CmoCh09G009950 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G009950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Expressed protein) (OSJNBa0073L01.8)
Location	Cmo_Chr09 : 5285655 .. 5286023 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAATGAAAACTGTAATGCCAGGGCAATGAACTCCTCCATTGCCTTGCTGCAGGAGAGATTTAGACGATTGCAGAAAGCTAAAGAGTTGAGACAGCAGAAAGAGTTTCGAAGGCTGTCGTCTGAGTCGATACAGGCCAATTCAGCAGTGTGTTCCGAGCAAACTGGGTTATTTTTCCATTCTGAACTAGTTCTTCCACCTACCTCATCACTACAAGGCTCTTCATACCTTCACCCAATCATGGAAACCAGAAAATCTCATCTTCAAGTCACAGATAACTTATCAGACATGGGGTCGAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGATACCTCTCTTCATCTGTGA

mRNA sequence

ATGAGTAATGAAAACTGTAATGCCAGGGCAATGAACTCCTCCATTGCCTTGCTGCAGGAGAGATTTAGACGATTGCAGAAAGCTAAAGAGTTGAGACAGCAGAAAGAGTTTCGAAGGCTGTCGTCTGAGTCGATACAGGCCAATTCAGCAGTGTGTTCCGAGCAAACTGGGTTATTTTTCCATTCTGAACTAGTTCTTCCACCTACCTCATCACTACAAGGCTCTTCATACCTTCACCCAATCATGGAAACCAGAAAATCTCATCTTCAAGTCACAGATAACTTATCAGACATGGGGTCGAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGATACCTCTCTTCATCTGTGA

Coding sequence (CDS)

ATGAGTAATGAAAACTGTAATGCCAGGGCAATGAACTCCTCCATTGCCTTGCTGCAGGAGAGATTTAGACGATTGCAGAAAGCTAAAGAGTTGAGACAGCAGAAAGAGTTTCGAAGGCTGTCGTCTGAGTCGATACAGGCCAATTCAGCAGTGTGTTCCGAGCAAACTGGGTTATTTTTCCATTCTGAACTAGTTCTTCCACCTACCTCATCACTACAAGGCTCTTCATACCTTCACCCAATCATGGAAACCAGAAAATCTCATCTTCAAGTCACAGATAACTTATCAGACATGGGGTCGAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGATACCTCTCTTCATCTGTGA

Homology

[Close]

BLAST of CmoCh09G009950 vs. TrEMBL
Match: A0A0A0LBC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769680 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-50
Identity = 108/124 (87.10%), Postives = 118/124 (95.16%), Query Frame = 1


Query: 1   MSNENCNARAMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFF 60
           MS+ENCNARAMNSSIALLQERFR+LQKAKELR+QKEFRR+SSESIQAN+AVCSEQTGL+F
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60

Query: 61  HSELVLPPTSSLQGSSYLHPIMETRKSHLQVTDN--LSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLPP S LQGSSYL P++E+RKSHLQVTDN  LSD+GSRE VMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 123
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CmoCh09G009950 vs. TrEMBL
Match: B9T468_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0423940 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 1


Query: 1   MSNENCNARAMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFF 60
           M  +NC+  +++SSIALLQERFR+L++AKE+RQQ+E  RL SE+ Q       EQ+  FF
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKAFEQSRPFF 60

Query: 61  HSELVLPPTSSLQGSSYLHPIMETRKSHLQV--TDNLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLP    LQ S YL P M+ R + LQ+  T N  D+ S+ TVMH TN  D+S++DT
Sbjct: 61  HSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVDT 120

Query: 121 SLHL 123
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CmoCh09G009950 vs. TrEMBL
Match: A0A067L442_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01002 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.7e-22
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 1


Query: 1   MSNENCNARAMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFF 60
           M  +NC+   ++SSIALLQERFR+L+KAKE+RQQ+E  RL SE+ Q  SA   E +  FF
Sbjct: 1   MGRQNCDPTVIHSSIALLQERFRQLEKAKEMRQQRELLRLFSEAEQVQSAKDYEPSRPFF 60

Query: 61  HSELVLPPTSSLQGSSYLHPIMETRKSHLQV--TDNLSDMGSRETVMHRTNCVDDSNIDT 120
           HSEL L P   LQGS Y+ P ME + + L V  T NL ++ S+ TVMH  N  D+S++DT
Sbjct: 61  HSELTLSPGQPLQGSLYVQPNMENKYTDLPVNETPNLVNLWSKNTVMHNINNFDESDVDT 120

Query: 121 SLHL 123
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CmoCh09G009950 vs. TrEMBL
Match: A0A0D2W6E9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G155000 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 10  AMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFFHSELVLPPT 69
           A++SSIALLQERFRRLQ+AKELRQ++E  RL SE+ + N    +  + LFFHSEL+L P 
Sbjct: 8   AVHSSIALLQERFRRLQRAKELRQEREVLRLLSEAERINQGTPNVASQLFFHSELILQPR 67

Query: 70  SSLQGSSYLHPIMETRKSHLQVTDNLSDMGSRETVMHRTNCVDDSNIDTSLHL 123
             LQGS +    M+ R+  L+ T  LS++  R+ V+H T+  +DS++DTSLHL
Sbjct: 68  PPLQGSVHRESSMQIRRQVLE-TPILSNLQQRDMVLH-TSTFNDSDVDTSLHL 118

[Close]

BLAST of CmoCh09G009950 vs. TrEMBL
Match: U5GSJ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s37300g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-15
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 1   MSNENCNARAMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFF 60
           M  ++C+   ++SSIALLQERFR+L++AKE+RQQ+E  +L SE+    SA+  E + L  
Sbjct: 1   MGRQSCDPAIIHSSIALLQERFRQLERAKEMRQQRELLKLFSEADHVQSAMAYESSKL-L 60

Query: 61  HSELVLPPTSSLQGSSYLHPIMETRKSHLQV--TDNLSDMGSRETVMHRTNCVDDSNIDT 120
           HSEL LPP   +Q S    P M+T  + L V  T  ++++ S ++VM+ T   D+S++DT
Sbjct: 61  HSELTLPPRQPIQASLSFQPTMQTEHNDLLVNTTPVVANLCSTDSVMNLTYNFDESDVDT 120

Query: 121 SLHL 123
           SLHL
Sbjct: 121 SLHL 123

[Close]

BLAST of CmoCh09G009950 vs. NCBI nr
Match: gi|700203970|gb|KGN59103.1| (hypothetical protein Csa_3G769680 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-50
Identity = 108/124 (87.10%), Postives = 118/124 (95.16%), Query Frame = 1


Query: 1   MSNENCNARAMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFF 60
           MS+ENCNARAMNSSIALLQERFR+LQKAKELR+QKEFRR+SSESIQAN+AVCSEQTGL+F
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60

Query: 61  HSELVLPPTSSLQGSSYLHPIMETRKSHLQVTDN--LSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLPP S LQGSSYL P++E+RKSHLQVTDN  LSD+GSRE VMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 123
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CmoCh09G009950 vs. NCBI nr
Match: gi|223527175|gb|EEF29345.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 1


Query: 1   MSNENCNARAMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFF 60
           M  +NC+  +++SSIALLQERFR+L++AKE+RQQ+E  RL SE+ Q       EQ+  FF
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKAFEQSRPFF 60

Query: 61  HSELVLPPTSSLQGSSYLHPIMETRKSHLQV--TDNLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLP    LQ S YL P M+ R + LQ+  T N  D+ S+ TVMH TN  D+S++DT
Sbjct: 61  HSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVDT 120

Query: 121 SLHL 123
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CmoCh09G009950 vs. NCBI nr
Match: gi|643732053|gb|KDP39245.1| (hypothetical protein JCGZ_01002 [Jatropha curcas])

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-22
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 1


Query: 1   MSNENCNARAMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFF 60
           M  +NC+   ++SSIALLQERFR+L+KAKE+RQQ+E  RL SE+ Q  SA   E +  FF
Sbjct: 1   MGRQNCDPTVIHSSIALLQERFRQLEKAKEMRQQRELLRLFSEAEQVQSAKDYEPSRPFF 60

Query: 61  HSELVLPPTSSLQGSSYLHPIMETRKSHLQV--TDNLSDMGSRETVMHRTNCVDDSNIDT 120
           HSEL L P   LQGS Y+ P ME + + L V  T NL ++ S+ TVMH  N  D+S++DT
Sbjct: 61  HSELTLSPGQPLQGSLYVQPNMENKYTDLPVNETPNLVNLWSKNTVMHNINNFDESDVDT 120

Query: 121 SLHL 123
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CmoCh09G009950 vs. NCBI nr
Match: gi|823265182|ref|XP_012465331.1| (PREDICTED: uncharacterized protein LOC105784090 [Gossypium raimondii])

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 10  AMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFFHSELVLPPT 69
           A++SSIALLQERFRRLQ+AKELRQ++E  RL SE+ + N    +  + LFFHSEL+L P 
Sbjct: 8   AVHSSIALLQERFRRLQRAKELRQEREVLRLLSEAERINQGTPNVASQLFFHSELILQPR 67

Query: 70  SSLQGSSYLHPIMETRKSHLQVTDNLSDMGSRETVMHRTNCVDDSNIDTSLHL 123
             LQGS +    M+ R+  L+ T  LS++  R+ V+H T+  +DS++DTSLHL
Sbjct: 68  PPLQGSVHRESSMQIRRQVLE-TPILSNLQQRDMVLH-TSTFNDSDVDTSLHL 118

[Close]

BLAST of CmoCh09G009950 vs. NCBI nr
Match: gi|566153260|ref|XP_006369994.1| (hypothetical protein POPTR_0001s37300g [Populus trichocarpa])

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-15
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 1   MSNENCNARAMNSSIALLQERFRRLQKAKELRQQKEFRRLSSESIQANSAVCSEQTGLFF 60
           M  ++C+   ++SSIALLQERFR+L++AKE+RQQ+E  +L SE+    SA+  E + L  
Sbjct: 1   MGRQSCDPAIIHSSIALLQERFRQLERAKEMRQQRELLKLFSEADHVQSAMAYESSKL-L 60

Query: 61  HSELVLPPTSSLQGSSYLHPIMETRKSHLQV--TDNLSDMGSRETVMHRTNCVDDSNIDT 120
           HSEL LPP   +Q S    P M+T  + L V  T  ++++ S ++VM+ T   D+S++DT
Sbjct: 61  HSELTLPPRQPIQASLSFQPTMQTEHNDLLVNTTPVVANLCSTDSVMNLTYNFDESDVDT 120

Query: 121 SLHL 123
           SLHL
Sbjct: 121 SLHL 123

The following BLAST results are available for this feature:

BLAST of CmoCh09G009950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G009950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBC7_CUCSA	1.5e-50	87.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769680 PE=4 SV=1	[more]
B9T468_RICCO	1.3e-22	53.23	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0423940 PE=4 SV=1	[more]
A0A067L442_JATCU	3.7e-22	53.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01002 PE=4 SV=1	[more]
A0A0D2W6E9_GOSRA	1.4e-16	51.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G155000 PE=4 SV=1	[more]
U5GSJ4_POPTR	3.4e-15	44.35	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s37300g PE=4 SV=1	[more]

BLAST of CmoCh09G009950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh09G009950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203970\|gb\|KGN59103.1\|	2.1e-50	87.10	hypothetical protein Csa_3G769680 [Cucumis sativus]	[more]
gi\|223527175\|gb\|EEF29345.1\|	1.8e-22	53.23	conserved hypothetical protein [Ricinus communis]	[more]
gi\|643732053\|gb\|KDP39245.1\|	5.4e-22	53.23	hypothetical protein JCGZ_01002 [Jatropha curcas]	[more]
gi\|823265182\|ref\|XP_012465331.1\|	2.0e-16	51.33	PREDICTED: uncharacterized protein LOC105784090 [Gossypium raimondii]	[more]
gi\|566153260\|ref\|XP_006369994.1\|	4.9e-15	44.35	hypothetical protein POPTR_0001s37300g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G009950.1	CmoCh09G009950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 3..122 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G009950	CmaCh09G009910	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G009950	Cla003290	Watermelon (97103) v1	cmowmB001
CmoCh09G009950	Csa3G769680	Cucumber (Chinese Long) v2	cmocuB007
CmoCh09G009950	ClCG09G021090	Watermelon (Charleston Gray)	cmowcgB001
CmoCh09G009950	CSPI03G34620	Wild cucumber (PI 183967)	cmocpiB007
CmoCh09G009950	Lsi02G018510	Bottle gourd (USVL1VR-Ls)	cmolsiB006
CmoCh09G009950	Cp4.1LG02g00560	Cucurbita pepo (Zucchini)	cmocpeB021
CmoCh09G009950	Cp4.1LG06g08440	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G009950	CsaV3_7G018540	Cucumber (Chinese Long) v3	cmocucB0038
CmoCh09G009950	Cla97C09G182520	Watermelon (97103) v2	cmowmbB035
CmoCh09G009950	Bhi09G001453	Wax gourd	cmowgoB0021
CmoCh09G009950	CsGy7G008270	Cucumber (Gy14) v2	cgybcmoB868

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G009950	CmoCh01G011350	Cucurbita moschata (Rifu)	cmocmoB018

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G009950	Cucurbita maxima (Rimu)	cmacmoB436
CmoCh09G009950	Cucumber (Gy14) v1	cgycmoB0778
CmoCh09G009950	Wild cucumber (PI 183967)	cmocpiB032
CmoCh09G009950	Wild cucumber (PI 183967)	cmocpiB034
CmoCh09G009950	Cucumber (Chinese Long) v2	cmocuB031
CmoCh09G009950	Melon (DHL92) v3.5.1	cmomeB003
CmoCh09G009950	Melon (DHL92) v3.6.1	cmomedB007
CmoCh09G009950	Silver-seed gourd	carcmoB1193
CmoCh09G009950	Silver-seed gourd	carcmoB1211