CsaV3_7G018540 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G018540
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	SPBc2 prophage-derived uncharacterized protein yotK
Location	chr7 : 8479049 .. 8479423 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGAATGTCGTCTGAGTCCATACAGGCCAATACAGCAGTGTGCTCAGAGCAAACGGGGCTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAGTCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACGGATAATCTTACTTTATCAGACGTGGGGTCAAGAGAAAAAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

mRNA sequence

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGAATGTCGTCTGAGTCCATACAGGCCAATACAGCAGTGTGCTCAGAGCAAACGGGGCTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAGTCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACGGATAATCTTACTTTATCAGACGTGGGGTCAAGAGAAAAAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

Coding sequence (CDS)

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGAATGTCGTCTGAGTCCATACAGGCCAATACAGCAGTGTGCTCAGAGCAAACGGGGCTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAGTCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACGGATAATCTTACTTTATCAGACGTGGGGTCAAGAGAAAAAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

Protein sequence

MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYFHSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDTSLHL

Homology

[Close]

BLAST of CsaV3_7G018540 vs. NCBI nr
Match: KGN59103.1 (hypothetical protein Csa_3G769680 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 1.3e-59
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CsaV3_7G018540 vs. NCBI nr
Match: XP_025015545.1 (uncharacterized protein LOC112536879 [Ricinus communis] >EEF29345.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 116.3 bits (290), Expect = 7.4e-23
Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+  +++SSIALLQERFRQL++AKE+R+Q+E  R+ SE+ Q       EQ+  +F
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKAFEQSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSELVLP   PLQ S YLQP +++R + LQ+ +     D+ S+  VMH TN  D+S++DT
Sbjct: 61  HSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CsaV3_7G018540 vs. NCBI nr
Match: KDP39245.1 (hypothetical protein JCGZ_01002 [Jatropha curcas])

HSP 1 Score: 113.6 bits (283), Expect = 4.8e-22
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+   ++SSIALLQERFRQL+KAKE+R+Q+E  R+ SE+ Q  +A   E +  +F
Sbjct: 1   MGRQNCDPTVIHSSIALLQERFRQLEKAKEMRQQRELLRLFSEAEQVQSAKDYEPSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSEL L P  PLQGS Y+QP +E++ + L V +   L ++ S+  VMH  N  D+S++DT
Sbjct: 61  HSELTLSPGQPLQGSLYVQPNMENKYTDLPVNETPNLVNLWSKNTVMHNINNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CsaV3_7G018540 vs. NCBI nr
Match: XP_022753619.1 (uncharacterized protein LOC111301896 [Durio zibethinus])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 56/115 (48.70%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 10  AMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYFHSELVLPPR 69
           A++SSIALL+ERFRQLQ+AKE+R+++E  R+ SE+ + N A+  E + L+FHSEL+L PR
Sbjct: 8   AVHSSIALLRERFRQLQRAKEMRQEREVLRLLSEAERINPAIPHEASQLFFHSELILQPR 67

Query: 70  SPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDTSLHL 125
            PLQGS   +P + +  +  QV +  +LS++  R+ VMH T+ ++DS++DT+LHL
Sbjct: 68  PPLQGSLSSEPSMRNMHTQRQVIETPSLSNLRPRDTVMH-TSTLNDSDVDTTLHL 121

[Close]

BLAST of CsaV3_7G018540 vs. NCBI nr
Match: XP_022753618.1 (uncharacterized protein LOC111301893 [Durio zibethinus])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 56/115 (48.70%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 10  AMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYFHSELVLPPR 69
           A++SSIALL+ERFRQLQ+AKE+R+++E  R+ SE+ + N A+  E + L+FHSEL+L PR
Sbjct: 8   AVHSSIALLRERFRQLQRAKEMRQEREVLRLLSEAERINPAIPHEASQLFFHSELILQPR 67

Query: 70  SPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDTSLHL 125
            PLQGS   +P + +  +  QV +  +LS++  R+ VMH T+ ++DS++DT+LHL
Sbjct: 68  PPLQGSLSSEPSMRNMHTQRQVIETPSLSNLRPRDTVMH-TSTLNDSDVDTTLHL 121

[Close]

BLAST of CsaV3_7G018540 vs. TrEMBL
Match: tr|A0A0A0LBC7|A0A0A0LBC7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769680 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.5e-60
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CsaV3_7G018540 vs. TrEMBL
Match: tr|B9T468|B9T468_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0423940 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23
Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+  +++SSIALLQERFRQL++AKE+R+Q+E  R+ SE+ Q       EQ+  +F
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKAFEQSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSELVLP   PLQ S YLQP +++R + LQ+ +     D+ S+  VMH TN  D+S++DT
Sbjct: 61  HSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CsaV3_7G018540 vs. TrEMBL
Match: tr|A0A067L442|A0A067L442_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01002 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-22
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+   ++SSIALLQERFRQL+KAKE+R+Q+E  R+ SE+ Q  +A   E +  +F
Sbjct: 1   MGRQNCDPTVIHSSIALLQERFRQLEKAKEMRQQRELLRLFSEAEQVQSAKDYEPSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSEL L P  PLQGS Y+QP +E++ + L V +   L ++ S+  VMH  N  D+S++DT
Sbjct: 61  HSELTLSPGQPLQGSLYVQPNMENKYTDLPVNETPNLVNLWSKNTVMHNINNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of CsaV3_7G018540 vs. TrEMBL
Match: tr|A0A2C9W8T3|A0A2C9W8T3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G138300 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 58/125 (46.40%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+   M+SSIALLQERFRQL++AKE+R+Q+E  R+ SE+ Q  +A   E + L+F
Sbjct: 1   MGRQNCDPAIMHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKSAKGYEPSRLFF 60

Query: 61  HSELV-LPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNID 120
           HSEL+   P  PLQ S YL    E+  ++L++ +     ++ S+  V H TN  DDS++D
Sbjct: 61  HSELISSSPGQPLQASIYLHSNTENNHTNLRINETPDWVNIWSKNTVTHITNNFDDSDVD 120

Query: 121 TSLHL 125
           TSLHL
Sbjct: 121 TSLHL 125

[Close]

BLAST of CsaV3_7G018540 vs. TrEMBL
Match: tr|A0A2P5B3A2|A0A2P5B3A2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_274760 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 65/129 (50.39%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M++++C+  + +SSIALLQERFRQLQ+AKE+RE+KE  R+ SES ++N A   E TG +F
Sbjct: 1   MATKSCDGTSHHSSIALLQERFRQLQRAKEMREEKELLRLLSESERSNPAKRYEPTGFFF 60

Query: 61  HSELVLP--PRSPL-QGSSYLQPVLESRKSHLQVTDNLTL-SDVGSREKVM-HRTNCVDD 120
           HSE VLP   R P  Q S YLQP L+S+  +LQ  +  ++  +V S    M +RT  +DD
Sbjct: 61  HSESVLPNSHRPPSHQSSIYLQPNLQSKHGNLQANEATSIFGNVNSTGAAMNNRTYNLDD 120

Query: 121 SNIDTSLHL 125
           S++DTSLHL
Sbjct: 121 SDVDTSLHL 129

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018540 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59103.1	1.3e-59	100.00	hypothetical protein Csa_3G769680 [Cucumis sativus]	[more]
XP_025015545.1	7.4e-23	50.00	uncharacterized protein LOC112536879 [Ricinus communis] >EEF29345.1 conserved hy...	[more]
KDP39245.1	4.8e-22	49.19	hypothetical protein JCGZ_01002 [Jatropha curcas]	[more]
XP_022753619.1	3.8e-19	48.70	uncharacterized protein LOC111301896 [Durio zibethinus]	[more]
XP_022753618.1	3.8e-19	48.70	uncharacterized protein LOC111301893 [Durio zibethinus]	[more]

BLAST of CsaV3_7G018540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBC7\|A0A0A0LBC7_CUCSA	8.5e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769680 PE=4 SV=1	[more]
tr\|B9T468\|B9T468_RICCO	4.9e-23	50.00	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0423940 PE=4 SV=1	[more]
tr\|A0A067L442\|A0A067L442_JATCU	3.2e-22	49.19	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01002 PE=4 SV=1	[more]
tr\|A0A2C9W8T3\|A0A2C9W8T3_MANES	7.3e-19	46.40	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G138300 PE=4 SV=...	[more]
tr\|A0A2P5B3A2\|A0A2P5B3A2_PARAD	1.6e-18	50.39	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_274760 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G018540.1	CsaV3_7G018540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 1..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G018540	CSPI03G34620	Wild cucumber (PI 183967)	cpicucB196
CsaV3_7G018540	CmaCh09G009910	Cucurbita maxima (Rimu)	cmacucB0052
CsaV3_7G018540	CmaCh01G010890	Cucurbita maxima (Rimu)	cmacucB0585
CsaV3_7G018540	CmoCh09G009950	Cucurbita moschata (Rifu)	cmocucB0038
CsaV3_7G018540	CmoCh01G011350	Cucurbita moschata (Rifu)	cmocucB0575
CsaV3_7G018540	Cp4.1LG02g00560	Cucurbita pepo (Zucchini)	cpecucB0733
CsaV3_7G018540	Cp4.1LG06g08440	Cucurbita pepo (Zucchini)	cpecucB0991
CsaV3_7G018540	CsGy7G008270	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G018540	Cla003290	Watermelon (97103) v1	cucwmB594
CsaV3_7G018540	ClCG09G021090	Watermelon (Charleston Gray)	cucwcgB549
CsaV3_7G018540	Lsi02G018510	Bottle gourd (USVL1VR-Ls)	cuclsiB539
CsaV3_7G018540	Cla97C09G182520	Watermelon (97103) v2	cucwmbB595
CsaV3_7G018540	Bhi09G001453	Wax gourd	cucwgoB734

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G018540	Melon (DHL92) v3.5.1	cucmeB556
CsaV3_7G018540	Melon (DHL92) v3.6.1	cucmedB528
CsaV3_7G018540	Silver-seed gourd	carcucB0924
CsaV3_7G018540	Silver-seed gourd	carcucB0946
CsaV3_7G018540	Cucumber (Gy14) v1	cgycucB431