CmoCh09G005840 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G005840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranscription initiation factor IIA subunit 2
LocationCmo_Chr09 : 2871408 .. 2872759 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGGTACAGTCAAAGCTGTTTGAAGATTTTATATTTTTTTGGATTTGTGTACGGAATTAAGGTTTAAGGTCTTGTTTGATTTAATTTCCTTCCACTTTTGGCTTTTGCAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGTATCCTTTTTTTCTTTTTTCTGGCTTATGAATTTGGCGAATCCTTTAATGCAGAGATTTATGTTGCTAAGTAAAGTCAACATTATAAACTTGAAACGTGATTTAATAACTGATAAGAGGAATTGGTTGTGTCTGCCTGTTCTGAGATTGCTCTGTTTGTGCTGTAGTGCACGTCTAGCCTTGAGCCAAATTGTTATGTCGGCAACACATCCATATGTCGAATGTGTAGTAGAATATTTTTCCGTGGTCTTTGGTTTCATATACAAATGCACAGCATACAAACATTTGTATTTGAAACGTGGAAGTTTCGTTGGTGGAACTTTTCATTAGGTTACTTGTGTTCATTCCATTCCTTGTTTTGTTTTCCCCTGATTCTTGAAACGTTTTCAGTATAAAATATTGCACATTGAATAAGTCTCTCTGGATTGAACTTCGTTACTTTGTGTTTTTGGAATCTGGCGATAAAGTAATCGATGTCATTAGGGATATGGCCTTGCTACAATATCAGGTTCCACAATGAGTCTTAACGACTATTCAATCGGAAGGATGTCGATTTTCTCATGATACTCGGTTGAAAGTTGATAGTGCATAGATTATATGATAAGTTTTCTTTAAAAGAAATGAAGAATTTACAATCACACAGCAATATTTAAGGTGTTATATAGTCATCGGGCCTGGCATTCTTTTAGATCTTCCCAGCCATTTCTTTTGATTCTTTCGTTCATAACACCAATCAATTTGTTTTTGCCAAGTGAATGTATCTGATAACGCCCACACCAATCACACCTATTCTGTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTTGAAGATGAAATTTGCATAATTATTTGATGATGGTAGAAGGAAATAGTCATGGTGACGAAATGGCCATCCGGGCAGTGTTGCGAGTTGGAAGCGATTCAAACATGATTCTGTAA

mRNA sequence

ATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATAAGGAAATAGTCATGGTGACGAAATGGCCATCCGGGCAGTGTTGCGAGTTGGAAGCGATTCAAACATGATTCTGTAA

Coding sequence (CDS)

ATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATAA
Homology
[Close]
BLAST of CmoCh09G005840 vs. Swiss-Prot
Match: T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 4.7e-45
Identity = 89/98 (90.82%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. Swiss-Prot
Match: T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.9e-44
Identity = 86/98 (87.76%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. Swiss-Prot
Match: T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 177.2 bits (448), Expect = 8.9e-44
Identity = 86/98 (87.76%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. Swiss-Prot
Match: T2AG_SCHPO (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=toa2 PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-25
Identity = 51/95 (53.68%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 4  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 63
          +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL
Sbjct: 5  YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64 HTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
           TYRFCD VWTFI+++ +F+ ++   T  +I+IVA
Sbjct: 65 DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVA 99

[Close]
BLAST of CmoCh09G005840 vs. Swiss-Prot
Match: T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-23
Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 1 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K + KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVA 99
           HTYRFCD+VWTFIL++A FK E ++   V R+KIVA
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVA 103

[Close]
BLAST of CmoCh09G005840 vs. TrEMBL
Match: M5XZ20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012329mg PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.3e-46
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 68  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 127

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVA
Sbjct: 128 GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVA 165

[Close]
BLAST of CmoCh09G005840 vs. TrEMBL
Match: A0A151TZ84_CAJCA (Transcription initiation factor IIA subunit 2 OS=Cajanus cajan GN=KK1_004896 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.7e-46
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQ+A FKNEDSQETVGR+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQNALFKNEDSQETVGRVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. TrEMBL
Match: A0A0S3RM59_PHAAN (Transcription initiation factor IIA subunit 2 OS=Vigna angularis var. angularis GN=Vigan.03G147700 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.7e-46
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. TrEMBL
Match: A0A0B2QX53_GLYSO (Transcription initiation factor IIA subunit 2 OS=Glycine soja GN=glysoja_019479 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.7e-46
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. TrEMBL
Match: V7B6T1_PHAVU (Transcription initiation factor IIA subunit 2 OS=Phaseolus vulgaris GN=PHAVU_008G183300g PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.7e-46
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. TAIR10
Match: AT4G24440.1 (AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S))

HSP 1 Score: 181.4 bits (459), Expect = 2.7e-46
Identity = 89/98 (90.82%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. NCBI nr
Match: gi|596288514|ref|XP_007225949.1| (hypothetical protein PRUPE_ppa012329mg [Prunus persica])

HSP 1 Score: 192.6 bits (488), Expect = 3.3e-46
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 68  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 127

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVA
Sbjct: 128 GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVA 165

[Close]
BLAST of CmoCh09G005840 vs. NCBI nr
Match: gi|645224670|ref|XP_008219223.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Prunus mume])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQDA FKNEDS ETVGR+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKNEDSSETVGRVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. NCBI nr
Match: gi|1012361125|gb|KYP72308.1| (Transcription initiation factor IIA subunit 2 [Cajanus cajan])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQ+A FKNEDSQETVGR+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQNALFKNEDSQETVGRVKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. NCBI nr
Match: gi|659081192|ref|XP_008441202.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV+IK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVA 98

[Close]
BLAST of CmoCh09G005840 vs. NCBI nr
Match: gi|356500773|ref|XP_003519205.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Glycine max])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA 99
          GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVA
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVA 98

The following BLAST results are available for this feature:
BLAST of CmoCh09G005840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
T2AG_ARATH4.7e-4590.82Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S... [more]
T2AG_ORYSJ8.9e-4487.76Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN... [more]
T2AG_ORYSI8.9e-4487.76Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=T... [more]
T2AG_SCHPO2.4e-2553.68Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra... [more]
T2AG_DICDI8.7e-2355.21Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum GN=gtf... [more]
BLAST of CmoCh09G005840 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XZ20_PRUPE2.3e-4696.94Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012329mg PE=4 SV=1[more]
A0A151TZ84_CAJCA8.7e-4695.92Transcription initiation factor IIA subunit 2 OS=Cajanus cajan GN=KK1_004896 PE=... [more]
A0A0S3RM59_PHAAN8.7e-4695.92Transcription initiation factor IIA subunit 2 OS=Vigna angularis var. angularis ... [more]
A0A0B2QX53_GLYSO8.7e-4695.92Transcription initiation factor IIA subunit 2 OS=Glycine soja GN=glysoja_019479 ... [more]
V7B6T1_PHAVU8.7e-4695.92Transcription initiation factor IIA subunit 2 OS=Phaseolus vulgaris GN=PHAVU_008... [more]
BLAST of CmoCh09G005840 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24440.12.7e-4690.82 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA... [more]
BLAST of CmoCh09G005840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|596288514|ref|XP_007225949.1|3.3e-4696.94hypothetical protein PRUPE_ppa012329mg [Prunus persica][more]
gi|645224670|ref|XP_008219223.1|1.2e-4595.92PREDICTED: transcription initiation factor IIA subunit 2 [Prunus mume][more]
gi|1012361125|gb|KYP72308.1|1.2e-4595.92Transcription initiation factor IIA subunit 2 [Cajanus cajan][more]
gi|659081192|ref|XP_008441202.1|1.2e-4595.92PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo][more]
gi|356500773|ref|XP_003519205.1|1.2e-4595.92PREDICTED: transcription initiation factor IIA subunit 2 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003194TFIIA_gsu
IPR009083TFIIA_a-hlx
IPR009088TFIIA_b-brl
IPR015871TFIIA_gsu_C
IPR015872TFIIA_gsu_N
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005840 ribosome
cellular_component GO:0005672 transcription factor TFIIA complex
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G005840.1CmoCh09G005840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003194Transcription initiation factor IIA, gamma subunitPIRPIRSF009415TFIIA_gamma_humcoord: 1..98
score: 6.9
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 1..98
score: 6.0
IPR009083Transcription factor IIA, helicalunknownSSF47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 4..54
score: 1.1
IPR009088Transcription factor IIA, beta-barrelGENE3DG3DSA:2.30.18.10coord: 55..98
score: 2.5
IPR009088Transcription factor IIA, beta-barrelunknownSSF50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 52..98
score: 3.4
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 53..98
score: 1.0
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPRODOMPD009224coord: 1..50
score: 4.0
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalGENE3DG3DSA:1.10.287.190coord: 1..54
score: 1.8
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 4..49
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh09G005840Cla023070Watermelon (97103) v1cmowmB028
CmoCh09G005840ClCG11G014700Watermelon (Charleston Gray)cmowcgB007
CmoCh09G005840Lsi04G022880Bottle gourd (USVL1VR-Ls)cmolsiB010
CmoCh09G005840Cp4.1LG06g04050Cucurbita pepo (Zucchini)cmocpeB034
CmoCh09G005840Cp4.1LG02g03840Cucurbita pepo (Zucchini)cmocpeB022
CmoCh09G005840Cla97C11G220690Watermelon (97103) v2cmowmbB007
CmoCh09G005840Bhi09G002127Wax gourdcmowgoB0020
CmoCh09G005840Carg03011Silver-seed gourdcarcmoB0865
CmoCh09G005840Carg00421Silver-seed gourdcarcmoB0908
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh09G005840CmoCh01G015250Cucurbita moschata (Rifu)cmocmoB019
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G005840Watermelon (97103) v2cmowmbB003
CmoCh09G005840Watermelon (97103) v2cmowmbB025
CmoCh09G005840Watermelon (97103) v2cmowmbB027
CmoCh09G005840Watermelon (97103) v2cmowmbB034
CmoCh09G005840Wax gourdcmowgoB0014
CmoCh09G005840Cucurbita moschata (Rifu)cmocmoB031
CmoCh09G005840Cucurbita moschata (Rifu)cmocmoB005
CmoCh09G005840Cucumber (Gy14) v1cgycmoB0852
CmoCh09G005840Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G005840Cucurbita maxima (Rimu)cmacmoB437
CmoCh09G005840Cucurbita maxima (Rimu)cmacmoB753
CmoCh09G005840Wild cucumber (PI 183967)cmocpiB005
CmoCh09G005840Cucumber (Chinese Long) v2cmocuB005
CmoCh09G005840Melon (DHL92) v3.5.1cmomeB023
CmoCh09G005840Melon (DHL92) v3.5.1cmomeB038
CmoCh09G005840Cucurbita pepo (Zucchini)cmocpeB005
CmoCh09G005840Cucurbita pepo (Zucchini)cmocpeB039
CmoCh09G005840Bottle gourd (USVL1VR-Ls)cmolsiB002
CmoCh09G005840Bottle gourd (USVL1VR-Ls)cmolsiB021
CmoCh09G005840Cucumber (Gy14) v2cgybcmoB141
CmoCh09G005840Cucumber (Gy14) v2cgybcmoB136
CmoCh09G005840Cucumber (Gy14) v2cgybcmoB137
CmoCh09G005840Cucumber (Gy14) v2cgybcmoB258
CmoCh09G005840Cucumber (Gy14) v2cgybcmoB685
CmoCh09G005840Melon (DHL92) v3.6.1cmomedB018
CmoCh09G005840Melon (DHL92) v3.6.1cmomedB022
CmoCh09G005840Melon (DHL92) v3.6.1cmomedB040
CmoCh09G005840Silver-seed gourdcarcmoB0075
CmoCh09G005840Silver-seed gourdcarcmoB0540
CmoCh09G005840Silver-seed gourdcarcmoB1110
CmoCh09G005840Cucumber (Chinese Long) v3cmocucB0002
CmoCh09G005840Cucumber (Chinese Long) v3cmocucB0003
CmoCh09G005840Cucumber (Chinese Long) v3cmocucB0009
CmoCh09G005840Cucumber (Chinese Long) v3cmocucB0029