ClCG08G002530 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G002530
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionATP synthase delta-subunit gene LENGTH=234
LocationCG_Chr08 : 5345009 .. 5345731 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTTCCTCGAATAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCTTGTTCGCGGATCCGCAGGTGCTCAATTTCTTCGCGAACCCAACGATTAGCATCGAGAAGAAACTGGCAGTGGTGGATGAAATCGCTTCGTCCTCATCTCTACAGCCGCATTCGGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTATACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA

mRNA sequence

ATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTTCCTCGAATAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCTTGTTCGCGGATCCGCAGGTGCTCAATTTCTTCGCGAACCCAACGATTAGCATCGAGAAGAAACTGGCAGTGGTGGATGAAATCGCTTCGTCCTCATCTCTACAGCCGCATTCGGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTATACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA

Coding sequence (CDS)

ATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTTCCTCGAATAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCTTGTTCGCGGATCCGCAGGTGCTCAATTTCTTCGCGAACCCAACGATTAGCATCGAGAAGAAACTGGCAGTGGTGGATGAAATCGCTTCGTCCTCATCTCTACAGCCGCATTCGGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTATACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA

Protein sequence

MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Homology
[Close]
BLAST of ClCG08G002530 vs. Swiss-Prot
Match: ATPD_ARATH (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana GN=ATPD PE=1 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.8e-75
Identity = 152/240 (63.33%), Postives = 191/240 (79.58%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPT-VRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAG 60
           MA+L QT  SLQ+KL P+  + +R+ P+      TFP   +R+++  +  GA+MSATAA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLPLR----KTFP---IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSS 120
           SYA ALA+VA  N+T+E T  D+EK+E +F+DPQVLNFFANPTI++EKK  V+D+I  SS
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAK 180
           SLQ H++NFL +LVDA RI+I+ EIV EFELVYNK+T+T+LA V SVV+LE   LAQIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLA 240
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IA+QL+LG IQLA
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

[Close]
BLAST of ClCG08G002530 vs. Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-71
Identity = 148/248 (59.68%), Postives = 183/248 (73.79%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSA--TFPSRGLRLSHHRSH------GGAK 60
           MAAL QT  + Q++  P  +        LSFS     P   ++L  +R+        G+K
Sbjct: 1   MAALQQTPITFQSRSPPPTQIISGPTAKLSFSGGLKLPKLTIKLRSNRTSRRGGGAAGSK 60

Query: 61  MSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVV 120
           M A+AAGSYA ALA++A SN TLE T+ D+EKIE +  D  V NFF +P +  EKK  +V
Sbjct: 61  MVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELV 120

Query: 121 DEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQ 180
           DEI SSSS+QPH ANFL ILVD KR++++KEIV EFE VYN +T+TELAVV+SVV+LE Q
Sbjct: 121 DEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQ 180

Query: 181 HLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLD 240
           HLAQIAK VQ+L+G+KNVRIKT ID SLVAGFT+R+GNSGSKLID+SVKKQLE+IAAQL+
Sbjct: 181 HLAQIAKGVQRLTGSKNVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVKKQLEDIAAQLE 240

[Close]
BLAST of ClCG08G002530 vs. Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.7e-69
Identity = 144/252 (57.14%), Postives = 189/252 (75.00%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLP--TVRFSRTTPVNLSFSATFPSRGLRLS-------HHRSHGGA 60
           MA+L  T ASL +K +P  T   +R   +NLS S+TF S  L+L          RS GGA
Sbjct: 1   MASLQHTTASLHSKHIPKTTNILTRKPILNLS-SSTFYSPKLKLKLKLPLTKTRRSTGGA 60

Query: 61  ---KMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKK 120
              +MS+ AAGSYAAALA++A+SNNTL+A + D +KIE LF+DP+V ++F++P +    K
Sbjct: 61  LGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTK 120

Query: 121 LAVVDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQ 180
             ++ E A++S  QPH+ NFL +L+D+KRID++ +I+ EFE VYN +T+TEL VV+SVV+
Sbjct: 121 RQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVK 180

Query: 181 LEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA 240
           LE  HLAQIAKQVQKL+GAK VR KT +DPSLVAGFTVR+GN+GSK ID+SVK++LEEIA
Sbjct: 181 LESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIA 240

[Close]
BLAST of ClCG08G002530 vs. Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-63
Identity = 137/249 (55.02%), Postives = 179/249 (71.89%), Query Frame = 1 

Query: 3   ALHQTAASLQAKLLPTVRFSRTTPVNLSFS---ATFPSRGLRLSHH-----RSHGGA--- 62
           AL     +  A L  +   S   P +LSFS   ATF    L++        +  GGA   
Sbjct: 9   ALQSRTTTAVAALSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGT 68

Query: 63  KMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAV 122
           +M  + A  YA+ALA+VA    TLEAT+ DVEK+  +F++  V  FFANP ISI+ K +V
Sbjct: 69  RMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSV 128

Query: 123 VDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQ 182
           +DEI ++S LQPH+ANF+ IL+D++RI+++KEI+ EFE V+NKIT TE+AVV+SVV+LE 
Sbjct: 129 LDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLEN 188

Query: 183 QHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQL 241
            HLAQIAK VQK++GAKNVRIKT IDPSLVAGFT+R+GN GSKL+D+SVKKQLEEIAAQL
Sbjct: 189 DHLAQIAKGVQKITGAKNVRIKTVIDPSLVAGFTIRYGNEGSKLVDMSVKKQLEEIAAQL 248

[Close]
BLAST of ClCG08G002530 vs. Swiss-Prot
Match: ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.5e-55
Identity = 122/247 (49.39%), Postives = 161/247 (65.18%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFP--SRGL---RLSHHRSHGGA--KM 60
           MAAL   + +L+         S         SA+F   +RGL   RL+  R  G      
Sbjct: 1   MAALRLASFTLRPAAAAAASASSGATPAAPRSASFARAARGLPSLRLAPPRRRGDLVRPR 60

Query: 61  SATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVD 120
           +  AA SYA+AL+EVA  N TLE T  D+EK++ +FAD  V  FF NPT+  E+K A++D
Sbjct: 61  AEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALID 120

Query: 121 EIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQH 180
           EIA S  LQPH  NF+ ++VD  R  IL EIV EFE ++N +T TE+A V+SVVQLE Q 
Sbjct: 121 EIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQD 180

Query: 181 LAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDL 240
           LAQIA+ VQK++GAKNVR+KTQ+DP L+AGFTV++G  GS LID+SV+KQ+EEI ++ +L
Sbjct: 181 LAQIAQHVQKMTGAKNVRLKTQLDPELIAGFTVQYGRDGSSLIDMSVRKQIEEITSEFEL 240

[Close]
BLAST of ClCG08G002530 vs. TrEMBL
Match: A0A0A0K7Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016970 PE=3 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 1.6e-114
Identity = 223/240 (92.92%), Postives = 231/240 (96.25%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGS 60
           MAALHQT ASLQAKLLPT R SRTTPVNLSFSATFPSRGLRL  HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSSS 120
           YAAALAEVA+SNNTL+ATS DVEKIES+FAD +V +FFANPTIS+EKK AVVDE+ASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]
BLAST of ClCG08G002530 vs. TrEMBL
Match: A0A0D2NHU9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G037600 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 9.1e-89
Identity = 181/242 (74.79%), Postives = 209/242 (86.36%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTP-VNLSFSATFPSRGLRLSHHRS-HGGAKMSATAA 60
           MA+L Q + SLQ KLL + +  R+ P +NLSFSATFPS  L+LS  R  HGGAKMSA+AA
Sbjct: 1   MASLQQASISLQPKLLSSSQHPRSLPSLNLSFSATFPS--LKLSTTRPLHGGAKMSASAA 60

Query: 61  GSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASS 120
            SYA ALA+VA SNNTL+ATS DVEK+E +F+DPQVL FF NPTI + KK  V+DEI SS
Sbjct: 61  SSYATALADVAKSNNTLDATSSDVEKVEKIFSDPQVLQFFTNPTIDVLKKRQVLDEIVSS 120

Query: 121 SSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIA 180
           S LQPH+ANFL ILVDAKRID++KEIV EFELVYN++T+TELAVVSSVV+LE QHLAQIA
Sbjct: 121 SELQPHTANFLNILVDAKRIDLIKEIVKEFELVYNELTDTELAVVSSVVKLESQHLAQIA 180

Query: 181 KQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQL 240
           KQVQKL+GAKNVRIKT IDPSLVAGFT+R+G+SGSKLID+SVKKQLEEIAAQLDLG+IQL
Sbjct: 181 KQVQKLTGAKNVRIKTMIDPSLVAGFTIRYGSSGSKLIDMSVKKQLEEIAAQLDLGDIQL 240

[Close]
BLAST of ClCG08G002530 vs. TrEMBL
Match: A0A067JS97_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01954 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 7.7e-88
Identity = 180/247 (72.87%), Postives = 210/247 (85.02%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTT----PVNLSFSATFPSRGLR-LSHHRSHGG----A 60
           MAAL  T  SLQ+K+ P+ R S+T     P++LSFS+TFPS  L   + HR+ GG    A
Sbjct: 1   MAALQNTPISLQSKIPPSARLSKTLSSQKPLSLSFSSTFPSFNLSSTTAHRARGGGATGA 60

Query: 61  KMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAV 120
           KMSATAA SYAAALA+VA SNNTL++T+ D+EKIE LF+DPQV++FF+NPTIS+EKK  V
Sbjct: 61  KMSATAAASYAAALADVAKSNNTLDSTAADIEKIEKLFSDPQVVDFFSNPTISVEKKREV 120

Query: 121 VDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQ 180
           VDEIA S +LQPH+ANFL IL+DAKRID+ KEIV EFELVYNKIT+TELA V+SVV+LE 
Sbjct: 121 VDEIAKSLALQPHTANFLNILIDAKRIDLAKEIVKEFELVYNKITDTELATVTSVVKLES 180

Query: 181 QHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQL 239
           QHLAQIAKQVQKL+GAKNVRIKT IDPSLVAGFTVRFG+SGSKLIDLSVKKQLEEIAAQL
Sbjct: 181 QHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTVRFGSSGSKLIDLSVKKQLEEIAAQL 240

[Close]
BLAST of ClCG08G002530 vs. TrEMBL
Match: A0A061F8S8_THECC (ATP synthase delta-subunit protein OS=Theobroma cacao GN=TCM_032365 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.2e-87
Identity = 178/242 (73.55%), Postives = 207/242 (85.54%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTP-VNLSFSATFPSRGLRLSHHRS-HGGAKMSATAA 60
           MA+  QT+ SLQ+KLLP+ +  R  P +NLSFSATFPS  L+LS  R   GGAKMSATAA
Sbjct: 1   MASFQQTSISLQSKLLPSSQLPRALPSLNLSFSATFPS--LKLSTTRPLQGGAKMSATAA 60

Query: 61  GSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASS 120
            SYA ALA+VA SNNTL++TS D+E++E +F+DPQV++FFANPTI   KK  V+D+I  S
Sbjct: 61  SSYALALADVAKSNNTLDSTSSDIEQVEKIFSDPQVIDFFANPTIDAIKKRQVLDDIVKS 120

Query: 121 SSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIA 180
           S LQPH+ANFL ILVDAKRIDI+KEIV EFE V+NK+T+TELAVVSSVV LE QHLAQIA
Sbjct: 121 SGLQPHTANFLNILVDAKRIDIIKEIVKEFESVFNKLTDTELAVVSSVVPLESQHLAQIA 180

Query: 181 KQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQL 240
           KQVQKL+GAKNVRIKT IDPSLVAGFT+R+GNSGSKLID+SVKKQLEEIAAQLDLG+IQL
Sbjct: 181 KQVQKLTGAKNVRIKTAIDPSLVAGFTIRYGNSGSKLIDMSVKKQLEEIAAQLDLGDIQL 240

[Close]
BLAST of ClCG08G002530 vs. TrEMBL
Match: W9R5E3_9ROSA (ATP synthase delta chain OS=Morus notabilis GN=L484_016411 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.8e-82
Identity = 174/246 (70.73%), Postives = 196/246 (79.67%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSAT-----FPSRGLRLSHHRSHG--GAKM 60
           MAAL QT  S ++KL P    S TTP  LSFS++      PS   RLS+ RS    GA+M
Sbjct: 1   MAALQQTPISFRSKLPPPTSASLTTPRTLSFSSSADTTKLPSLSRRLSYRRSGSATGARM 60

Query: 61  SATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVD 120
            +TAA SYA ALA VA SNNTLEATS DVEK+E +F++P V+ FF NPTI  EKK  VVD
Sbjct: 61  VSTAAASYAVALAGVAKSNNTLEATSADVEKVEKIFSEPAVIGFFTNPTIDEEKKRKVVD 120

Query: 121 EIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQH 180
           E+ASSSSLQPH+ANFL IL+DAKRIDI+K+IV EFE VYN  T TELAVVSSVV LE QH
Sbjct: 121 ELASSSSLQPHTANFLNILIDAKRIDIIKDIVKEFETVYNTETETELAVVSSVVPLESQH 180

Query: 181 LAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDL 240
           LAQIAKQVQKL+GAKNVRIKT IDPSLVAGFTVRFG++GSKLIDLSVKKQLEEIAAQLDL
Sbjct: 181 LAQIAKQVQKLTGAKNVRIKTLIDPSLVAGFTVRFGSTGSKLIDLSVKKQLEEIAAQLDL 240

[Close]
BLAST of ClCG08G002530 vs. TAIR10
Match: AT4G09650.1 (AT4G09650.1 ATP synthase delta-subunit gene)

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-76
Identity = 152/240 (63.33%), Postives = 191/240 (79.58%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPT-VRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAG 60
           MA+L QT  SLQ+KL P+  + +R+ P+      TFP   +R+++  +  GA+MSATAA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLPLR----KTFP---IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSS 120
           SYA ALA+VA  N+T+E T  D+EK+E +F+DPQVLNFFANPTI++EKK  V+D+I  SS
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAK 180
           SLQ H++NFL +LVDA RI+I+ EIV EFELVYNK+T+T+LA V SVV+LE   LAQIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLA 240
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IA+QL+LG IQLA
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

[Close]
BLAST of ClCG08G002530 vs. NCBI nr
Match: gi|659126215|ref|XP_008463069.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 6.7e-117
Identity = 227/240 (94.58%), Postives = 234/240 (97.50%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGS 60
           MAALHQTAASLQAKLLPT R SRTTPVNLSFSATFPSRGLRL  HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSSS 120
           YAAALAEVA+SNNTL+ATS DVEKIES+FADPQVL+FF+NPTIS+EKK AVVDEIASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]
BLAST of ClCG08G002530 vs. NCBI nr
Match: gi|449441205|ref|XP_004138373.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Cucumis sativus])

HSP 1 Score: 420.2 bits (1079), Expect = 2.4e-114
Identity = 223/240 (92.92%), Postives = 231/240 (96.25%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGS 60
           MAALHQT ASLQAKLLPT R SRTTPVNLSFSATFPSRGLRL  HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSSS 120
           YAAALAEVA+SNNTL+ATS DVEKIES+FAD +V +FFANPTIS+EKK AVVDE+ASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]
BLAST of ClCG08G002530 vs. NCBI nr
Match: gi|823130593|ref|XP_012453807.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii])

HSP 1 Score: 334.7 bits (857), Expect = 1.3e-88
Identity = 181/242 (74.79%), Postives = 209/242 (86.36%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTP-VNLSFSATFPSRGLRLSHHRS-HGGAKMSATAA 60
           MA+L Q + SLQ KLL + +  R+ P +NLSFSATFPS  L+LS  R  HGGAKMSA+AA
Sbjct: 1   MASLQQASISLQPKLLSSSQHPRSLPSLNLSFSATFPS--LKLSTTRPLHGGAKMSASAA 60

Query: 61  GSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASS 120
            SYA ALA+VA SNNTL+ATS DVEK+E +F+DPQVL FF NPTI + KK  V+DEI SS
Sbjct: 61  SSYATALADVAKSNNTLDATSSDVEKVEKIFSDPQVLQFFTNPTIDVLKKRQVLDEIVSS 120

Query: 121 SSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIA 180
           S LQPH+ANFL ILVDAKRID++KEIV EFELVYN++T+TELAVVSSVV+LE QHLAQIA
Sbjct: 121 SELQPHTANFLNILVDAKRIDLIKEIVKEFELVYNELTDTELAVVSSVVKLESQHLAQIA 180

Query: 181 KQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQL 240
           KQVQKL+GAKNVRIKT IDPSLVAGFT+R+G+SGSKLID+SVKKQLEEIAAQLDLG+IQL
Sbjct: 181 KQVQKLTGAKNVRIKTMIDPSLVAGFTIRYGSSGSKLIDMSVKKQLEEIAAQLDLGDIQL 240

[Close]
BLAST of ClCG08G002530 vs. NCBI nr
Match: gi|802761111|ref|XP_012089674.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas])

HSP 1 Score: 331.6 bits (849), Expect = 1.1e-87
Identity = 180/247 (72.87%), Postives = 210/247 (85.02%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTT----PVNLSFSATFPSRGLR-LSHHRSHGG----A 60
           MAAL  T  SLQ+K+ P+ R S+T     P++LSFS+TFPS  L   + HR+ GG    A
Sbjct: 1   MAALQNTPISLQSKIPPSARLSKTLSSQKPLSLSFSSTFPSFNLSSTTAHRARGGGATGA 60

Query: 61  KMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAV 120
           KMSATAA SYAAALA+VA SNNTL++T+ D+EKIE LF+DPQV++FF+NPTIS+EKK  V
Sbjct: 61  KMSATAAASYAAALADVAKSNNTLDSTAADIEKIEKLFSDPQVVDFFSNPTISVEKKREV 120

Query: 121 VDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQ 180
           VDEIA S +LQPH+ANFL IL+DAKRID+ KEIV EFELVYNKIT+TELA V+SVV+LE 
Sbjct: 121 VDEIAKSLALQPHTANFLNILIDAKRIDLAKEIVKEFELVYNKITDTELATVTSVVKLES 180

Query: 181 QHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQL 239
           QHLAQIAKQVQKL+GAKNVRIKT IDPSLVAGFTVRFG+SGSKLIDLSVKKQLEEIAAQL
Sbjct: 181 QHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTVRFGSSGSKLIDLSVKKQLEEIAAQL 240

[Close]
BLAST of ClCG08G002530 vs. NCBI nr
Match: gi|590611778|ref|XP_007022200.1| (ATP synthase delta-subunit gene [Theobroma cacao])

HSP 1 Score: 330.1 bits (845), Expect = 3.2e-87
Identity = 178/242 (73.55%), Postives = 207/242 (85.54%), Query Frame = 1 

Query: 1   MAALHQTAASLQAKLLPTVRFSRTTP-VNLSFSATFPSRGLRLSHHRS-HGGAKMSATAA 60
           MA+  QT+ SLQ+KLLP+ +  R  P +NLSFSATFPS  L+LS  R   GGAKMSATAA
Sbjct: 1   MASFQQTSISLQSKLLPSSQLPRALPSLNLSFSATFPS--LKLSTTRPLQGGAKMSATAA 60

Query: 61  GSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASS 120
            SYA ALA+VA SNNTL++TS D+E++E +F+DPQV++FFANPTI   KK  V+D+I  S
Sbjct: 61  SSYALALADVAKSNNTLDSTSSDIEQVEKIFSDPQVIDFFANPTIDAIKKRQVLDDIVKS 120

Query: 121 SSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIA 180
           S LQPH+ANFL ILVDAKRIDI+KEIV EFE V+NK+T+TELAVVSSVV LE QHLAQIA
Sbjct: 121 SGLQPHTANFLNILVDAKRIDIIKEIVKEFESVFNKLTDTELAVVSSVVPLESQHLAQIA 180

Query: 181 KQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQL 240
           KQVQKL+GAKNVRIKT IDPSLVAGFT+R+GNSGSKLID+SVKKQLEEIAAQLDLG+IQL
Sbjct: 181 KQVQKLTGAKNVRIKTAIDPSLVAGFTIRYGNSGSKLIDMSVKKQLEEIAAQLDLGDIQL 240

The following BLAST results are available for this feature:
BLAST of ClCG08G002530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPD_ARATH4.8e-7563.33ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana GN=ATPD PE=1 S... [more]
ATPD_TOBAC1.1e-7159.68ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1[more]
ATPD_PEA6.7e-6957.14ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1[more]
ATPD_SPIOL1.5e-6355.02ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2[more]
ATPD_SORBI5.5e-5549.39ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1[more]
BLAST of ClCG08G002530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7Z3_CUCSA1.6e-11492.92Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016970 PE=3 SV=1[more]
A0A0D2NHU9_GOSRA9.1e-8974.79Uncharacterized protein OS=Gossypium raimondii GN=B456_002G037600 PE=3 SV=1[more]
A0A067JS97_JATCU7.7e-8872.87Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01954 PE=3 SV=1[more]
A0A061F8S8_THECC2.2e-8773.55ATP synthase delta-subunit protein OS=Theobroma cacao GN=TCM_032365 PE=3 SV=1[more]
W9R5E3_9ROSA4.8e-8270.73ATP synthase delta chain OS=Morus notabilis GN=L484_016411 PE=3 SV=1[more]
BLAST of ClCG08G002530 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G09650.12.7e-7663.33 ATP synthase delta-subunit gene[more]
BLAST of ClCG08G002530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126215|ref|XP_008463069.1|6.7e-11794.58PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo][more]
gi|449441205|ref|XP_004138373.1|2.4e-11492.92PREDICTED: ATP synthase subunit delta, chloroplastic [Cucumis sativus][more]
gi|823130593|ref|XP_012453807.1|1.3e-8874.79PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii][more]
gi|802761111|ref|XP_012089674.1|1.1e-8772.87PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas][more]
gi|590611778|ref|XP_007022200.1|3.2e-8773.55ATP synthase delta-subunit gene [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000711ATPase_OSCP/dsu
IPR020781ATPase_OSCP/d_CS
IPR026015ATP_synth_OSCP/delta_N_sf
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0044802 single-organism membrane organization
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0009735 response to cytokinin
biological_process GO:0031347 regulation of defense response
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0007165 signal transduction
biological_process GO:0032787 monocarboxylic acid metabolic process
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0009409 response to cold
biological_process GO:0071310 cellular response to organic substance
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0009814 defense response, incompatible interaction
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0010319 stromule
cellular_component GO:0016020 membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009526 plastid envelope
cellular_component GO:0045259 proton-transporting ATP synthase complex
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G002530.1ClCG08G002530.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000711ATPase, OSCP/delta subunitPRINTSPR00125ATPASEDELTAcoord: 206..224
score: 1.6E-23coord: 188..203
score: 1.6E-23coord: 137..151
score: 1.6E-23coord: 57..76
score: 1.6E-23coord: 126..137
score: 1.6
IPR000711ATPase, OSCP/delta subunitHAMAPMF_01416ATP_synth_delta_bactcoord: 53..233
score: 1
IPR000711ATPase, OSCP/delta subunitPANTHERPTHR11910ATP SYNTHASE DELTA CHAINcoord: 31..235
score: 2.6E
IPR000711ATPase, OSCP/delta subunitPFAMPF00213OSCPcoord: 58..231
score: 4.1
IPR000711ATPase, OSCP/delta subunitTIGRFAMsTIGR01145TIGR01145coord: 58..231
score: 7.0
IPR020781ATPase, OSCP/delta subunit, conserved sitePROSITEPS00389ATPASE_DELTAcoord: 190..209
scor
IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domainGENE3DG3DSA:1.10.520.20coord: 55..154
score: 3.5
IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domainunknownSSF47928N-terminal domain of the delta subunit of the F1F0-ATP synthasecoord: 54..157
score: 1.83
NoneNo IPR availablePANTHERPTHR11910:SF7F-TYPE H+-TRANSPORTING ATPASE SUBUNIT DELTAcoord: 31..235
score: 2.6E