Csa3G769680 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G769680
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 29619533 .. 29619907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGAATGTCGTCTGAGTCCATACAGGCCAATACAGCAGTGTGCTCAGAGCAAACGGGGCTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAGTCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACGGATAATCTTACTTTATCAGACGTGGGGTCAAGAGAAAAAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

mRNA sequence

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGAATGTCGTCTGAGTCCATACAGGCCAATACAGCAGTGTGCTCAGAGCAAACGGGGCTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAGTCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACGGATAATCTTACTTTATCAGACGTGGGGTCAAGAGAAAAAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

Coding sequence (CDS)

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGAATGTCGTCTGAGTCCATACAGGCCAATACAGCAGTGTGCTCAGAGCAAACGGGGCTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAGTCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACGGATAATCTTACTTTATCAGACGTGGGGTCAAGAGAAAAAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

Protein sequence

MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYFHSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDTSLHL*

Homology

[Close]

BLAST of Csa3G769680 vs. TrEMBL
Match: A0A0A0LBC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769680 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.8e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Csa3G769680 vs. TrEMBL
Match: B9T468_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0423940 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-25
Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+  +++SSIALLQERFRQL++AKE+R+Q+E  R+ SE+ Q       EQ+  +F
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKAFEQSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSELVLP   PLQ S YLQP +++R + LQ+ +     D+ S+  VMH TN  D+S++DT
Sbjct: 61  HSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Csa3G769680 vs. TrEMBL
Match: A0A067L442_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01002 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+   ++SSIALLQERFRQL+KAKE+R+Q+E  R+ SE+ Q  +A   E +  +F
Sbjct: 1   MGRQNCDPTVIHSSIALLQERFRQLEKAKEMRQQRELLRLFSEAEQVQSAKDYEPSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSEL L P  PLQGS Y+QP +E++ + L V +   L ++ S+  VMH  N  D+S++DT
Sbjct: 61  HSELTLSPGQPLQGSLYVQPNMENKYTDLPVNETPNLVNLWSKNTVMHNINNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Csa3G769680 vs. TrEMBL
Match: U5GSJ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s37300g PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 53/124 (42.74%), Postives = 83/124 (66.94%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  ++C+   ++SSIALLQERFRQL++AKE+R+Q+E  ++ SE+    +A+  E + L  
Sbjct: 1   MGRQSCDPAIIHSSIALLQERFRQLERAKEMRQQRELLKLFSEADHVQSAMAYESSKL-L 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSEL LPPR P+Q S   QP +++  + L V     ++++ S + VM+ T   D+S++DT
Sbjct: 61  HSELTLPPRQPIQASLSFQPTMQTEHNDLLVNTTPVVANLCSTDSVMNLTYNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 123

[Close]

BLAST of Csa3G769680 vs. TrEMBL
Match: A5BGG0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g01810 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-19
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  ++ +   ++SSIALLQERFRQLQ+AKE+RE++E  R+ S+S   N     E +  +F
Sbjct: 1   MGRQSSDPIVIHSSIALLQERFRQLQRAKEMREERELLRLFSQSPGVNPTEFPEPSRSFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
            SEL+LP RSPL GS   QP   ++ S LQV +   L ++   EKV   +   DDS++DT
Sbjct: 61  QSELILPHRSPLPGSPSSQPNSHNKHSDLQVIETPILVNLWPSEKVYRASKNFDDSDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Csa3G769680 vs. NCBI nr
Match: gi|700203970|gb|KGN59103.1| (hypothetical protein Csa_3G769680 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.4e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Csa3G769680 vs. NCBI nr
Match: gi|223527175|gb|EEF29345.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-25
Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+  +++SSIALLQERFRQL++AKE+R+Q+E  R+ SE+ Q       EQ+  +F
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKAFEQSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSELVLP   PLQ S YLQP +++R + LQ+ +     D+ S+  VMH TN  D+S++DT
Sbjct: 61  HSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Csa3G769680 vs. NCBI nr
Match: gi|643732053|gb|KDP39245.1| (hypothetical protein JCGZ_01002 [Jatropha curcas])

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  +NC+   ++SSIALLQERFRQL+KAKE+R+Q+E  R+ SE+ Q  +A   E +  +F
Sbjct: 1   MGRQNCDPTVIHSSIALLQERFRQLEKAKEMRQQRELLRLFSEAEQVQSAKDYEPSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSEL L P  PLQGS Y+QP +E++ + L V +   L ++ S+  VMH  N  D+S++DT
Sbjct: 61  HSELTLSPGQPLQGSLYVQPNMENKYTDLPVNETPNLVNLWSKNTVMHNINNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Csa3G769680 vs. NCBI nr
Match: gi|566153260|ref|XP_006369994.1| (hypothetical protein POPTR_0001s37300g [Populus trichocarpa])

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-19
Identity = 53/124 (42.74%), Postives = 83/124 (66.94%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  ++C+   ++SSIALLQERFRQL++AKE+R+Q+E  ++ SE+    +A+  E + L  
Sbjct: 1   MGRQSCDPAIIHSSIALLQERFRQLERAKEMRQQRELLKLFSEADHVQSAMAYESSKL-L 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
           HSEL LPPR P+Q S   QP +++  + L V     ++++ S + VM+ T   D+S++DT
Sbjct: 61  HSELTLPPRQPIQASLSFQPTMQTEHNDLLVNTTPVVANLCSTDSVMNLTYNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 123

[Close]

BLAST of Csa3G769680 vs. NCBI nr
Match: gi|147863902|emb|CAN83217.1| (hypothetical protein VITISV_018000 [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 4.4e-19
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60
           M  ++ +   ++SSIALLQERFRQLQ+AKE+RE++E  R+ S+S   N     E +  +F
Sbjct: 1   MGRQSSDPIVIHSSIALLQERFRQLQRAKEMREERELLRLFSQSPGVNPTEFPEPSRSFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120
            SEL+LP RSPL GS   QP   ++ S LQV +   L ++   EKV   +   DDS++DT
Sbjct: 61  QSELILPHRSPLPGSPSSQPNSHNKHSDLQVIETPILVNLWPSEKVYRASKNFDDSDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

The following BLAST results are available for this feature:

BLAST of Csa3G769680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBC7_CUCSA	3.8e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769680 PE=4 SV=1	[more]
B9T468_RICCO	2.2e-25	50.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0423940 PE=4 SV=1	[more]
A0A067L442_JATCU	1.4e-24	49.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01002 PE=4 SV=1	[more]
U5GSJ4_POPTR	1.8e-19	42.74	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s37300g PE=4 SV=1	[more]
A5BGG0_VITVI	3.0e-19	45.97	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g01810 PE=4 SV=...	[more]

BLAST of Csa3G769680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203970\|gb\|KGN59103.1\|	5.4e-62	100.00	hypothetical protein Csa_3G769680 [Cucumis sativus]	[more]
gi\|223527175\|gb\|EEF29345.1\|	3.1e-25	50.00	conserved hypothetical protein [Ricinus communis]	[more]
gi\|643732053\|gb\|KDP39245.1\|	2.0e-24	49.19	hypothetical protein JCGZ_01002 [Jatropha curcas]	[more]
gi\|566153260\|ref\|XP_006369994.1\|	2.6e-19	42.74	hypothetical protein POPTR_0001s37300g [Populus trichocarpa]	[more]
gi\|147863902\|emb\|CAN83217.1\|	4.4e-19	45.97	hypothetical protein VITISV_018000 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU141457	cucumber EST collection version 3.0	transcribed_cluster
CU154162	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G769680.1	Csa3G769680.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU141457	CU141457	transcribed_cluster
CU154162	CU154162	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 8..35 scor
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 2..124 score: 1.7
None	No IPR available	PANTHER	PTHR34570:SF2	SUBFAMILY NOT NAMED	coord: 2..124 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G769680	Cla003290	Watermelon (97103) v1	cuwmB182
Csa3G769680	ClCG09G021090	Watermelon (Charleston Gray)	cuwcgB177
Csa3G769680	Lsi02G018510	Bottle gourd (USVL1VR-Ls)	culsiB181
Csa3G769680	Cla97C09G182520	Watermelon (97103) v2	cuwmbB255
Csa3G769680	Bhi09G001453	Wax gourd	cuwgoB343
Csa3G769680	CSPI03G34620	Wild cucumber (PI 183967)	cpicuB120
Csa3G769680	CmaCh09G009910	Cucurbita maxima (Rimu)	cmacuB016
Csa3G769680	CmoCh09G009950	Cucurbita moschata (Rifu)	cmocuB007
Csa3G769680	Cp4.1LG06g08440	Cucurbita pepo (Zucchini)	cpecuB778
Csa3G769680	Cp4.1LG02g00560	Cucurbita pepo (Zucchini)	cpecuB551
Csa3G769680	CsGy7G008270	Cucumber (Gy14) v2	cgybcuB311

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G769680	Wax gourd	cuwgoB248
Csa3G769680	Cucumber (Gy14) v1	cgycuB400
Csa3G769680	Melon (DHL92) v3.5.1	cumeB193
Csa3G769680	Melon (DHL92) v3.6.1	cumedB179
Csa3G769680	Silver-seed gourd	carcuB0919