Carg00421 (gene) Silver-seed gourd

Overview
NameCarg00421
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription initiation factor IIA subunit 2
LocationCucurbita_argyrosperma_scaffold_001 : 2340455 .. 2342147 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTTCTTCGCTCGCGAAAAGCATTTGGAGCTAACGTTAACCCAGTTAGAATCAAAGAAACCAGAAGCATCACAAACTCACTTTCAATCCGTAGCTACAATTCGTTGCTCTTGTACTCTTTCTCTTTATTATTATTTTCTCATTCCTTTTCGAATTGATTTCTCGCTTTAATTTCGAAGATTTTGCCTGCTTTCTCGAATTTTGACGCTATGTTTCAAATTTTCATTTAGTTTTGTCAATTACGGATGTGCTCTGTTGAACTAAATTTGATATCTTAGCCGAAGAACTTCCATATGTTGCAGATCTTGTTTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGTTCTTGTGCAGTTCGATAAGGTATAGTTAAAGCTGGTTCAGAGATGTTTTTATGTGTATATTTTGGATTCGTGTTCGAAATTGAGGTCTTGTTTGATTTAATTTCGTAGCGCTTTTGGTTTTTTGCAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTGTCAAGGTATGTTTGTTCGGCTTATGAATTTGATTGCATCTTTGAATGCCAGAGATTTATGCTGCGAAGTAAAGACATTATAAACTTGAAACGTGTTTTTACTAAGAGGAATTAGTTGTGTTTGCCTGTTCTGAGATACTTCTGTTTGTGCTCTATTGCACGTCAAGCCTTAACATGAATGTATAGTACAATTTTTTCCCCATGATCTTTTGGTTGCCCGAAGTGAATGAAGAACCACGATAAAGAAAACATATTACCTACGGCATAGAAACATTTGCATTCGAAAGTTCGAAGTTTAGATTGTGGAACATTTGATCTAATTCTAAATGGATTAGATTACTTCATTGATTCTTCAAGCGTTTTCCAGCATAAAATATTGCAGCTTGAATAAGTTTCTCTGGAATAAACTTGGTAATTATTTGTACATTTGAATCTGGGGATAAAGTAATCGATGCAATTAGAGATTTAAGCCGGTGCATCAATTGCTTCTACAATCAGTCTTTCCTTCAAGTTATATATTCAATCCAATGGCTGTTGGATTTTCTCATGATACTCTTGAAAGTTCGTCGTGATTGTATGAGAACCATGGATGAGATCACAATCACGTCAATATTTGAGGAGTTATATAATTAACACTTTGGTTGATTTCTGAGCCTCTTTGTCCTATTGTATTGCAACAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGGACGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTGTTCCAGATACCACTTTATTAGATGAAGTTTCCATTATTATTTGCTGATGATTGAGGGAAATAGTCACGATGAGAGGAGATGGCCATCAAGGCTGTGCTTCATGTTGCAAGTTTGGAAAAGATTCAAATGTGATTCTGTAAAGCTACTTTCACGCACATTAACATTACCTTTGATCTTAATTGGCTTCCAAAGCCAGGTTCATGACAATTATACAACCCTTCTAGTTGAATGATAATAAAACACGAGATATCTGTTTTAACATT

mRNA sequence

AAATTTCTTCGCTCGCGAAAAGCATTTGGAGCTAACGTTAACCCAGTTAGAATCAAAGAAACCAGAAGCATCACAAACTCACTTTCAATCCATCTTGTTTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGTTCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTGTCAAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGGACGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTGATGAAGTTTCCATTATTATTTGCTGATGATTGAGGGAAATAGTCACGATGAGAGGAGATGGCCATCAAGGCTGTGCTTCATGTTGCAAGTTTGGAAAAGATTCAAATGTGATTCTGTAAAGCTACTTTCACGCACATTAACATTACCTTTGATCTTAATTGGCTTCCAAAGCCAGGTTCATGACAATTATACAACCCTTCTAGTTGAATGATAATAAAACACGAGATATCTGTTTTAACATT

Coding sequence (CDS)

ATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGTTCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTGTCAAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGGACGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Homology
[Close]
BLAST of Carg00421 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 6.4e-52
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of Carg00421 vs. NCBI nr
Match: XP_022936677.1 (transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022975864.1 transcription initiation factor IIA subunit 2 [Cucurbita maxima] >XP_023536591.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >XP_023536592.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of Carg00421 vs. NCBI nr
Match: XP_022133819.1 (transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133827.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133836.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133845.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133853.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133862.1 transcription initiation factor IIA subunit 2 [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 2.1e-50
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of Carg00421 vs. NCBI nr
Match: XP_020411465.1 (transcription initiation factor IIA subunit 2 [Prunus persica] >ONI35447.1 hypothetical protein PRUPE_1G536300 [Prunus persica])

HSP 1 Score: 207.2 bits (526), Expect = 2.7e-50
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg00421 vs. NCBI nr
Match: CBI19296.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 206.5 bits (524), Expect = 4.6e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 58  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 117

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNE+SQE VGR+KIVACDSKLLTQ
Sbjct: 118 GHLHTYRFCDNVWTFILQDALFKNEESQENVGRVKIVACDSKLLTQ 163

[Close]
BLAST of Carg00421 vs. TAIR10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S))

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-50
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg00421 vs. Swiss-Prot
Match: sp|Q39236|T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 2.0e-49
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg00421 vs. Swiss-Prot
Match: sp|A2XZI2|T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-47
Identity = 91/106 (85.85%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of Carg00421 vs. Swiss-Prot
Match: sp|Q0DLD3|T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-47
Identity = 91/106 (85.85%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of Carg00421 vs. Swiss-Prot
Match: sp|O74948|T2AG_SCHPO (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 8.3e-27
Identity = 53/99 (53.54%), Postives = 79/99 (79.80%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSK 103
            TYRFCD VWTFI+++ +F+ ++   T  +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]
BLAST of Carg00421 vs. Swiss-Prot
Match: sp|Q54ND1|T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.6e-25
Identity = 56/101 (55.45%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVACDSKL 104
           HTYRFCD+VWTFIL++A FK E ++   V R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108

[Close]
BLAST of Carg00421 vs. TrEMBL
Match: tr|A0A251RHK1|A0A251RHK1_PRUPE (Transcription initiation factor IIA subunit 2 OS=Prunus persica OX=3760 GN=PRUPE_1G536300 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg00421 vs. TrEMBL
Match: tr|M5XZ20|M5XZ20_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012329mg PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 68  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 127

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 128 GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 173

[Close]
BLAST of Carg00421 vs. TrEMBL
Match: tr|A0A1S3B2F6|A0A1S3B2F6_CUCME (Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485407 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.1e-50
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of Carg00421 vs. TrEMBL
Match: tr|A5AJ11|A5AJ11_VITVI (Transcription initiation factor IIA subunit 2 OS=Vitis vinifera OX=29760 GN=VIT_18s0001g07830 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.1e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNE+SQE VGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEESQENVGRVKIVACDSKLLTQ 106

[Close]
BLAST of Carg00421 vs. TrEMBL
Match: tr|A0A0A0LMF8|A0A0A0LMF8_CUCSA (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G401990 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.0e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

The following BLAST results are available for this feature:
BLAST of Carg00421 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941425.16.4e-5299.06transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229... [more]
XP_022936677.11.9e-5198.11transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678... [more]
XP_022133819.12.1e-5096.23transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_02213382... [more]
XP_020411465.12.7e-5095.28transcription initiation factor IIA subunit 2 [Prunus persica] >ONI35447.1 hypot... [more]
CBI19296.34.6e-5095.28unnamed protein product, partial [Vitis vinifera][more]
BLAST of Carg00421 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24440.11.1e-5089.62transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)[more]
BLAST of Carg00421 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q39236|T2AG_ARATH2.0e-4989.62Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|A2XZI2|T2AG_ORYSI1.1e-4785.85Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3... [more]
sp|Q0DLD3|T2AG_ORYSJ1.1e-4785.85Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX... [more]
sp|O74948|T2AG_SCHPO8.3e-2753.54Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra... [more]
sp|Q54ND1|T2AG_DICDI4.6e-2555.45Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=446... [more]
BLAST of Carg00421 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A251RHK1|A0A251RHK1_PRUPE1.8e-5095.28Transcription initiation factor IIA subunit 2 OS=Prunus persica OX=3760 GN=PRUPE... [more]
tr|M5XZ20|M5XZ20_PRUPE1.8e-5095.28Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012329mg PE=4 SV=1[more]
tr|A0A1S3B2F6|A0A1S3B2F6_CUCME3.1e-5095.28Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A5AJ11|A5AJ11_VITVI3.1e-5095.28Transcription initiation factor IIA subunit 2 OS=Vitis vinifera OX=29760 GN=VIT_... [more]
tr|A0A0A0LMF8|A0A0A0LMF8_CUCSA4.0e-5096.23Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: INTERPRO
TermDefinition
IPR009083TFIIA_a-hlx
IPR015871TFIIA_gsu_C
IPR015872TFIIA_gsu_N
IPR003194TFIIA_gsu
IPR009088TFIIA_b-brl
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005672 transcription factor TFIIA complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00421-RACarg00421-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009088Transcription factor IIA, beta-barrelGENE3DG3DSA:2.30.18.10coord: 55..106
e-value: 4.4E-25
score: 89.2
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILYSSF50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 52..102
IPR003194Transcription initiation factor IIA, gamma subunitPIRSFPIRSF009415TFIIA_gamma_humcoord: 1..106
e-value: 1.8E-49
score: 164.4
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 2..104
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 4..49
e-value: 1.7E-23
score: 82.2
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPRODOMPD009224coord: 1..50
e-value: 4.0E-22
score: 253.0
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalCDDcd10145TFIIA_gamma_Ncoord: 4..49
e-value: 2.22128E-21
score: 79.9172
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 53..101
e-value: 4.1E-25
score: 87.5
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalCDDcd10014TFIIA_gamma_Ccoord: 57..102
e-value: 6.16275E-22
score: 81.5251
IPR009083Transcription factor IIA, helicalGENE3DG3DSA:1.10.287.190coord: 3..54
e-value: 1.4E-23
score: 84.3
NoneNo IPR availablePANTHERPTHR10966:SF0TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 2..104
NoneNo IPR availableSUPERFAMILYSSF47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 4..54