGCGGCGCTAGAATGTCCGCCTCGGCTGCTGGAAGCTACGCTGCGGCGTTGGCCGAAGTCGCTGCGTCTAACAACACGCTGGATGCAACAAGCGGCGATGTCGAGAAGATCGAGAGCGTTTTCGCGGATTCGCAGGTGTTCGATTGCTTCGCGAATCCGACGATTAGCATCGAGAAGAAACTTGCGTTGGTGGATGAGATCGCGGCGTCGTCGTCTCTACTGCCGCATACGGCGAATTTCTTGAAGATCCTAGTGGACGCAAAGAGAATCGATATCGTGAAGGAGATCGTGACGGAGTTCGAATCGGTTTACAACAAAATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCCGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGTGGAGCTAAGAATGTGAGGATCAAGACGCAGATTGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTAAGCGTCAAGAAACAGCTTGAGGAAATTGCTTCTCAGCTTGATCTTGGTAATATTCAACTGGCTGTATAA
Homology
[Close]
BLAST of CmoCh09G012380 vs. Swiss-Prot
Match: ATPD_ARATH (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana GN=ATPD PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-66
Identity = 147/240 (61.25%), Postives = 184/240 (76.67%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPT-IRISRTTPANLSFSATFLSGRLRLGQHRSHGGARMSASAAG 60
           MA+L QT  SLQ+KL P+  +I+R+ P   +F        +R+    +  GARMSA+AA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLPLRKTFP-------IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASS 120
           SYA ALA+VA  N+T++ T  D+EK+E VF+D QV + FANPTI++EKK  ++D+I  SS
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAK 180
           SL  HT+NFL +LVDA RI+IV EIV EFE VYNK+T+T+LA V SVV LE   LAQIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLA 240
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IASQL+LG IQLA
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

[Close]
BLAST of CmoCh09G012380 vs. Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.1e-66
Identity = 147/248 (59.27%), Postives = 185/248 (74.60%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATF----LSGRLRLGQHRSHG----GAR 60
           MAAL QT  + Q++  P  +I     A LSFS       L+ +LR  +    G    G++
Sbjct: 1   MAALQQTPITFQSRSPPPTQIISGPTAKLSFSGGLKLPKLTIKLRSNRTSRRGGGAAGSK 60

Query: 61  MSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALV 120
           M ASAAGSYA ALA++A SN TL+ T+ D+EKIE +  D  VF+ F +P +  EKK  LV
Sbjct: 61  MVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELV 120

Query: 121 DEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQ 180
           DEI +SSS+ PH ANFL ILVD KR++++KEIV EFE VYN +T+TELAVV+SVV LE Q
Sbjct: 121 DEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQ 180

Query: 181 HLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLD 240
           HLAQIAK VQ+L+G+KNVRIKT ID SLVAGFT+R+GNSGSKLID+SVKKQLE+IA+QL+
Sbjct: 181 HLAQIAKGVQRLTGSKNVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVKKQLEDIAAQLE 240

[Close]
BLAST of CmoCh09G012380 vs. Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.5e-64
Identity = 146/252 (57.94%), Postives = 187/252 (74.21%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLP--TIRISRTTPANLSFSATFLSGRLRLG-------QHRSHGGA 60
           MA+L  T ASL +K +P  T  ++R    NLS S+TF S +L+L          RS GGA
Sbjct: 1   MASLQHTTASLHSKHIPKTTNILTRKPILNLS-SSTFYSPKLKLKLKLPLTKTRRSTGGA 60

Query: 61  ---RMSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKK 120
              RMS+ AAGSYAAALA++A SNNTLDA + D +KIE +F+D +VFD F++P +    K
Sbjct: 61  LGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTK 120

Query: 121 LALVDEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVP 180
             L+ E A +S   PHT NFL +L+D+KRID++ +I+ EFE VYN +T+TEL VV+SVV 
Sbjct: 121 RQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVK 180

Query: 181 LEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA 240
           LE  HLAQIAKQVQKL+GAK VR KT +DPSLVAGFTVR+GN+GSK ID+SVK++LEEIA
Sbjct: 181 LESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIA 240

[Close]
BLAST of CmoCh09G012380 vs. Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-58
Identity = 137/249 (55.02%), Postives = 178/249 (71.49%), Query Frame = 1 

Query: 3   ALHQTAASLQAKLLPTIRISRTTPANLSFS---ATFLSGRLRLGQH-----RSHGGA--- 62
           AL     +  A L  +   S   P +LSFS   ATF   RL++        +  GGA   
Sbjct: 9   ALQSRTTTAVAALSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGT 68

Query: 63  RMSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLAL 122
           RM  S A  YA+ALA+VA    TL+AT+ DVEK+  +F++  V+  FANP ISI+ K ++
Sbjct: 69  RMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSV 128

Query: 123 VDEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQ 182
           +DEI  +S L PHTANF+ IL+D++RI++VKEI+ EFE V+NKIT TE+AVV+SVV LE 
Sbjct: 129 LDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLEN 188

Query: 183 QHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQL 241
            HLAQIAK VQK++GAKNVRIKT IDPSLVAGFT+R+GN GSKL+D+SVKKQLEEIA+QL
Sbjct: 189 DHLAQIAKGVQKITGAKNVRIKTVIDPSLVAGFTIRYGNEGSKLVDMSVKKQLEEIAAQL 248

[Close]
BLAST of CmoCh09G012380 vs. Swiss-Prot
Match: ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.4e-50
Identity = 108/203 (53.20%), Postives = 146/203 (71.92%), Query Frame = 1 

Query: 40  LRLGQHRSHGGA--RMSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDC 99
           LRL   R  G      + +AA SYA+AL+EVA  N TL+ T  D+EK++ +FAD  V + 
Sbjct: 45  LRLAPPRRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEF 104

Query: 100 FANPTISIEKKLALVDEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITN 159
           F NPT+  E+K AL+DEIA S  L PH  NF+ ++VD  R  I+ EIV EFE+++N +T 
Sbjct: 105 FDNPTVPREEKTALIDEIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTG 164

Query: 160 TELAVVSSVVPLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLID 219
           TE+A V+SVV LE Q LAQIA+ VQK++GAKNVR+KTQ+DP L+AGFTV++G  GS LID
Sbjct: 165 TEVATVTSVVQLESQDLAQIAQHVQKMTGAKNVRLKTQLDPELIAGFTVQYGRDGSSLID 224

Query: 220 LSVKKQLEEIASQLDLGNIQLAV 241
           +SV+KQ+EEI S+ +L ++ L V
Sbjct: 225 MSVRKQIEEITSEFELPDVPLEV 247

[Close]
BLAST of CmoCh09G012380 vs. TrEMBL
Match: A0A0A0K7Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016970 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 5.3e-105
Identity = 217/240 (90.42%), Postives = 226/240 (94.17%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFLSGRLRLGQHRSHGGARMSASAAGS 60
           MAALHQT ASLQAKLLPT RISRTTP NLSFSATF S  LRL QHRSHGGARMSA+AAGS
Sbjct: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFAD +VFD FANPTIS+EKK A+VDE+A+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120

Query: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180
           L PH+ANFLKILVDAKRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]
BLAST of CmoCh09G012380 vs. TrEMBL
Match: A0A061F8S8_THECC (ATP synthase delta-subunit protein OS=Theobroma cacao GN=TCM_032365 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.0e-80
Identity = 174/242 (71.90%), Postives = 204/242 (84.30%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTTPA-NLSFSATFLSGRLRLGQHRS-HGGARMSASAA 60
           MA+  QT+ SLQ+KLLP+ ++ R  P+ NLSFSATF S  L+L   R   GGA+MSA+AA
Sbjct: 1   MASFQQTSISLQSKLLPSSQLPRALPSLNLSFSATFPS--LKLSTTRPLQGGAKMSATAA 60

Query: 61  GSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAAS 120
            SYA ALA+VA SNNTLD+TS D+E++E +F+D QV D FANPTI   KK  ++D+I  S
Sbjct: 61  SSYALALADVAKSNNTLDSTSSDIEQVEKIFSDPQVIDFFANPTIDAIKKRQVLDDIVKS 120

Query: 121 SSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIA 180
           S L PHTANFL ILVDAKRIDI+KEIV EFESV+NK+T+TELAVVSSVVPLE QHLAQIA
Sbjct: 121 SGLQPHTANFLNILVDAKRIDIIKEIVKEFESVFNKLTDTELAVVSSVVPLESQHLAQIA 180

Query: 181 KQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQL 240
           KQVQKL+GAKNVRIKT IDPSLVAGFT+R+GNSGSKLID+SVKKQLEEIA+QLDLG+IQL
Sbjct: 181 KQVQKLTGAKNVRIKTAIDPSLVAGFTIRYGNSGSKLIDMSVKKQLEEIAAQLDLGDIQL 240

[Close]
BLAST of CmoCh09G012380 vs. TrEMBL
Match: A0A0D2NHU9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G037600 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 173/242 (71.49%), Postives = 201/242 (83.06%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTTPA-NLSFSATFLSGRLRLGQHRS-HGGARMSASAA 60
           MA+L Q + SLQ KLL + +  R+ P+ NLSFSATF S  L+L   R  HGGA+MSASAA
Sbjct: 1   MASLQQASISLQPKLLSSSQHPRSLPSLNLSFSATFPS--LKLSTTRPLHGGAKMSASAA 60

Query: 61  GSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAAS 120
            SYA ALA+VA SNNTLDATS DVEK+E +F+D QV   F NPTI + KK  ++DEI +S
Sbjct: 61  SSYATALADVAKSNNTLDATSSDVEKVEKIFSDPQVLQFFTNPTIDVLKKRQVLDEIVSS 120

Query: 121 SSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIA 180
           S L PHTANFL ILVDAKRID++KEIV EFE VYN++T+TELAVVSSVV LE QHLAQIA
Sbjct: 121 SELQPHTANFLNILVDAKRIDLIKEIVKEFELVYNELTDTELAVVSSVVKLESQHLAQIA 180

Query: 181 KQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQL 240
           KQVQKL+GAKNVRIKT IDPSLVAGFT+R+G+SGSKLID+SVKKQLEEIA+QLDLG+IQL
Sbjct: 181 KQVQKLTGAKNVRIKTMIDPSLVAGFTIRYGSSGSKLIDMSVKKQLEEIAAQLDLGDIQL 240

[Close]
BLAST of CmoCh09G012380 vs. TrEMBL
Match: A0A067JS97_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01954 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.6e-77
Identity = 173/247 (70.04%), Postives = 202/247 (81.78%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTT----PANLSFSATFLSGRLR-LGQHRSHGG----A 60
           MAAL  T  SLQ+K+ P+ R+S+T     P +LSFS+TF S  L     HR+ GG    A
Sbjct: 1   MAALQNTPISLQSKIPPSARLSKTLSSQKPLSLSFSSTFPSFNLSSTTAHRARGGGATGA 60

Query: 61  RMSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLAL 120
           +MSA+AA SYAAALA+VA SNNTLD+T+ D+EKIE +F+D QV D F+NPTIS+EKK  +
Sbjct: 61  KMSATAAASYAAALADVAKSNNTLDSTAADIEKIEKLFSDPQVVDFFSNPTISVEKKREV 120

Query: 121 VDEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQ 180
           VDEIA S +L PHTANFL IL+DAKRID+ KEIV EFE VYNKIT+TELA V+SVV LE 
Sbjct: 121 VDEIAKSLALQPHTANFLNILIDAKRIDLAKEIVKEFELVYNKITDTELATVTSVVKLES 180

Query: 181 QHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQL 239
           QHLAQIAKQVQKL+GAKNVRIKT IDPSLVAGFTVRFG+SGSKLIDLSVKKQLEEIA+QL
Sbjct: 181 QHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTVRFGSSGSKLIDLSVKKQLEEIAAQL 240

[Close]
BLAST of CmoCh09G012380 vs. TrEMBL
Match: A0A059BZG6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04149 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.8e-76
Identity = 168/246 (68.29%), Postives = 199/246 (80.89%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRT-TPANLSFSATFLS-----GRLRLGQHRSHGGARMS 60
           MAAL Q   SLQ+K+ P+++      P+NLSFSATF S       L L    +  GARMS
Sbjct: 1   MAALQQIPISLQSKI-PSLKTQFLHKPSNLSFSATFPSLKLAPAHLHLRPSSAASGARMS 60

Query: 61  ASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDE 120
           A+A GSYAAALA+VA SNNTLDATS DVEKIE +F+D  VF  F+NPT+ +EKK  +VDE
Sbjct: 61  ATAGGSYAAALADVAKSNNTLDATSADVEKIEKIFSDEGVFKFFSNPTVDLEKKRGMVDE 120

Query: 121 IAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHL 180
           I+ASS L PHTANFL IL++AKRID++K+IV EFE VYN++T TELA+VSSVV LE QHL
Sbjct: 121 ISASSGLQPHTANFLNILIEAKRIDLIKDIVKEFEMVYNRLTETELALVSSVVKLEPQHL 180

Query: 181 AQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLG 240
           AQIAKQVQKL+GAKNVRIKT IDPSLVAGFT+R+G+SGSKLID+SVKKQLE+IA QLDLG
Sbjct: 181 AQIAKQVQKLTGAKNVRIKTAIDPSLVAGFTIRYGSSGSKLIDMSVKKQLEDIAEQLDLG 240

[Close]
BLAST of CmoCh09G012380 vs. TAIR10
Match: AT4G09650.1 (AT4G09650.1 ATP synthase delta-subunit gene)

HSP 1 Score: 253.8 bits (647), Expect = 1.0e-67
Identity = 147/240 (61.25%), Postives = 184/240 (76.67%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPT-IRISRTTPANLSFSATFLSGRLRLGQHRSHGGARMSASAAG 60
           MA+L QT  SLQ+KL P+  +I+R+ P   +F        +R+    +  GARMSA+AA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLPLRKTFP-------IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASS 120
           SYA ALA+VA  N+T++ T  D+EK+E VF+D QV + FANPTI++EKK  ++D+I  SS
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAK 180
           SL  HT+NFL +LVDA RI+IV EIV EFE VYNK+T+T+LA V SVV LE   LAQIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLA 240
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IASQL+LG IQLA
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

[Close]
BLAST of CmoCh09G012380 vs. NCBI nr
Match: gi|659126215|ref|XP_008463069.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo])

HSP 1 Score: 392.5 bits (1007), Expect = 5.3e-106
Identity = 219/240 (91.25%), Postives = 227/240 (94.58%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFLSGRLRLGQHRSHGGARMSASAAGS 60
           MAALHQTAASLQAKLLPT RISRTTP NLSFSATF S  LRLGQHRSHGGARMSA+AAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFAD QV D F+NPTIS+EKK A+VDEIA+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180
           L PH+ANFLKILVDAKRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]
BLAST of CmoCh09G012380 vs. NCBI nr
Match: gi|449441205|ref|XP_004138373.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 7.6e-105
Identity = 217/240 (90.42%), Postives = 226/240 (94.17%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFLSGRLRLGQHRSHGGARMSASAAGS 60
           MAALHQT ASLQAKLLPT RISRTTP NLSFSATF S  LRL QHRSHGGARMSA+AAGS
Sbjct: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFAD +VFD FANPTIS+EKK A+VDE+A+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120

Query: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180
           L PH+ANFLKILVDAKRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]
BLAST of CmoCh09G012380 vs. NCBI nr
Match: gi|590611778|ref|XP_007022200.1| (ATP synthase delta-subunit gene [Theobroma cacao])

HSP 1 Score: 307.0 bits (785), Expect = 2.9e-80
Identity = 174/242 (71.90%), Postives = 204/242 (84.30%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTTPA-NLSFSATFLSGRLRLGQHRS-HGGARMSASAA 60
           MA+  QT+ SLQ+KLLP+ ++ R  P+ NLSFSATF S  L+L   R   GGA+MSA+AA
Sbjct: 1   MASFQQTSISLQSKLLPSSQLPRALPSLNLSFSATFPS--LKLSTTRPLQGGAKMSATAA 60

Query: 61  GSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAAS 120
            SYA ALA+VA SNNTLD+TS D+E++E +F+D QV D FANPTI   KK  ++D+I  S
Sbjct: 61  SSYALALADVAKSNNTLDSTSSDIEQVEKIFSDPQVIDFFANPTIDAIKKRQVLDDIVKS 120

Query: 121 SSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIA 180
           S L PHTANFL ILVDAKRIDI+KEIV EFESV+NK+T+TELAVVSSVVPLE QHLAQIA
Sbjct: 121 SGLQPHTANFLNILVDAKRIDIIKEIVKEFESVFNKLTDTELAVVSSVVPLESQHLAQIA 180

Query: 181 KQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQL 240
           KQVQKL+GAKNVRIKT IDPSLVAGFT+R+GNSGSKLID+SVKKQLEEIA+QLDLG+IQL
Sbjct: 181 KQVQKLTGAKNVRIKTAIDPSLVAGFTIRYGNSGSKLIDMSVKKQLEEIAAQLDLGDIQL 240

[Close]
BLAST of CmoCh09G012380 vs. NCBI nr
Match: gi|823130593|ref|XP_012453807.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii])

HSP 1 Score: 300.8 bits (769), Expect = 2.1e-78
Identity = 173/242 (71.49%), Postives = 201/242 (83.06%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTTPA-NLSFSATFLSGRLRLGQHRS-HGGARMSASAA 60
           MA+L Q + SLQ KLL + +  R+ P+ NLSFSATF S  L+L   R  HGGA+MSASAA
Sbjct: 1   MASLQQASISLQPKLLSSSQHPRSLPSLNLSFSATFPS--LKLSTTRPLHGGAKMSASAA 60

Query: 61  GSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAAS 120
            SYA ALA+VA SNNTLDATS DVEK+E +F+D QV   F NPTI + KK  ++DEI +S
Sbjct: 61  SSYATALADVAKSNNTLDATSSDVEKVEKIFSDPQVLQFFTNPTIDVLKKRQVLDEIVSS 120

Query: 121 SSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIA 180
           S L PHTANFL ILVDAKRID++KEIV EFE VYN++T+TELAVVSSVV LE QHLAQIA
Sbjct: 121 SELQPHTANFLNILVDAKRIDLIKEIVKEFELVYNELTDTELAVVSSVVKLESQHLAQIA 180

Query: 181 KQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQL 240
           KQVQKL+GAKNVRIKT IDPSLVAGFT+R+G+SGSKLID+SVKKQLEEIA+QLDLG+IQL
Sbjct: 181 KQVQKLTGAKNVRIKTMIDPSLVAGFTIRYGSSGSKLIDMSVKKQLEEIAAQLDLGDIQL 240

[Close]
BLAST of CmoCh09G012380 vs. NCBI nr
Match: gi|802761111|ref|XP_012089674.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas])

HSP 1 Score: 297.4 bits (760), Expect = 2.3e-77
Identity = 173/247 (70.04%), Postives = 202/247 (81.78%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTIRISRTT----PANLSFSATFLSGRLR-LGQHRSHGG----A 60
           MAAL  T  SLQ+K+ P+ R+S+T     P +LSFS+TF S  L     HR+ GG    A
Sbjct: 1   MAALQNTPISLQSKIPPSARLSKTLSSQKPLSLSFSSTFPSFNLSSTTAHRARGGGATGA 60

Query: 61  RMSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLAL 120
           +MSA+AA SYAAALA+VA SNNTLD+T+ D+EKIE +F+D QV D F+NPTIS+EKK  +
Sbjct: 61  KMSATAAASYAAALADVAKSNNTLDSTAADIEKIEKLFSDPQVVDFFSNPTISVEKKREV 120

Query: 121 VDEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQ 180
           VDEIA S +L PHTANFL IL+DAKRID+ KEIV EFE VYNKIT+TELA V+SVV LE 
Sbjct: 121 VDEIAKSLALQPHTANFLNILIDAKRIDLAKEIVKEFELVYNKITDTELATVTSVVKLES 180

Query: 181 QHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQL 239
           QHLAQIAKQVQKL+GAKNVRIKT IDPSLVAGFTVRFG+SGSKLIDLSVKKQLEEIA+QL
Sbjct: 181 QHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTVRFGSSGSKLIDLSVKKQLEEIAAQL 240

The following BLAST results are available for this feature:
BLAST of CmoCh09G012380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPD_ARATH1.8e-6661.25ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana GN=ATPD PE=1 S... [more]
ATPD_TOBAC9.1e-6659.27ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1[more]
ATPD_PEA6.5e-6457.94ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1[more]
ATPD_SPIOL1.1e-5855.02ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2[more]
ATPD_SORBI5.4e-5053.20ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1[more]
BLAST of CmoCh09G012380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7Z3_CUCSA5.3e-10590.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016970 PE=3 SV=1[more]
A0A061F8S8_THECC2.0e-8071.90ATP synthase delta-subunit protein OS=Theobroma cacao GN=TCM_032365 PE=3 SV=1[more]
A0A0D2NHU9_GOSRA1.5e-7871.49Uncharacterized protein OS=Gossypium raimondii GN=B456_002G037600 PE=3 SV=1[more]
A0A067JS97_JATCU1.6e-7770.04Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01954 PE=3 SV=1[more]
A0A059BZG6_EUCGR1.8e-7668.29Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04149 PE=3 SV=1[more]
BLAST of CmoCh09G012380 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G09650.11.0e-6761.25 ATP synthase delta-subunit gene[more]
BLAST of CmoCh09G012380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126215|ref|XP_008463069.1|5.3e-10691.25PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo][more]
gi|449441205|ref|XP_004138373.1|7.6e-10590.42PREDICTED: ATP synthase subunit delta, chloroplastic [Cucumis sativus][more]
gi|590611778|ref|XP_007022200.1|2.9e-8071.90ATP synthase delta-subunit gene [Theobroma cacao][more]
gi|823130593|ref|XP_012453807.1|2.1e-7871.49PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii][more]
gi|802761111|ref|XP_012089674.1|2.3e-7770.04PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000711ATPase_OSCP/dsu
IPR020781ATPase_OSCP/d_CS
IPR026015ATP_synth_OSCP/delta_N_sf
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0071310 cellular response to organic substance
biological_process GO:0042742 defense response to bacterium
biological_process GO:0044802 single-organism membrane organization
biological_process GO:0007165 signal transduction
biological_process GO:0031347 regulation of defense response
biological_process GO:0032787 monocarboxylic acid metabolic process
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0051186 cofactor metabolic process
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0009735 response to cytokinin
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0009409 response to cold
cellular_component GO:0010319 stromule
cellular_component GO:0045259 proton-transporting ATP synthase complex
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016020 membrane
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G012380.1CmoCh09G012380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000711ATPase, OSCP/delta subunitPRINTSPR00125ATPASEDELTAcoord: 137..151
score: 1.1E-23coord: 206..224
score: 1.1E-23coord: 188..203
score: 1.1E-23coord: 57..76
score: 1.1E-23coord: 126..137
score: 1.1
IPR000711ATPase, OSCP/delta subunitHAMAPMF_01416ATP_synth_delta_bactcoord: 53..233
score: 17
IPR000711ATPase, OSCP/delta subunitPANTHERPTHR11910ATP SYNTHASE DELTA CHAINcoord: 56..235
score: 7.6
IPR000711ATPase, OSCP/delta subunitPFAMPF00213OSCPcoord: 58..231
score: 1.6
IPR000711ATPase, OSCP/delta subunitTIGRFAMsTIGR01145TIGR01145coord: 58..231
score: 1.4
IPR020781ATPase, OSCP/delta subunit, conserved sitePROSITEPS00389ATPASE_DELTAcoord: 190..209
scor
IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domainGENE3DG3DSA:1.10.520.20coord: 58..154
score: 2.8
IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domainunknownSSF47928N-terminal domain of the delta subunit of the F1F0-ATP synthasecoord: 55..157
score: 2.62
NoneNo IPR availablePANTHERPTHR11910:SF7F-TYPE H+-TRANSPORTING ATPASE SUBUNIT DELTAcoord: 56..235
score: 7.6