CmoCh01G015220 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G015220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMADS-box transcription factor 27
LocationCmo_Chr01 : 11736935 .. 11740895 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAATTATGTGAACCCGCTTCAGTACAACGCTCCGTAAAAAAGCGTTGATTCTGTTGGATTTGATCTCTTTGCCTCGCCTCCAAACAGCACCGCACTCAACTGCGCAAGAGTAAGTTACGAACGATTTCCTGGATAATTCCTGCACATTTTCTCTTCCGTTCTTCGCTGCAGATTGCATCGCTTTCGTTTTCGTTTTCGTCGTTTTTCATCTGCTTTCGGAGTGTTTTTTTTAAAAAATTATTATTTAGTTTTTGATCGCTCGCAGTAGGAACGCATCTCTCTTCTCTATGTGTAATTATTCTGTGCGTTATCGAGGAAGAATGAAGTGTTTTAGAGAACTGTCGTTTTCTTTTCTGTGATTTGGTTGTGATTTTTCTTATATATTTGTTACTTGTGAAATTTACTTGAGTTTCGTTATTCTCTGAAAAAATTTCCGGAAAAATGGATAGAAGAATCGAGTTTCGGATCTAAGAATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGAAGGAGTGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGTGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTTTATGAATACTCCAGCACCAGGTTCTATGATATTCATCTTCTGTTTCTTTACTGTTTGCCTTTATTTTCTTCTACTTTTTTCAGTCTGAATAATTTCTCCGTTTTCGAACTTTATTATAATAGATTAATATCTAGTGCGACAACACATTGGTAGCCTCGCTCAATTAATTTACCTGGTTTTTATTCATTATATTGGCGAGCGTGCACCTTGAATCACGATTATGACTGTATGCTTTATAGTAAAATAAAATGTTGTGCATACTGAGAAATAGGAATTCTAGAGCCTATAGTGTTCAGGTTTTTTGACGTCTTGTTCTTTCTTGTGATTTTATGAGGCTCAGTTCTGTTATTTGCCTGAGATCTCTATCGTTCAAACTTCGATGGCTTCTGCTTTCAACTACTCCGCTCATGAACTCTATTGGCATATATCAAGTATCTTTAGAGTCATTGGTTGCCAGATACTCCAATAGTTTATGCCTATAGGATGGACTGCTATAATGCGAATTTGTGGCTTAGTTTCGTAGGATAAGAGTGGTGGATAACCTAACCAAAGAGAAGTTAGCAGTCCAAAAATTGCATTCGAACTTATACTTTAGTACTGTTCAAAGATCCAAGTGAACATGTTGTAAAGGACGAATATGGTTAAGAGATTTTCGGAGTTGCGATTCTCCTTGTAGCATAATAATCATAGAACTCGTTTAGAATTGGAAAGGGAGGGTGATAATGCTCAGTCATTTTTATCGGAGATTCAAATGACTTATTCATGCGAGAAATTACGTACCATCTCATGATTGCAAATCTCTGGATGGATGGATATGAAGGTCGTGCACGATACTGGAATCAAATCGTTTTGCACCATACAATTATCAATTTATCCTTGTAATGGATGCCCACCAAGAGAAATAGCGCTGATTGGAAAAGTGGATCTCTGTGCTATTTTTAGTTCTAGGAATCCGAACAGCCTAATTGGTCAATCAATGTTGCTCAATGTATGCTTCTTGGATTGGATCGAATGATATGGGTCAACAGTACGTTATTTCAATCATAGCTGTTATGATTCGACTCAAAATTGTTTCCAACAGAATCCCTTTGGTTTAAGGAATGGACCAGATCTCATATTAGTTCGGAGTGTAGGATTAAAAGAAACCATAGTTTTCCGACTTCACCATTCATAATTAGGGATGGTTAGACACTCATTGTTCCTTCTTTAGTTTCAAATTACTTCTTCCACATTCTTAACGAGTGTTGTATTCTAAAAGAACAAAGAAGCATGGTTTGAACAATAGATTTAGTCCATAAGGGGCAATACTTTTACGAAATAGGGTTAAGTATGCACAGAAGTCGGTCGGGCCGTCTCACGCAGTTTGATGTTGTGTGGTTCGGTTTCTGTGTTCTCGTACCTTCTGATTATTTAATCTTAATAATAATTTTTAGCATCTTTGTTTTCTGCTTTTGAAAGAATTTGTATTTGAGTCTATCACATGTTAGAAAAGGTTTTGCATTAAATCTATTATCAATAATTTTTTCACGGTATTTGTCTCAAGTTTTTTGGATGGGAAAAGAAGGGAATAGACATGGATTTTGCCTTGTCTGTTTCAAGTTTTTGAAATATGTTGTCGGTAAAAGCTTTTCCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTACATTTATTCATCTTTCTTTCTTTCTTTTTTCTTTCTTATTACTATCATTTACTTCTGCTATACATAGTATTCTATTGAACATGTATTATTAATTATTTAATTTGATGATTGAACTAATTATTTATCATTAAAATTTGTATAACTTTTTTTAAAATTATTTATTTGAAAATAGTTATTAATATTGATGGCTAATGAAATTAAAAACCTAAAATTTAATTGTATGTTATTTATAGTATACTACTAATGAAAATTATATTAAAATTTAAGGTATATTACTGTTTTATTAATAAATTATTATAATGGTATATAACATTTAATTTTTAAAATATTAGTTGGACGGAATATTTACAATAATAAGTATATTTTATTAAAATTATCTATTTGAGGATGATTATTTAGTTAAAATTATTTTAAGAATTTAAAATAATTAATAGTAGTTAAGTATCTAATGGTATTTTAATAATTTAAAATAGCAAACCATAGTCTATTATCTAAAATTAAATATTGTATCAAATATAAGATATAACACTTTTCATGCAACACCAAACACTTTCATTTGTAAGAATTTTTTTTCCAAACATTCTTTTCTCATTCTTCATAGCAAATGACTCCTTACATGGTATTTTTTTTTCCCTAAAGTGTACTTCAAAACCTTCCCTTATTCAAGATTGTTTTCTATGATTTCTGCATTTAAAACTCAAAACTCTAGTTGTATTACATTTTGCATTTAAGTAAACAGGCCTTAGGCCTTAAGTGTTCAGTTATATTTTGCCAATTTGTTTTCGATAATCTAAACTTAGTCGTATCTTCAACAAAAATAATAATAATAATAATAATAGTTATTAAGTCATATAGTTGATATTATTTCATAAGCTACTTTCACCGAGTATTGATTTTTTTTTTTTAGAACAAAACTTCAGTACTTAAAATCTTCACTTGAAGAAGCTTTCAAACATAGGACATAGTTATAAAATTTGTTTGAAACTAGAGTGGCGATTTGATAACGTTTATCTTATCATTTATCTATTTCAAAAGAAGAGTAAGTTTTGCACTTTCGTTTTTATGTAAGCCAGAAAAGCCTGTTGTAAGAATATTATATTTAGAGAATAAGAGAAAAAGATGGATACATGGGTTTAAAAGGAGAAGAAAAATAGTTGTATGAAATTCGATTGAGTCCTACAACACAATCTTAGCTAAGCGCTGCACTCATGTTTTGCTTAGTTCATTTCGTCTCAATGAAACTCATATTCTATTGATTGAGAAGAGTGCTTGGTCAACTCTTTACATACCATTGGTCACTCATCACTCTGAATCCCTGTGAGTCATTATGATTTGCTTGTTCCGGAAAATATCTTATCCCCTAGAGGCCGTAGAGAGTTCAGAATTCTAATTTGTTCCAATTCTGGGAATAGAAATGATATCCATAGAAATACAGGATTTTACAATGCAAATAAGGTAAAAACGCATGATCAAGTTCATCATCTCTCTGAATCCCTGTGAGTCATCATCTCTCTGAATCCTTGTGAGTCATCATCTCTTCCAGTTTACACATAATTTAAACTACATATGCCATAAATTAGTGGCTTCATGTTATTCTTTTTAAACTTCCTTTGTGTATGAATTATGTAAAACTTGATTCTTAGAAAAGATTAA

mRNA sequence

CTGAATTATGTGAACCCGCTTCAGTACAACGCTCCGTAAAAAAGCGTTGATTCTGTTGGATTTGATCTCTTTGCCTCGCCTCCAAACAGCACCGCACTCAACTGCGCAAGAAAGAATCGAGTTTCGGATCTAAGAATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGAAGGAGTGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGTGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTTTATGAATACTCCAGCACCAGAAAAGATTAA

Coding sequence (CDS)

ATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGAAGGAGTGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGTGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTTTATGAATACTCCAGCACCAGAAAAGATTAA
Homology
[Close]
BLAST of CmoCh01G015220 vs. Swiss-Prot
Match: ANR1_ARATH (MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.6e-23
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSS 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKEL+ILCDA+VGVIIFSST KLY+Y+S
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYAS 59

[Close]
BLAST of CmoCh01G015220 vs. Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-22
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRR+G+ KKAKELAILCDA+VG++IFSST +LYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

[Close]
BLAST of CmoCh01G015220 vs. Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-22
Identity = 51/60 (85.00%), Postives = 59/60 (98.33%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRR+GLLKKAKEL+ILCDA+VG+++FSST +LYE+SST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

[Close]
BLAST of CmoCh01G015220 vs. Swiss-Prot
Match: AGL16_ARATH (Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-21
Identity = 50/60 (83.33%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKI I+RI+NSTSRQVTFSKRR+GLLKKAKELAILCDA+VGVIIFSST +LY++SS+
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

[Close]
BLAST of CmoCh01G015220 vs. Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.8e-21
Identity = 49/60 (81.67%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVI+RID+STSRQVTFSKRR GL+KKAKELAILCDA+VG+IIFSST KLY+++S+
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

[Close]
BLAST of CmoCh01G015220 vs. TrEMBL
Match: A0A0A0LGY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893290 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

[Close]
BLAST of CmoCh01G015220 vs. TrEMBL
Match: A0A067KVR8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09931 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-22
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 1   MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
           MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKA+EL+ILCDA+VGVIIFSST KLY+Y+ST
Sbjct: 108 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAST 167

Query: 61  RKD 64
           R D
Sbjct: 168 RSD 170

[Close]
BLAST of CmoCh01G015220 vs. TrEMBL
Match: A0A061E0X6_THECC (AGAMOUS-like 16 OS=Theobroma cacao GN=TCM_007324 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-22
Identity = 55/63 (87.30%), Postives = 62/63 (98.41%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRR+GLLKKA+EL+ILCDA+VG+IIFSSTSKLY+Y+ST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIIFSSTSKLYDYAST 60

Query: 61 RKD 64
          R D
Sbjct: 61 RSD 63

[Close]
BLAST of CmoCh01G015220 vs. TrEMBL
Match: U5GWY9_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s29100g PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-22
Identity = 54/63 (85.71%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELA+LCDA+VGVI+FSST KLY++++T
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAVLCDAEVGVIVFSSTGKLYDHANT 60

Query: 61 RKD 64
          R D
Sbjct: 61 RSD 63

[Close]
BLAST of CmoCh01G015220 vs. TrEMBL
Match: K4BUA6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-22
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRR+GLLKKAKELAILCDA+ GVIIFSST KLYEYS+T
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEAGVIIFSSTGKLYEYSNT 60

Query: 61 RK 63
           K
Sbjct: 61 SK 62

[Close]
BLAST of CmoCh01G015220 vs. TAIR10
Match: AT2G14210.1 (AT2G14210.1 AGAMOUS-like 44)

HSP 1 Score: 107.5 bits (267), Expect = 3.1e-24
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSS 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKEL+ILCDA+VGVIIFSST KLY+Y+S
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYAS 59

[Close]
BLAST of CmoCh01G015220 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-22
Identity = 50/60 (83.33%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKI I+RI+NSTSRQVTFSKRR+GLLKKAKELAILCDA+VGVIIFSST +LY++SS+
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

[Close]
BLAST of CmoCh01G015220 vs. TAIR10
Match: AT4G37940.1 (AT4G37940.1 AGAMOUS-like 21)

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-22
Identity = 49/60 (81.67%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVI+RID+STSRQVTFSKRR GL+KKAKELAILCDA+VG+IIFSST KLY+++S+
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

[Close]
BLAST of CmoCh01G015220 vs. TAIR10
Match: AT2G22630.1 (AT2G22630.1 AGAMOUS-like 17)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-20
Identity = 46/60 (76.67%), Postives = 57/60 (95.00%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVI++ID+STSRQVTFSKRR GL+KKAKELAILCDA+V +IIFS+T KLY+++S+
Sbjct: 1  MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

[Close]
BLAST of CmoCh01G015220 vs. TAIR10
Match: AT5G13790.1 (AT5G13790.1 AGAMOUS-like 15)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-20
Identity = 45/60 (75.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKI I+RI+N+ SRQVTFSKRRSGLLKKA+EL++LCDA+V VI+FS + KL+EYSST
Sbjct: 1  MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60

[Close]
BLAST of CmoCh01G015220 vs. NCBI nr
Match: gi|700205146|gb|KGN60279.1| (hypothetical protein Csa_3G893290 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

[Close]
BLAST of CmoCh01G015220 vs. NCBI nr
Match: gi|778687604|ref|XP_011652593.1| (PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

[Close]
BLAST of CmoCh01G015220 vs. NCBI nr
Match: gi|659132307|ref|XP_008466132.1| (PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

[Close]
BLAST of CmoCh01G015220 vs. NCBI nr
Match: gi|778687597|ref|XP_004136416.2| (PREDICTED: MADS-box transcription factor 23-like isoform X1 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

[Close]
BLAST of CmoCh01G015220 vs. NCBI nr
Match: gi|659132305|ref|XP_008466131.1| (PREDICTED: MADS-box transcription factor 23-like isoform X1 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

The following BLAST results are available for this feature:
BLAST of CmoCh01G015220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ANR1_ARATH5.6e-2391.53MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1[more]
MAD27_ORYSJ1.6e-2286.67MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 ... [more]
MAD57_ORYSJ1.6e-2285.00MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 ... [more]
AGL16_ARATH3.1e-2183.33Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1[more]
AGL21_ARATH6.8e-2181.67Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1[more]
BLAST of CmoCh01G015220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGY3_CUCSA1.7e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893290 PE=4 SV=1[more]
A0A067KVR8_JATCU1.5e-2288.89Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09931 PE=4 SV=1[more]
A0A061E0X6_THECC2.5e-2287.30AGAMOUS-like 16 OS=Theobroma cacao GN=TCM_007324 PE=4 SV=1[more]
U5GWY9_POPTR4.3e-2285.71Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s29100g P... [more]
K4BUA6_SOLLC5.6e-2290.32Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of CmoCh01G015220 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14210.13.1e-2491.53 AGAMOUS-like 44[more]
AT3G57230.11.7e-2283.33 AGAMOUS-like 16[more]
AT4G37940.13.8e-2281.67 AGAMOUS-like 21[more]
AT2G22630.12.1e-2076.67 AGAMOUS-like 17[more]
AT5G13790.12.1e-2075.00 AGAMOUS-like 15[more]
BLAST of CmoCh01G015220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205146|gb|KGN60279.1|2.5e-23100.00hypothetical protein Csa_3G893290 [Cucumis sativus][more]
gi|778687604|ref|XP_011652593.1|2.5e-23100.00PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis sativus][more]
gi|659132307|ref|XP_008466132.1|2.5e-23100.00PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo][more]
gi|778687597|ref|XP_004136416.2|2.5e-23100.00PREDICTED: MADS-box transcription factor 23-like isoform X1 [Cucumis sativus][more]
gi|659132305|ref|XP_008466131.1|2.5e-23100.00PREDICTED: MADS-box transcription factor 23-like isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048527 lateral root development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010167 response to nitrate
biological_process GO:0007584 response to nutrient
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008134 transcription factor binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G015220.1CmoCh01G015220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 4.1E-28coord: 3..23
score: 4.1E-28coord: 38..59
score: 4.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
score: 6.8
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 8.4
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
scor
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..61
score:
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 2..60
score: 3.66
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..60
score: 1.0
NoneNo IPR availablePANTHERPTHR11945:SF147AGAMOUS-LIKE MADS-BOX PROTEIN AGL16-RELATEDcoord: 2..60
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G015220Cla023075Watermelon (97103) v1cmowmB456
CmoCh01G015220Cp4.1LG06g04120Cucurbita pepo (Zucchini)cmocpeB466
CmoCh01G015220CsGy3G043170Cucumber (Gy14) v2cgybcmoB338
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G015220CmoCh09G005870Cucurbita moschata (Rifu)cmocmoB019
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G015220Cucurbita maxima (Rimu)cmacmoB049
CmoCh01G015220Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G015220Wild cucumber (PI 183967)cmocpiB445
CmoCh01G015220Wild cucumber (PI 183967)cmocpiB461
CmoCh01G015220Cucumber (Chinese Long) v2cmocuB441
CmoCh01G015220Melon (DHL92) v3.5.1cmomeB407
CmoCh01G015220Watermelon (Charleston Gray)cmowcgB391
CmoCh01G015220Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G015220Bottle gourd (USVL1VR-Ls)cmolsiB420
CmoCh01G015220Melon (DHL92) v3.6.1cmomedB466
CmoCh01G015220Silver-seed gourdcarcmoB0873
CmoCh01G015220Silver-seed gourdcarcmoB0922
CmoCh01G015220Cucumber (Chinese Long) v3cmocucB0531
CmoCh01G015220Watermelon (97103) v2cmowmbB437
CmoCh01G015220Wax gourdcmowgoB0615
CmoCh01G015220Cucumber (Gy14) v1cgycmoB0863