CmoCh09G005870.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G005870.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	MADS-box transcription factor 27
Location	Cmo_Chr09 : 2887070 .. 2888810 (+)
Sequence length	356

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAATCTGTTTCAGTACAACGCTCAGTAGAAAAGCGTTGATTCTGTTTGATCTCTCTTTGTCTTGATTCGTACCAGCTCCGCACTCAACCGCAAAAGTAAGTTACCATTTCCTGGAAATTTCCTGCGCATTTTCTCTCACGTTCTTTCATGATTGCTTCGCTTTTTCGTTTTCATGTCCGTCGTTTTTCATCTGTTATCGGAGTATTTTCTTCTGTTTTCTTTTTGATCGCATGCCGTAAATTCGTATCTGTATCCTTGATGTGCGATATCGAGGAAAAACAAAGTGTTTAGAGCCTTTCTTTCGTTTCCTTTTTTAGATTTTGTTGTGATCTTCTTTGTAGCTTGTTACTTGTGAAATTTATTGGAGTTTCGCTTATTTTCTGTAACTTTCTCCGAAAAATGGATAGAAGAAACGAGTGGCGGATCTAAGCATGGGGAGATGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAAGTGACTTTCTCAAAGCGTAGGAGCGGACTGCTGAAGAAGGCGGAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACTAACAAACTCTACGAATACTCCAGCTCCAGGTTCTATATATTCATCTTCTGCTTCTTCTACTGTTTGCCTCTATTTTCTTCTGCTTTTTTTCAGTCTGAATAATTGCTTCATTTCCGTACTCCAGTATAATAGATTAATACCTAGTGCGACAAGACATTGGTAGCATCGCTCTATTTAATTTATCTAATTTTTATTCATTTCATTGGCGAGTGTGCACCTTGAATCACGATTATGACTGATGCTTTATCGTAAAATACGACGTGTGCACACTGAGAAATAGGAATTCTAGAGCCGTAGTCTTTTGGTTTCAGGTCAATCTTTGTTCGTTTTTGTTATTTTATGAGGCTCAGTTCTGTCATTTGCTTTAACTATCTATCGCAGAAAATTCTCCGGTTTCAGCTTTAAACTACTCCGCTCATAACCTCGATTGGAATAGCAAGTGTCCTTAGATACTTAATTAGTTTATGCCTCGCTTTAGGATGAGTTGCAGCGATAATAGATCTCCAGTGTTGCAACATAAGTATCATCAGAACAGGTGGTTTATAATCGGAAGTGTAGGGTTAGAATGCTCATCGGCATTTTTATCAGAGAGGCATGTGGCTTATCCGAGAAAATTGATGCTACTTCTGAGAAATATAGTTAGATCATGCGAGGAAATATGTACATTCTCTTATAAGTAATGAGTGCATTAACTCGACCGATGGAGATGAAGGTCGTGCACGATCTGGAAGCTGGATAACCAGATCGTTTCGCACCATATAATCAGTTTCATTGTAACGGACGCCAGGTGAAATTGGTTTAACAATTGTTGGAAGAGTGGATTTCTGTGCTAATTTTAGTTAAAGTGGGATCTGCACGGCCTAATTGATCCGTCAATGTAGCTCCATCTATGCCTCCCGAGTTGGATACAATAAAATGGTCAACAGTACACTATTCCATCTGTAACTGTTATAGTTCGACTCAGAATTAATTCTAAACTCAACTGTTGGAGTTGAAGGACCAGATCTTATATAAGGTAAGAGTGTAGAAATAAAAGAAAGCGTAGTTTCTGACCTCACATTCATAACTACTTACGGTTAGACCTTAATGCCTCCTTCTGTAGGTTCAAAAGTGTTATATTCTCAAAGAACAAAGAAGCATGGTTCGAGCAATAG

mRNA sequence

TGTGAATCTGTTTCAGTACAACGCTCAGTAGAAAAGCGTTGATTCTGTTTGATCTCTCTTTGTCTTGATTCGTACCAGCTCCGCACTCAACCGCAAAAAAGAAACGAGTGGCGGATCTAAGCATGGGGAGATGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAAGTGACTTTCTCAAAGCGTAGGAGCGGACTGCTGAAGAAGGCGGAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACTAACAAACTCTACGAATACTCCAGCTCCAGGTTCAAAAGTGTTATATTCTCAAAGAACAAAGAAGCATGGTTCGAGCAATAG

Coding sequence (CDS)

ATGGGGAGATGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAAGTGACTTTCTCAAAGCGTAGGAGCGGACTGCTGAAGAAGGCGGAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACTAACAAACTCTACGAATACTCCAGCTCCAGGTTCAAAAGTGTTATATTCTCAAAGAACAAAGAAGCATGGTTCGAGCAATAG

Homology

[Close]

BLAST of CmoCh09G005870.1 vs. Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-22
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+G+ KKA+ELAILCDA+VG++IFSST +LYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            KSVI  + K+K+
Sbjct: 61 SMKSVIDRYGKSKD 74

[Close]

BLAST of CmoCh09G005870.1 vs. Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 5.8e-22
Identity = 51/66 (77.27%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+GLLKKA+EL+ILCDA+VG+++FSST +LYE+SS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Query: 61 RFKSVI 67
            K+VI
Sbjct: 61 NMKTVI 66

[Close]

BLAST of CmoCh09G005870.1 vs. Swiss-Prot
Match: ANR1_ARATH (MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-22
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEY-SS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+EL+ILCDA+VGVIIFSST KLY+Y S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61 SRFKSVIFSKNK 72
          S  K++I   N+
Sbjct: 61 SSMKTIIERYNR 72

[Close]

BLAST of CmoCh09G005870.1 vs. Swiss-Prot
Match: AGL16_ARATH (Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-22
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KI I+RI+NSTSRQVTFSKRR+GLLKKA+ELAILCDA+VGVIIFSST +LY++SSS
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61 RFKSVI 67
            KSVI
Sbjct: 61 SMKSVI 66

[Close]

BLAST of CmoCh09G005870.1 vs. Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-22
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVI+RID+STSRQVTFSKRR GL+KKA+ELAILCDA+VG+IIFSST KLY+++SS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61 RFKSVIFSKNK 72
            KSVI   NK
Sbjct: 61 SMKSVIDRYNK 71

[Close]

BLAST of CmoCh09G005870.1 vs. TrEMBL
Match: A0A0A0LGY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893290 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870.1 vs. TrEMBL
Match: A0A103Y5A4_CYNCS (Transcription factor, K-box (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_018944 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-22
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KI IRRIDNSTSRQVTFSKRR+GLLKKA+ELAILCDADVGVIIFSSTNKLYE+SS+
Sbjct: 1  MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGVIIFSSTNKLYEFSST 60

Query: 61 RFKSVI--FSKNKE 73
            KSV+  ++++KE
Sbjct: 61 SMKSVVQRYNRSKE 74

[Close]

BLAST of CmoCh09G005870.1 vs. TrEMBL
Match: U5DCD9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00208680 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-22
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+GLLKKA+ELAILCDADVG++IFSST KLYE+SSS
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGLVIFSSTGKLYEFSSS 60

Query: 61 RFKSVIFSKNK 72
            KS+I   NK
Sbjct: 61 SMKSIIERYNK 71

[Close]

BLAST of CmoCh09G005870.1 vs. TrEMBL
Match: B9SMY1_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_0482400 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+GLLKKA+ELAILCDA+VGV+IFSST KLY++SSS
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60

Query: 61 RFKSVI--FSKNKE 73
            KS+I  ++K+KE
Sbjct: 61 SMKSIIERYNKSKE 74

[Close]

BLAST of CmoCh09G005870.1 vs. TrEMBL
Match: X5DS45_COFAR (AGL16 OS=Coffea arabica GN=AGL16 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRR+GLLKKA+ELAILCDA+VGV+IFSST KLY++SSS
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60

Query: 61 RFKSVIFSKNK 72
            KSVI   NK
Sbjct: 61 SMKSVIERYNK 71

[Close]

BLAST of CmoCh09G005870.1 vs. TAIR10
Match: AT2G14210.1 (AT2G14210.1 AGAMOUS-like 44)

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-23
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEY-SS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+EL+ILCDA+VGVIIFSST KLY+Y S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61 SRFKSVIFSKNK 72
          S  K++I   N+
Sbjct: 61 SSMKTIIERYNR 72

[Close]

BLAST of CmoCh09G005870.1 vs. TAIR10
Match: AT4G37940.1 (AT4G37940.1 AGAMOUS-like 21)

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-23
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVI+RID+STSRQVTFSKRR GL+KKA+ELAILCDA+VG+IIFSST KLY+++SS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61 RFKSVIFSKNK 72
            KSVI   NK
Sbjct: 61 SMKSVIDRYNK 71

[Close]

BLAST of CmoCh09G005870.1 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-23
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KI I+RI+NSTSRQVTFSKRR+GLLKKA+ELAILCDA+VGVIIFSST +LY++SSS
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61 RFKSVI 67
            KSVI
Sbjct: 61 SMKSVI 66

[Close]

BLAST of CmoCh09G005870.1 vs. TAIR10
Match: AT2G22630.1 (AT2G22630.1 AGAMOUS-like 17)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-20
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVI++ID+STSRQVTFSKRR GL+KKA+ELAILCDA+V +IIFS+T+KLY+++SS
Sbjct: 1  MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61 RFKSVIFSKNKEAWFEQ 78
            KS I   N     EQ
Sbjct: 61 SVKSTIERFNTAKMEEQ 77

[Close]

BLAST of CmoCh09G005870.1 vs. TAIR10
Match: AT2G22540.1 (AT2G22540.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-19
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          M R KI IR+IDN+T+RQVTFSKRR GL KKAEEL++LCDADV +IIFSST KL+E+ SS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61 RFKSVIFSKNKEA 74
            K V+   N ++
Sbjct: 61 SMKEVLERHNLQS 73

[Close]

BLAST of CmoCh09G005870.1 vs. NCBI nr
Match: gi|700205146|gb|KGN60279.1| (hypothetical protein Csa_3G893290 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870.1 vs. NCBI nr
Match: gi|778687610|ref|XP_011652595.1| (PREDICTED: MADS-box transcription factor 23-like isoform X4 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870.1 vs. NCBI nr
Match: gi|659132309|ref|XP_008466133.1| (PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870.1 vs. NCBI nr
Match: gi|778687607|ref|XP_011652594.1| (PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

[Close]

BLAST of CmoCh09G005870.1 vs. NCBI nr
Match: gi|659132307|ref|XP_008466132.1| (PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSS 60
          MGR KIVIRRIDNSTSRQVTFSKRRSGLLKKA+ELAILCDADVGVIIFSST+KLYEYSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 61 RFKSVI--FSKNKE 73
            K++I  ++K KE
Sbjct: 61 SMKALIERYNKTKE 74

The following BLAST results are available for this feature:

BLAST of CmoCh09G005870.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MAD27_ORYSJ	2.6e-22	74.32	MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 ...	[more]
MAD57_ORYSJ	5.8e-22	77.27	MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 ...	[more]
ANR1_ARATH	9.8e-22	77.78	MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1	[more]
AGL16_ARATH	9.8e-22	80.30	Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1	[more]
AGL21_ARATH	9.8e-22	76.06	Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1	[more]

BLAST of CmoCh09G005870.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGY3_CUCSA	1.4e-22	82.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893290 PE=4 SV=1	[more]
A0A103Y5A4_CYNCS	3.1e-22	79.73	Transcription factor, K-box (Fragment) OS=Cynara cardunculus var. scolymus GN=Cc...	[more]
U5DCD9_AMBTC	5.3e-22	81.69	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00208680 PE=4 SV=...	[more]
B9SMY1_RICCO	9.0e-22	78.38	Mads box protein, putative OS=Ricinus communis GN=RCOM_0482400 PE=4 SV=1	[more]
X5DS45_COFAR	1.2e-21	81.69	AGL16 OS=Coffea arabica GN=AGL16 PE=2 SV=1	[more]

BLAST of CmoCh09G005870.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14210.1	5.5e-23	77.78	AGAMOUS-like 44	[more]
AT4G37940.1	5.5e-23	76.06	AGAMOUS-like 21	[more]
AT3G57230.1	5.5e-23	80.30	AGAMOUS-like 16	[more]
AT2G22630.1	2.6e-20	66.23	AGAMOUS-like 17	[more]
AT2G22540.1	1.7e-19	64.38	K-box region and MADS-box transcription factor family protein	[more]

BLAST of CmoCh09G005870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205146\|gb\|KGN60279.1\|	2.0e-22	82.43	hypothetical protein Csa_3G893290 [Cucumis sativus]	[more]
gi\|778687610\|ref\|XP_011652595.1\|	2.0e-22	82.43	PREDICTED: MADS-box transcription factor 23-like isoform X4 [Cucumis sativus]	[more]
gi\|659132309\|ref\|XP_008466133.1\|	2.0e-22	82.43	PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis melo]	[more]
gi\|778687607\|ref\|XP_011652594.1\|	2.0e-22	82.43	PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis sativus]	[more]
gi\|659132307\|ref\|XP_008466132.1\|	2.0e-22	82.43	PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh09G005870	CmoCh09G005870	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh09G005870.1	CmoCh09G005870.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G005870.1.exon.3	CmoCh09G005870.1.exon.3	exon
CmoCh09G005870.1.exon.2	CmoCh09G005870.1.exon.2	exon
CmoCh09G005870.1.exon.1	CmoCh09G005870.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G005870.1.five_prime_UTR.1	CmoCh09G005870.1.five_prime_UTR.1	five_prime_UTR
CmoCh09G005870.1.five_prime_UTR.2	CmoCh09G005870.1.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G005870.1.CDS.1	CmoCh09G005870.1.CDS.1	CDS
CmoCh09G005870.1.CDS.2	CmoCh09G005870.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 7.7E-27coord: 3..23 score: 7.7E-27coord: 23..38 score: 7.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 score: 2.3
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 1.8
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 29
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..66 score: 2.49
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..66 score: 6.6
None	No IPR available	PANTHER	PTHR11945:SF147	AGAMOUS-LIKE MADS-BOX PROTEIN AGL16-RELATED	coord: 2..66 score: 6.6