Carg03011 (gene) Silver-seed gourd

Overview
NameCarg03011
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription initiation factor IIA subunit 2
LocationCucurbita_argyrosperma_scaffold_008 : 1335082 .. 1336893 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTTCTTCGCTCGCGAAAAGCTTTGGAGCCATCGTTGTCCCGGTTAGAATCAAGAAACGAGAAGAATCACATACTTACCAACAATCTGTAACTACAATTCCTTGCTTGTACTCGCTCTTTAATTTTATTTCGTTCCTTTTAGAATTGATCTCTCGCTTTTATTTCGAAGATTTTGCCAGCTTTCTCGAATTCTGATGCTATGTTTCAAATTTTTCTGAAGATTTTGTCAATTCTGGATGTGTATTTTTTGACTAAATTTGATATCTTAGCTAAAGAGCTTCCATATTTTTCAGATCTTGTTTTCTGAAGAAGAATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGGTACAGTCAAAGCTGTTTGAAGATTTTATATATTTTTGGATTTGTGTACGGAATTAAGGTTTAAGGTCTTGTTTGATTTAATTTCCTTCCACTTTTGGCTTTTGCAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGTATCCTTTTTTTCTTTTTTCTGGCTTATGAATTTGGCGAATCTTTTAATGCAGAGATTTATGTTGCTAAGTAAAGTCAACATTATAAACTTGAAACGTGATTTAATAACTGATGAGAGGAATTGGTTGTGTCTGCCTGTTCTGAGATTGCTCTGTTTGTGCTGTAGTGCACGTCTAGCCTTGAGCCAAATTGTTATGTCGGCAACACATCCATATGTCGAATGTGTAGTAGAATATTTTTCCGTGGTCTTTGGTTTCATATACAAATGCACAGCATACAAACATTTGTATTTGAAACGTGGAAGTTTCGTTGGTGGAACTTTTCATTAGGTTACTTGTGTTCATTCCATTCCTTGTTTTGTTTTCCCCTGATTCTTGAAACGTTTTCAGTATAAAATATTGCACATTGAATAAGTCTCTCTGGACTGAACTTCGTTACTTTGTGTTTTTGGAATCTGGCGATAAAGTAATCGATGTCATTAGGGATATGGCCTTGCTACAATATCAGGTTCCACAATGAGTCTTAACGACTATTCAATCGGAAGGATGTCGATTTTCTCATGATACTCGGTTGAAAGTTGACAGTGCATAGATTATATGATAAGTTTTCTTTAAAAGAAATGAAGAATTTACAATCACACAGCAATCTTTAAGGTGTTATATAGTCATCGGGCCTGGCGTTCTTTTAGATCTTCCCAGCCATTTTTTTTGACTCTTTCGTTCATAACACCAATCAATTTGTTTTTGCCAAGTGAATGTATTTCATAACGCCCACACCAATCACACCTATTCTGTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTTGATGATGAAATTTGCATAATTATTTGATGATGGTAGAAGGAAATAGTCATGGTGACGAAATGGCCATCCGGGCAGTGTTGCGAGTTGGAAGCGATTCAAACATGATTCTGTAAAGTCATCGACCCGAACAGCTAAAAGTTACTTTCACGCCCATTGACGATACATTTGACTGTAATTGGCATTTAAAGCTGATTACATAACAATTATACAGCCCTTCTAGTGTAATGATAATAAAAACATGATATCTATTTTCATATT

mRNA sequence

AAATTTCTTCGCTCGCGAAAAGCTTTGGAGCCATCGTTGTCCCGGTTAGAATCAAGAAACGAGAAGAATCACATACTTACCAACAATCTATCTTGTTTTCTGAAGAAGAATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTTGATGATGAAATTTGCATAATTATTTGATGATGGTAGAAGGAAATAGTCATGGTGACGAAATGGCCATCCGGGCAGTGTTGCGAGTTGGAAGCGATTCAAACATGATTCTGTAAAGTCATCGACCCGAACAGCTAAAAGTTACTTTCACGCCCATTGACGATACATTTGACTGTAATTGGCATTTAAAGCTGATTACATAACAATTATACAGCCCTTCTAGTGTAATGATAATAAAAACATGATATCTATTTTCATATT

Coding sequence (CDS)

ATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Homology
[Close]
BLAST of Carg03011 vs. NCBI nr
Match: XP_022936677.1 (transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022975864.1 transcription initiation factor IIA subunit 2 [Cucurbita maxima] >XP_023536591.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >XP_023536592.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 6.4e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 1.4e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. NCBI nr
Match: XP_022133819.1 (transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133827.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133836.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133845.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133853.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133862.1 transcription initiation factor IIA subunit 2 [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 7.1e-51
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of Carg03011 vs. NCBI nr
Match: XP_020411465.1 (transcription initiation factor IIA subunit 2 [Prunus persica] >ONI35447.1 hypothetical protein PRUPE_1G536300 [Prunus persica])

HSP 1 Score: 208.8 bits (530), Expect = 9.3e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. NCBI nr
Match: XP_008219223.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Prunus mume])

HSP 1 Score: 206.8 bits (525), Expect = 3.5e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDS ETVGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSSETVGRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. TAIR10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S))

HSP 1 Score: 197.6 bits (501), Expect = 3.9e-51
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. Swiss-Prot
Match: sp|Q39236|T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 7.0e-50
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. Swiss-Prot
Match: sp|A2XZI2|T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-48
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of Carg03011 vs. Swiss-Prot
Match: sp|Q0DLD3|T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-48
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of Carg03011 vs. Swiss-Prot
Match: sp|O74948|T2AG_SCHPO (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-26
Identity = 52/99 (52.53%), Postives = 79/99 (79.80%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSK 103
            TYRFCD VWTFI+++ +F+ ++   T  +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]
BLAST of Carg03011 vs. Swiss-Prot
Match: sp|Q54ND1|T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-24
Identity = 55/101 (54.46%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K + KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVACDSKL 104
           HTYRFCD+VWTFIL++A FK E ++   V R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108

[Close]
BLAST of Carg03011 vs. TrEMBL
Match: tr|A0A251RHK1|A0A251RHK1_PRUPE (Transcription initiation factor IIA subunit 2 OS=Prunus persica OX=3760 GN=PRUPE_1G536300 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.1e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. TrEMBL
Match: tr|M5XZ20|M5XZ20_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012329mg PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.1e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 68  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 127

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 128 GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 173

[Close]
BLAST of Carg03011 vs. TrEMBL
Match: tr|I1JH19|I1JH19_SOYBN (Transcription initiation factor IIA subunit 2 OS=Glycine max OX=3847 GN=100814623 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. TrEMBL
Match: tr|V7B6T1|V7B6T1_PHAVU (Transcription initiation factor IIA subunit 2 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G183300g PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg03011 vs. TrEMBL
Match: tr|A0A1S3VVM5|A0A1S3VVM5_VIGRR (Transcription initiation factor IIA subunit 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106778943 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:
BLAST of Carg03011 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022936677.16.4e-52100.00transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678... [more]
XP_022941425.11.4e-5199.06transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229... [more]
XP_022133819.17.1e-5198.11transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_02213382... [more]
XP_020411465.19.3e-5197.17transcription initiation factor IIA subunit 2 [Prunus persica] >ONI35447.1 hypot... [more]
XP_008219223.13.5e-5096.23PREDICTED: transcription initiation factor IIA subunit 2 [Prunus mume][more]
BLAST of Carg03011 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24440.13.9e-5191.51transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)[more]
BLAST of Carg03011 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q39236|T2AG_ARATH7.0e-5091.51Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|A2XZI2|T2AG_ORYSI3.8e-4887.74Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3... [more]
sp|Q0DLD3|T2AG_ORYSJ3.8e-4887.74Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX... [more]
sp|O74948|T2AG_SCHPO1.9e-2652.53Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra... [more]
sp|Q54ND1|T2AG_DICDI1.0e-2454.46Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=446... [more]
BLAST of Carg03011 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A251RHK1|A0A251RHK1_PRUPE6.1e-5197.17Transcription initiation factor IIA subunit 2 OS=Prunus persica OX=3760 GN=PRUPE... [more]
tr|M5XZ20|M5XZ20_PRUPE6.1e-5197.17Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012329mg PE=4 SV=1[more]
tr|I1JH19|I1JH19_SOYBN2.3e-5096.23Transcription initiation factor IIA subunit 2 OS=Glycine max OX=3847 GN=10081462... [more]
tr|V7B6T1|V7B6T1_PHAVU2.3e-5096.23Transcription initiation factor IIA subunit 2 OS=Phaseolus vulgaris OX=3885 GN=P... [more]
tr|A0A1S3VVM5|A0A1S3VVM5_VIGRR2.3e-5096.23Transcription initiation factor IIA subunit 2 OS=Vigna radiata var. radiata OX=3... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: INTERPRO
TermDefinition
IPR015871TFIIA_gsu_C
IPR009083TFIIA_a-hlx
IPR015872TFIIA_gsu_N
IPR009088TFIIA_b-brl
IPR003194TFIIA_gsu
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005672 transcription factor TFIIA complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03011-RACarg03011-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003194Transcription initiation factor IIA, gamma subunitPIRSFPIRSF009415TFIIA_gamma_humcoord: 1..106
e-value: 2.6E-49
score: 163.9
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 2..104
IPR009088Transcription factor IIA, beta-barrelGENE3DG3DSA:2.30.18.10coord: 55..106
e-value: 4.0E-25
score: 89.3
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILYSSF50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 52..102
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 4..49
e-value: 1.7E-23
score: 82.2
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPRODOMPD009224coord: 1..50
e-value: 4.0E-22
score: 253.0
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalCDDcd10145TFIIA_gamma_Ncoord: 4..49
e-value: 2.24514E-21
score: 79.9172
IPR009083Transcription factor IIA, helicalGENE3DG3DSA:1.10.287.190coord: 3..54
e-value: 1.4E-23
score: 84.3
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 53..101
e-value: 1.3E-24
score: 85.9
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalCDDcd10014TFIIA_gamma_Ccoord: 57..102
e-value: 1.1484E-22
score: 83.4511
NoneNo IPR availablePANTHERPTHR10966:SF0TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 2..104
NoneNo IPR availableSUPERFAMILYSSF47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 4..54

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03011Cla023070Watermelon (97103) v1carwmB0634
Carg03011ClCG11G014700Watermelon (Charleston Gray)carwcgB0610
Carg03011CmoCh09G005840Cucurbita moschata (Rifu)carcmoB0865
Carg03011Lsi04G022880Bottle gourd (USVL1VR-Ls)carlsiB575
Carg03011Cp4.1LG06g04050Cucurbita pepo (Zucchini)carcpeB0906
Carg03011Cp4.1LG02g03840Cucurbita pepo (Zucchini)carcpeB0899
Carg03011Cla97C11G220690Watermelon (97103) v2carwmbB0656
Carg03011Bhi09G002127Wax gourdcarwgoB0752
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03011Carg00421Silver-seed gourdcarcarB554
The following block(s) are covering this gene:
GeneOrganismBlock
Carg03011Silver-seed gourdcarcarB066
Carg03011Silver-seed gourdcarcarB424
Carg03011Silver-seed gourdcarcarB557
Carg03011Cucumber (Gy14) v2carcgybB0629
Carg03011Cucumber (Gy14) v2carcgybB0632
Carg03011Cucumber (Gy14) v1carcgyB0706
Carg03011Cucumber (Gy14) v1carcgyB0707
Carg03011Cucumber (Gy14) v1carcgyB0712
Carg03011Cucurbita maxima (Rimu)carcmaB0889
Carg03011Cucurbita maxima (Rimu)carcmaB0892
Carg03011Cucurbita maxima (Rimu)carcmaB0897
Carg03011Cucurbita maxima (Rimu)carcmaB0900
Carg03011Cucurbita moschata (Rifu)carcmoB0873
Carg03011Cucurbita moschata (Rifu)carcmoB0868
Carg03011Cucurbita moschata (Rifu)carcmoB0877
Carg03011Cucurbita pepo (Zucchini)carcpeB0894
Carg03011Cucurbita pepo (Zucchini)carcpeB0907
Carg03011Wild cucumber (PI 183967)carcpiB0665
Carg03011Wild cucumber (PI 183967)carcpiB0662
Carg03011Cucumber (Chinese Long) v2carcuB0652
Carg03011Cucumber (Chinese Long) v2carcuB0655
Carg03011Cucumber (Chinese Long) v2carcuB0659
Carg03011Cucumber (Chinese Long) v3carcucB0663
Carg03011Cucumber (Chinese Long) v3carcucB0666
Carg03011Cucumber (Chinese Long) v3carcucB0670
Carg03011Bottle gourd (USVL1VR-Ls)carlsiB574
Carg03011Bottle gourd (USVL1VR-Ls)carlsiB579
Carg03011Melon (DHL92) v3.5.1carmeB0630
Carg03011Melon (DHL92) v3.5.1carmeB0631
Carg03011Melon (DHL92) v3.5.1carmeB0636
Carg03011Melon (DHL92) v3.6.1carmedB0639
Carg03011Melon (DHL92) v3.6.1carmedB0640
Carg03011Melon (DHL92) v3.6.1carmedB0645
Carg03011Watermelon (Charleston Gray)carwcgB0617
Carg03011Watermelon (97103) v1carwmB0627
Carg03011Watermelon (97103) v1carwmB0633
Carg03011Watermelon (97103) v2carwmbB0655
Carg03011Watermelon (97103) v2carwmbB0664
Carg03011Wax gourdcarwgoB0751