CmoCh09G005870 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G005870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	MADS-box transcription factor 27
Location	Cmo_Chr09 : 2887070 .. 2888810 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAATCTGTTTCAGTACAACGCTCAGTAGAAAAGCGTTGATTCTGTTTGATCTCTCTTTGTCTTGATTCGTACCAGCTCCGCACTCAACCGCAAAAGTAAGTTACCATTTCCTGGAAATTTCCTGCGCATTTTCTCTCACGTTCTTTCATGATTGCTTCGCTTTTTCGTTTTCATGTCCGTCGTTTTTCATCTGTTATCGGAGTATTTTCTTCTGTTTTCTTTTTGATCGCATGCCGTAAATTCGTATCTGTATCCTTGATGTGCGATATCGAGGAAAAACAAAGTGTTTAGAGCCTTTCTTTCGTTTCCTTTTTTAGATTTTGTTGTGATCTTCTTTGTAGCTTGTTACTTGTGAAATTTATTGGAGTTTCGCTTATTTTCTGTAACTTTCTCCGAAAAATGGATAGAAGAAACGAGTGGCGGATCTAAGCATGGGGAGATGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAAGTGACTTTCTCAAAGCGTAGGAGCGGACTGCTGAAGAAGGCGGAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACTAACAAACTCTACGAATACTCCAGCTCCAGGTTCTATATATTCATCTTCTGCTTCTTCTACTGTTTGCCTCTATTTTCTTCTGCTTTTTTTCAGTCTGAATAATTGCTTCATTTCCGTACTCCAGTATAATAGATTAATACCTAGTGCGACAAGACATTGGTAGCATCGCTCTATTTAATTTATCTAATTTTTATTCATTTCATTGGCGAGTGTGCACCTTGAATCACGATTATGACTGATGCTTTATCGTAAAATACGACGTGTGCACACTGAGAAATAGGAATTCTAGAGCCGTAGTCTTTTGGTTTCAGGTCAATCTTTGTTCGTTTTTGTTATTTTATGAGGCTCAGTTCTGTCATTTGCTTTAACTATCTATCGCAGAAAATTCTCCGGTTTCAGCTTTAAACTACTCCGCTCATAACCTCGATTGGAATAGCAAGTGTCCTTAGATACTTAATTAGTTTATGCCTCGCTTTAGGATGAGTTGCAGCGATAATAGATCTCCAGTGTTGCAACATAAGTATCATCAGAACAGGTGGTTTATAATCGGAAGTGTAGGGTTAGAATGCTCATCGGCATTTTTATCAGAGAGGCATGTGGCTTATCCGAGAAAATTGATGCTACTTCTGAGAAATATAGTTAGATCATGCGAGGAAATATGTACATTCTCTTATAAGTAATGAGTGCATTAACTCGACCGATGGAGATGAAGGTCGTGCACGATCTGGAAGCTGGATAACCAGATCGTTTCGCACCATATAATCAGTTTCATTGTAACGGACGCCAGGTGAAATTGGTTTAACAATTGTTGGAAGAGTGGATTTCTGTGCTAATTTTAGTTAAAGTGGGATCTGCACGGCCTAATTGATCCGTCAATGTAGCTCCATCTATGCCTCCCGAGTTGGATACAATAAAATGGTCAACAGTACACTATTCCATCTGTAACTGTTATAGTTCGACTCAGAATTAATTCTAAACTCAACTGTTGGAGTTGAAGGACCAGATCTTATATAAGGTAAGAGTGTAGAAATAAAAGAAAGCGTAGTTTCTGACCTCACATTCATAACTACTTACGGTTAGACCTTAATGCCTCCTTCTGTAGGTTCAAAAGTGTTATATTCTCAAAGAACAAAGAAGCATGGTTCGAGCAATAG

mRNA sequence

TGTGAATCTGTTTCAGTACAACGCTCAGTAGAAAAGCGTTGATTCTGTTTGATCTCTCTTTGTCTTGATTCGTACCAGCTCCGCACTCAACCGCAAAAAAGAAACGAGTGGCGGATCTAAGCATGGGGAGATGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAAGTGACTTTCTCAAAGCGTAGGAGCGGACTGCTGAAGAAGGCGGAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACTAACAAACTCTACGAATACTCCAGCTCCAGGTTCAAAAGTGTTATATTCTCAAAGAACAAAGAAGCATGGTTCGAGCAATAG

Coding sequence (CDS)

ATGGGGAGATGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAAGTGACTTTCTCAAAGCGTAGGAGCGGACTGCTGAAGAAGGCGGAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACTAACAAACTCTACGAATACTCCAGCTCCAGGTTCAAAAGTGTTATATTCTCAAAGAACAAAGAAGCATGGTTCGAGCAATAG

Homology

[Close]

BLAST of CmoCh09G005870 vs. Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-22
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+G+ KKA+ELAILCDA+VG++IFSST +LYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            KSVI  + K+K+
Sbjct: 61 SMKSVIDRYGKSKD 74

[Close]

BLAST of CmoCh09G005870 vs. Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 5.8e-22
Identity = 51/66 (77.27%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+GLLKKA+EL+ILCDA+VG+++FSST +LYE+SS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Query: 61 RFKSVI 67
            K+VI
Sbjct: 61 NMKTVI 66

[Close]

BLAST of CmoCh09G005870 vs. Swiss-Prot
Match: ANR1_ARATH (MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-22
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEY-SS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+EL+ILCDA+VGVIIFSST KLY+Y S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61 SRFKSVIFSKNK 72
          S  K++I   N+
Sbjct: 61 SSMKTIIERYNR 72

[Close]

BLAST of CmoCh09G005870 vs. Swiss-Prot
Match: AGL16_ARATH (Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-22
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KI I+RI+NSTSRQVTFSKRR+GLLKKA+ELAILCDA+VGVIIFSST +LY++SSS
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61 RFKSVI 67
            KSVI
Sbjct: 61 SMKSVI 66

[Close]

BLAST of CmoCh09G005870 vs. Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-22
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVI+RID+STSRQVTFSKRR GL+KKA+ELAILCDA+VG+IIFSST KLY+++SS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61 RFKSVIFSKNK 72
            KSVI   NK
Sbjct: 61 SMKSVIDRYNK 71

[Close]

BLAST of CmoCh09G005870 vs. TrEMBL
Match: A0A0A0LGY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893290 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870 vs. TrEMBL
Match: A0A103Y5A4_CYNCS (Transcription factor, K-box (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_018944 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-22
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KI IRRIDNSTSRQVTFSKRR+GLLKKA+ELAILCDADVGVIIFSSTNKLYE+SS+
Sbjct: 1  MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGVIIFSSTNKLYEFSST 60

Query: 61 RFKSVI--FSKNKE 73
            KSV+  ++++KE
Sbjct: 61 SMKSVVQRYNRSKE 74

[Close]

BLAST of CmoCh09G005870 vs. TrEMBL
Match: U5DCD9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00208680 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-22
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+GLLKKA+ELAILCDADVG++IFSST KLYE+SSS
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGLVIFSSTGKLYEFSSS 60

Query: 61 RFKSVIFSKNK 72
            KS+I   NK
Sbjct: 61 SMKSIIERYNK 71

[Close]

BLAST of CmoCh09G005870 vs. TrEMBL
Match: B9SMY1_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_0482400 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+GLLKKA+ELAILCDA+VGV+IFSST KLY++SSS
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60

Query: 61 RFKSVI--FSKNKE 73
            KS+I  ++K+KE
Sbjct: 61 SMKSIIERYNKSKE 74

[Close]

BLAST of CmoCh09G005870 vs. TrEMBL
Match: X5DS45_COFAR (AGL16 OS=Coffea arabica GN=AGL16 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+GLLKKA+ELAILCDA+VGV+IFSST KLY++SSS
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60

Query: 61 RFKSVIFSKNK 72
            KSVI   NK
Sbjct: 61 SMKSVIERYNK 71

[Close]

BLAST of CmoCh09G005870 vs. TAIR10
Match: AT2G14210.1 (AT2G14210.1 AGAMOUS-like 44)

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-23
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEY-SS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+EL+ILCDA+VGVIIFSST KLY+Y S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61 SRFKSVIFSKNK 72
          S  K++I   N+
Sbjct: 61 SSMKTIIERYNR 72

[Close]

BLAST of CmoCh09G005870 vs. TAIR10
Match: AT4G37940.1 (AT4G37940.1 AGAMOUS-like 21)

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-23
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVI+RID+STSRQVTFSKRR GL+KKA+ELAILCDA+VG+IIFSST KLY+++SS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61 RFKSVIFSKNK 72
            KSVI   NK
Sbjct: 61 SMKSVIDRYNK 71

[Close]

BLAST of CmoCh09G005870 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-23
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KI I+RI+NSTSRQVTFSKRR+GLLKKA+ELAILCDA+VGVIIFSST +LY++SSS
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61 RFKSVI 67
            KSVI
Sbjct: 61 SMKSVI 66

[Close]

BLAST of CmoCh09G005870 vs. TAIR10
Match: AT2G22630.1 (AT2G22630.1 AGAMOUS-like 17)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-20
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVI++ID+STSRQVTFSKRR GL+KKA+ELAILCDA+V +IIFS+T+KLY+++SS
Sbjct: 1  MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61 RFKSVIFSKNKEAWFEQ 78
            KS I   N     EQ
Sbjct: 61 SVKSTIERFNTAKMEEQ 77

[Close]

BLAST of CmoCh09G005870 vs. TAIR10
Match: AT2G22540.1 (AT2G22540.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-19
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          M R KI IR+IDN+T+RQVTFSKRR GL KKAEEL++LCDADV +IIFSST KL+E+ SS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61 RFKSVIFSKNKEA 74
            K V+   N ++
Sbjct: 61 SMKEVLERHNLQS 73

[Close]

BLAST of CmoCh09G005870 vs. NCBI nr
Match: gi|700205146|gb|KGN60279.1| (hypothetical protein Csa_3G893290 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870 vs. NCBI nr
Match: gi|778687610|ref|XP_011652595.1| (PREDICTED: MADS-box transcription factor 23-like isoform X4 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870 vs. NCBI nr
Match: gi|659132309|ref|XP_008466133.1| (PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870 vs. NCBI nr
Match: gi|778687607|ref|XP_011652594.1| (PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870 vs. NCBI nr
Match: gi|659132307|ref|XP_008466132.1| (PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

The following BLAST results are available for this feature:

BLAST of CmoCh09G005870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MAD27_ORYSJ	2.6e-22	74.32	MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 ...	[more]
MAD57_ORYSJ	5.8e-22	77.27	MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 ...	[more]
ANR1_ARATH	9.8e-22	77.78	MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1	[more]
AGL16_ARATH	9.8e-22	80.30	Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1	[more]
AGL21_ARATH	9.8e-22	76.06	Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1	[more]

BLAST of CmoCh09G005870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGY3_CUCSA	1.4e-22	82.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893290 PE=4 SV=1	[more]
A0A103Y5A4_CYNCS	3.1e-22	79.73	Transcription factor, K-box (Fragment) OS=Cynara cardunculus var. scolymus GN=Cc...	[more]
U5DCD9_AMBTC	5.3e-22	81.69	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00208680 PE=4 SV=...	[more]
B9SMY1_RICCO	9.0e-22	78.38	Mads box protein, putative OS=Ricinus communis GN=RCOM_0482400 PE=4 SV=1	[more]
X5DS45_COFAR	1.2e-21	81.69	AGL16 OS=Coffea arabica GN=AGL16 PE=2 SV=1	[more]

BLAST of CmoCh09G005870 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14210.1	5.5e-23	77.78	AGAMOUS-like 44	[more]
AT4G37940.1	5.5e-23	76.06	AGAMOUS-like 21	[more]
AT3G57230.1	5.5e-23	80.30	AGAMOUS-like 16	[more]
AT2G22630.1	2.6e-20	66.23	AGAMOUS-like 17	[more]
AT2G22540.1	1.7e-19	64.38	K-box region and MADS-box transcription factor family protein	[more]

BLAST of CmoCh09G005870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205146\|gb\|KGN60279.1\|	2.0e-22	82.43	hypothetical protein Csa_3G893290 [Cucumis sativus]	[more]
gi\|778687610\|ref\|XP_011652595.1\|	2.0e-22	82.43	PREDICTED: MADS-box transcription factor 23-like isoform X4 [Cucumis sativus]	[more]
gi\|659132309\|ref\|XP_008466133.1\|	2.0e-22	82.43	PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis melo]	[more]
gi\|778687607\|ref\|XP_011652594.1\|	2.0e-22	82.43	PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis sativus]	[more]
gi\|659132307\|ref\|XP_008466132.1\|	2.0e-22	82.43	PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G005870.1	CmoCh09G005870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 7.7E-27coord: 3..23 score: 7.7E-27coord: 23..38 score: 7.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 score: 2.3
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 1.8
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 29
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..66 score: 2.49
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..66 score: 6.6
None	No IPR available	PANTHER	PTHR11945:SF147	AGAMOUS-LIKE MADS-BOX PROTEIN AGL16-RELATED	coord: 2..66 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G005870	Cla023075	Watermelon (97103) v1	cmowmB028
CmoCh09G005870	Lsi04G022910	Bottle gourd (USVL1VR-Ls)	cmolsiB010
CmoCh09G005870	Lsi08G010260	Bottle gourd (USVL1VR-Ls)	cmolsiB021
CmoCh09G005870	Cp4.1LG02g03920	Cucurbita pepo (Zucchini)	cmocpeB022
CmoCh09G005870	Cp4.1LG06g04120	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G005870	MELO3C007700.2	Melon (DHL92) v3.6.1	cmomedB040
CmoCh09G005870	MELO3C003502.2	Melon (DHL92) v3.6.1	cmomedB022
CmoCh09G005870	CsaV3_3G048150	Cucumber (Chinese Long) v3	cmocucB0009
CmoCh09G005870	CsaV3_6G044810	Cucumber (Chinese Long) v3	cmocucB0029
CmoCh09G005870	Cla97C11G220740	Watermelon (97103) v2	cmowmbB007
CmoCh09G005870	Cla97C01G017500	Watermelon (97103) v2	cmowmbB003
CmoCh09G005870	Bhi09G002132	Wax gourd	cmowgoB0020
CmoCh09G005870	CsGy3G043170	Cucumber (Gy14) v2	cgybcmoB258
CmoCh09G005870	CsGy6G029100	Cucumber (Gy14) v2	cgybcmoB685
CmoCh09G005870	Carg00418	Silver-seed gourd	carcmoB0908
CmoCh09G005870	Carg03014	Silver-seed gourd	carcmoB0865
CmoCh09G005870	Carg00740	Silver-seed gourd	carcmoB0540

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G005870	CmoCh01G015220	Cucurbita moschata (Rifu)	cmocmoB019

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G005870	Wax gourd	cmowgoB0014
CmoCh09G005870	Cucurbita moschata (Rifu)	cmocmoB031
CmoCh09G005870	Cucurbita moschata (Rifu)	cmocmoB005
CmoCh09G005870	Cucumber (Gy14) v1	cgycmoB0852
CmoCh09G005870	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G005870	Cucurbita maxima (Rimu)	cmacmoB437
CmoCh09G005870	Cucurbita maxima (Rimu)	cmacmoB753
CmoCh09G005870	Wild cucumber (PI 183967)	cmocpiB005
CmoCh09G005870	Cucumber (Chinese Long) v2	cmocuB005
CmoCh09G005870	Melon (DHL92) v3.5.1	cmomeB023
CmoCh09G005870	Melon (DHL92) v3.5.1	cmomeB038
CmoCh09G005870	Watermelon (Charleston Gray)	cmowcgB007
CmoCh09G005870	Cucurbita pepo (Zucchini)	cmocpeB005
CmoCh09G005870	Cucurbita pepo (Zucchini)	cmocpeB039
CmoCh09G005870	Bottle gourd (USVL1VR-Ls)	cmolsiB002
CmoCh09G005870	Cucumber (Gy14) v2	cgybcmoB137
CmoCh09G005870	Silver-seed gourd	carcmoB0075
CmoCh09G005870	Silver-seed gourd	carcmoB1110
CmoCh09G005870	Cucumber (Chinese Long) v3	cmocucB0003
CmoCh09G005870	Watermelon (97103) v2	cmowmbB027