CmoCh09G003140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G003140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-binding protein
Location	Cmo_Chr09 : 1359626 .. 1361310 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAATCCCGAAAACCCCGCCAAGACCAAGAGTTGCATTGCAGCCGCGAAAAAACGCCCGTGAAGAGTGGAGCGGCAACGTCCCATAAGCTGCAATGGAGTTTTCACACTCCGATCCAGGCCTCTGGAGTGAAGCTCTTTCTTCTTATCCTTCTCGAATCGAAGCCTTAGGCAAGCCGAATTTGGTTTCTCTGGATGAATTTTACCGGAACGAACTCCCTCCTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTTATGCAATGGAAGCTCACTCGCGGAAAATGGAGGTGACCACTGCTCTGTTTCTCTTACTCTTCATTTAGGTTGCCTATCGATTTTATTGACAATTAGTTTACGAATTTCAGGCCGCGGCTATTGGACTTTGTTTCATCGTTGGATGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTATCTGAGCTTACTCCGCTCAAAGGCGTCGGTCCGGCTACTGCCTCGGCGGTTCTGGCCGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGTGAAATCAGGATAAATATTGATGCAATTAGATTATCAATAACCATTGATTTCTGCCATTTGAGTTTTGAAAATTTGTTACGCGCTTAGATTTCTAACTTGTGATGGTGAGGAAGTAGGCTATGGAAGCGGCTCTTGGCAACTCCAAGGATTATTCATTGAAGCAATACCTATCCTTCGCAAAAAAGTTGCAAGATAAAGCCAAGGTCTGTTAGCTATAACTCCTATCAAGCCCCTTGTTTTGTGTATCATGTGTAGAAATTAAGTTCATTTCCAGAACCCAACAAATCGAGACGCATTTCTGTTCCTATCCTTTCAGGGATCAATTTCTTCCTTTCCTTCTGTCTTCAAATTGACATTGCCCTGCTATGTTTTGAATTTCTAACGACCTTAGCTCTGCAAAGATTTGTGCCTCAAAGCCATGATTTGAGTTTAGCATTCTGAAATTGAAGTGGTGTTTCAAACTGAGTTTAGAAAATTTGAGTGCATAATATGCAACCATAAGTTAAAAAAATGTAGGGTTAACATGTCTAGATCTGTATTTAGCATAAATTCTAGATTCATATATATATATATGGGTTTATATACTTTGTAAGATTAACAACGTTGGAATGTGGAATAAAAGAAGGCACGAGCTATACAAGCTCAGCCTAAAGTCAATCGTTCTAATTATTCAAGGCGGTTGCCTAATTCAACTGTTTCTTTAAGGATGATGATCATTTGCAGGAATTAAGCTCAGAAGGACAAATTTTCACGCCATCTGATGTAGAGAGGGCTTTGTGGAGTACGGCAATAGGGGAAAAGGTGAAGGGTTCGCAATCACAATTAGGTTCCAAGAATGGAGGCAAAACAGGCTCCAAAAGAAAGAGGAAAACTTGATTTCAGCTGGTCCAAGTGAAGGAGCATGAGGTTCTCGCGTCCCCCTTTTCTCTTTAGTTGGGGCGCTGCCTAACAGCTCATTTATCAAACTTGCTCTTCTTCCATAGATTTGGGACCAGTTTCAAGTGCTTATTTAAAACTTCTTTACAAATATTTTACTTTTGAATGTAAATTTGAGGACTTTTGACATGTTTGGATTGATGTTCTAATGCTTAATGAG

mRNA sequence

TATGAATCCCGAAAACCCCGCCAAGACCAAGAGTTGCATTGCAGCCGCGAAAAAACGCCCGTGAAGAGTGGAGCGGCAACGTCCCATAAGCTGCAATGGAGTTTTCACACTCCGATCCAGGCCTCTGGAGTGAAGCTCTTTCTTCTTATCCTTCTCGAATCGAAGCCTTAGGCAAGCCGAATTTGGTTTCTCTGGATGAATTTTACCGGAACGAACTCCCTCCTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTTATGCAATGGAAGCTCACTCGCGGAAAATGGAGGCCGCGGCTATTGGACTTTGTTTCATCGTTGGATGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTATCTGAGCTTACTCCGCTCAAAGGCGTCGGTCCGGCTACTGCCTCGGCGGTTCTGGCCGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGCTATGGAAGCGGCTCTTGGCAACTCCAAGGATTATTCATTGAAGCAATACCTATCCTTCGCAAAAAAGTTGCAAGATAAAGCCAAGGAATTAAGCTCAGAAGGACAAATTTTCACGCCATCTGATGTAGAGAGGGCTTTGTGGAGTACGGCAATAGGGGAAAAGGTGAAGGGTTCGCAATCACAATTAGGTTCCAAGAATGGAGGCAAAACAGGCTCCAAAAGAAAGAGGAAAACTTGATTTCAGCTGGTCCAAGTGAAGGAGCATGAGGTTCTCGCGTCCCCCTTTTCTCTTTAGTTGGGGCGCTGCCTAACAGCTCATTTATCAAACTTGCTCTTCTTCCATAGATTTGGGACCAGTTTCAAGTGCTTATTTAAAACTTCTTTACAAATATTTTACTTTTGAATGTAAATTTGAGGACTTTTGACATGTTTGGATTGATGTTCTAATGCTTAATGAG

Coding sequence (CDS)

ATGGAGTTTTCACACTCCGATCCAGGCCTCTGGAGTGAAGCTCTTTCTTCTTATCCTTCTCGAATCGAAGCCTTAGGCAAGCCGAATTTGGTTTCTCTGGATGAATTTTACCGGAACGAACTCCCTCCTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTTATGCAATGGAAGCTCACTCGCGGAAAATGGAGGCCGCGGCTATTGGACTTTGTTTCATCGTTGGATGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTATCTGAGCTTACTCCGCTCAAAGGCGTCGGTCCGGCTACTGCCTCGGCGGTTCTGGCCGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGCTATGGAAGCGGCTCTTGGCAACTCCAAGGATTATTCATTGAAGCAATACCTATCCTTCGCAAAAAAGTTGCAAGATAAAGCCAAGGAATTAAGCTCAGAAGGACAAATTTTCACGCCATCTGATGTAGAGAGGGCTTTGTGGAGTACGGCAATAGGGGAAAAGGTGAAGGGTTCGCAATCACAATTAGGTTCCAAGAATGGAGGCAAAACAGGCTCCAAAAGAAAGAGGAAAACTTGA

Homology

[Close]

BLAST of CmoCh09G003140 vs. TrEMBL
Match: A0A0A0L3W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645280 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 4.2e-101
Identity = 195/217 (89.86%), Postives = 204/217 (94.01%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           MEFS SDP LW EALS+Y S+IEALGKPNLVSLD+FYRNELP +LHKRNPSPYITTSELS
Sbjct: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYL FA KL+ KAKELS EG+IFTPSD
Sbjct: 122 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLLFANKLEQKAKELSLEGEIFTPSD 181

Query: 181 VERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRKT 218
           VERALWS AIGEK+KGS+SQL   NGGKTG+KRKRKT
Sbjct: 182 VERALWSRAIGEKLKGSKSQLDPNNGGKTGTKRKRKT 218

[Close]

BLAST of CmoCh09G003140 vs. TrEMBL
Match: A0A061FEA1_THECC (Gb:AAF48080.1 OS=Theobroma cacao GN=TCM_034642 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.7e-84
Identity = 167/216 (77.31%), Postives = 189/216 (87.50%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           + F  +D  +W EA+SSY SRIE+L KPNLVSLDEFYRNELPPLLH+RNP+P+ITTSELS
Sbjct: 3   LHFECTDLSIWKEAISSYKSRIESLDKPNLVSLDEFYRNELPPLLHQRNPNPFITTSELS 62

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           +LMQWKLTRGKWRPRLLDFVSSLD+SLVK ASQKAFQ LPDISKAVSELT LKGVGPATA
Sbjct: 63  RLMQWKLTRGKWRPRLLDFVSSLDDSLVKSASQKAFQSLPDISKAVSELTVLKGVGPATA 122

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAP+ APFMSDEAMEAALGNSKDYSLKQYL F  K+Q K+KELSS+G  FTPSD
Sbjct: 123 SAVLAAYAPETAPFMSDEAMEAALGNSKDYSLKQYLLFVDKIQSKSKELSSKGDSFTPSD 182

Query: 181 VERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRK 217
           VERALWS+A+G K++ SQ+ L +K  G   +KRKR+
Sbjct: 183 VERALWSSAVGIKLQSSQAVLDNKMKG--SNKRKRR 216

[Close]

BLAST of CmoCh09G003140 vs. TrEMBL
Match: M5XSQ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011235mg PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.2e-82
Identity = 166/217 (76.50%), Postives = 186/217 (85.71%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           MEF  S P LW EALSSY SRI++L KPNLVSLD+FYRN LP LLH+RNPSP+ITTSELS
Sbjct: 1   MEFECSAPSLWREALSSYSSRIQSLNKPNLVSLDDFYRNALPSLLHQRNPSPFITTSELS 60

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
            LM+WKLTRGKWRPRLLDFVS+LDE++VK ASQKAFQ LPDISKA+SELT LKG+GPATA
Sbjct: 61  DLMRWKLTRGKWRPRLLDFVSALDEAVVKSASQKAFQALPDISKAISELTVLKGLGPATA 120

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAPDVAPFMSDEAM AALGNSKDY+LKQYL F  KLQ+KAKEL++EG+ FTPSD
Sbjct: 121 SAVLAAYAPDVAPFMSDEAMVAALGNSKDYTLKQYLLFVNKLQEKAKELTAEGETFTPSD 180

Query: 181 VERALWSTAIGEKVKGSQSQLGSK-NGGKTGSKRKRK 217
           VERALWS A+G K+  SQS    K +  K  +KRKRK
Sbjct: 181 VERALWSGAVGAKLPSSQSDPDLKTDKSKNPNKRKRK 217

[Close]

BLAST of CmoCh09G003140 vs. TrEMBL
Match: M5W816_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022189mg PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 8.3e-81
Identity = 157/199 (78.89%), Postives = 175/199 (87.94%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           MEF  S P LW EALSSY SRI++L KPNLVSLD+FYRN LP LLH+ NPSP+ITTSELS
Sbjct: 1   MEFECSAPSLWREALSSYSSRIQSLNKPNLVSLDDFYRNALPSLLHQGNPSPFITTSELS 60

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
            LM+WKLTRGKWRPRLLDFVS+LDE++VK ASQKAFQ LPDISKA+SELT LKG+GPATA
Sbjct: 61  DLMRWKLTRGKWRPRLLDFVSALDEAVVKSASQKAFQALPDISKAISELTVLKGLGPATA 120

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAPDVAPFMSDEAM AALGNSKDY+LKQYL F  KLQ+KAKEL++E + FTPSD
Sbjct: 121 SAVLAAYAPDVAPFMSDEAMVAALGNSKDYTLKQYLLFVNKLQEKAKELTAEWETFTPSD 180

Query: 181 VERALWSTAIGEKVKGSQS 200
           VERALWS A+G K+  SQS
Sbjct: 181 VERALWSGAVGAKLPSSQS 199

[Close]

BLAST of CmoCh09G003140 vs. TrEMBL
Match: B9R6U9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1585640 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 5.9e-79
Identity = 159/216 (73.61%), Postives = 178/216 (82.41%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           M+F  SD  LW EAL+ YP+RIE+L K NL+SLDEFYR +LP L+ KRNP+PYITT ELS
Sbjct: 1   MDFRSSDISLWKEALADYPARIESLKKSNLISLDEFYRIQLPSLIQKRNPNPYITTPELS 60

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           KLMQWKL+RGKWRPRLLD+VSSLDE +VK ASQKAFQ LPD+SKAV+ELT LKGVGPATA
Sbjct: 61  KLMQWKLSRGKWRPRLLDYVSSLDEEIVKSASQKAFQSLPDVSKAVTELTVLKGVGPATA 120

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAPDVAPFMSDEAMEAALG+SKDY+LKQYLSF  KLQ KAKELSS    FTPSD
Sbjct: 121 SAVLAAYAPDVAPFMSDEAMEAALGSSKDYTLKQYLSFVDKLQTKAKELSSNEDSFTPSD 180

Query: 181 VERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRK 217
           VE ALWS A+  K   S+  L SK   +  +KRKRK
Sbjct: 181 VETALWSYAVRAKSLASKEDLDSKTATRRDTKRKRK 216

[Close]

BLAST of CmoCh09G003140 vs. TAIR10
Match: AT3G12210.2 (AT3G12210.2 DNA binding)

HSP 1 Score: 288.9 bits (738), Expect = 2.6e-78
Identity = 149/204 (73.04%), Postives = 171/204 (83.82%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           +EF  SD G+W EALSSY SRIE+L KP LVSLD+FYR +LP LLH R+P+PY+TTSELS
Sbjct: 3   LEFKCSDVGVWKEALSSYDSRIESLNKPELVSLDQFYRIKLPCLLHDRDPNPYLTTSELS 62

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           +LM+WKL+RGKWRPRLLDFVSSLD+S+VK AS+KAF+ LPDISKAV ELT LKGVG ATA
Sbjct: 63  QLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKSLPDISKAVKELTVLKGVGAATA 122

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAPD+APFMSDEAME ALGNSKDYSLKQYL FA KLQDKAKEL  +G+   PSD
Sbjct: 123 SAVLAAYAPDIAPFMSDEAMEVALGNSKDYSLKQYLLFATKLQDKAKELKLKGEWDGPSD 182

Query: 181 VERALWSTAIGEKVKGSQSQLGSK 205
           +ERALWS  +  K +  +S  G K
Sbjct: 183 IERALWSCTVRAKSQPEKSSSGKK 206

[Close]

BLAST of CmoCh09G003140 vs. NCBI nr
Match: gi|449447089|ref|XP_004141302.1| (PREDICTED: uncharacterized protein LOC101204707 isoform X1 [Cucumis sativus])

HSP 1 Score: 375.6 bits (963), Expect = 6.0e-101
Identity = 195/217 (89.86%), Postives = 204/217 (94.01%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           MEFS SDP LW EALS+Y S+IEALGKPNLVSLD+FYRNELP +LHKRNPSPYITTSELS
Sbjct: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYL FA KL+ KAKELS EG+IFTPSD
Sbjct: 122 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLLFANKLEQKAKELSLEGEIFTPSD 181

Query: 181 VERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRKT 218
           VERALWS AIGEK+KGS+SQL   NGGKTG+KRKRKT
Sbjct: 182 VERALWSRAIGEKLKGSKSQLDPNNGGKTGTKRKRKT 218

[Close]

BLAST of CmoCh09G003140 vs. NCBI nr
Match: gi|659103680|ref|XP_008452684.1| (PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 6.0e-101
Identity = 194/217 (89.40%), Postives = 204/217 (94.01%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           M+FS+SDP LW EALSSY S+IEALGKPNLVSLD+FYRNELP +LHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SA+LAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYL FA KLQ+KAKELS EG+ FTPSD
Sbjct: 121 SAILAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLLFANKLQEKAKELSLEGETFTPSD 180

Query: 181 VERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRKT 218
           VERALWS AIGEK+KGSQSQL   NGGKTG+KRKRKT
Sbjct: 181 VERALWSRAIGEKLKGSQSQLDPNNGGKTGTKRKRKT 217

[Close]

BLAST of CmoCh09G003140 vs. NCBI nr
Match: gi|590596743|ref|XP_007018420.1| (Gb:AAF48080.1 [Theobroma cacao])

HSP 1 Score: 319.7 bits (818), Expect = 3.9e-84
Identity = 167/216 (77.31%), Postives = 189/216 (87.50%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           + F  +D  +W EA+SSY SRIE+L KPNLVSLDEFYRNELPPLLH+RNP+P+ITTSELS
Sbjct: 3   LHFECTDLSIWKEAISSYKSRIESLDKPNLVSLDEFYRNELPPLLHQRNPNPFITTSELS 62

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           +LMQWKLTRGKWRPRLLDFVSSLD+SLVK ASQKAFQ LPDISKAVSELT LKGVGPATA
Sbjct: 63  RLMQWKLTRGKWRPRLLDFVSSLDDSLVKSASQKAFQSLPDISKAVSELTVLKGVGPATA 122

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAP+ APFMSDEAMEAALGNSKDYSLKQYL F  K+Q K+KELSS+G  FTPSD
Sbjct: 123 SAVLAAYAPETAPFMSDEAMEAALGNSKDYSLKQYLLFVDKIQSKSKELSSKGDSFTPSD 182

Query: 181 VERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRK 217
           VERALWS+A+G K++ SQ+ L +K  G   +KRKR+
Sbjct: 183 VERALWSSAVGIKLQSSQAVLDNKMKG--SNKRKRR 216

[Close]

BLAST of CmoCh09G003140 vs. NCBI nr
Match: gi|1009135686|ref|XP_015885118.1| (PREDICTED: uncharacterized protein LOC107420631 [Ziziphus jujuba])

HSP 1 Score: 315.8 bits (808), Expect = 5.7e-83
Identity = 163/216 (75.46%), Postives = 183/216 (84.72%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           MEF   +  LW EA+S+Y SRIEAL KPNL SLD++YRN LPPLLH+RNP+ YITTSELS
Sbjct: 1   MEFGCCNLSLWKEAVSAYQSRIEALNKPNLASLDDYYRNHLPPLLHQRNPNSYITTSELS 60

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           KLMQWKLTRGKWRPRLLDFVS LDE+LVK AS+KAF+ LPD+SKA++ELT LKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSGLDEALVKSASEKAFRSLPDVSKAITELTVLKGVGPATA 120

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAPD+APFMSDEAMEAALGNSKDY+LKQYL F  KLQ KAKELSSEG IFTPSD
Sbjct: 121 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYTLKQYLIFVNKLQKKAKELSSEGDIFTPSD 180

Query: 181 VERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRK 217
           VERALWS+A+G K+  S     SK+     +KRKRK
Sbjct: 181 VERALWSSAVGAKLLSSNLNPDSKSNTSKNTKRKRK 216

[Close]

BLAST of CmoCh09G003140 vs. NCBI nr
Match: gi|778696518|ref|XP_011654161.1| (PREDICTED: uncharacterized protein LOC101204707 isoform X2 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 7.4e-83
Identity = 170/217 (78.34%), Postives = 178/217 (82.03%), Query Frame = 1


Query: 1   MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60
           MEFS SDP LW EALS+Y S+IEALGKPNLVSLD+FYRNELP +LHKRNPSPYITTSELS
Sbjct: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61

Query: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121

Query: 121 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSD 180
           SAVLAAYAPDVAPFMSDE                             ELS EG+IFTPSD
Sbjct: 122 SAVLAAYAPDVAPFMSDE-----------------------------ELSLEGEIFTPSD 181

Query: 181 VERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRKT 218
           VERALWS AIGEK+KGS+SQL   NGGKTG+KRKRKT
Sbjct: 182 VERALWSRAIGEKLKGSKSQLDPNNGGKTGTKRKRKT 189

The following BLAST results are available for this feature:

BLAST of CmoCh09G003140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G003140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W6_CUCSA	4.2e-101	89.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645280 PE=4 SV=1	[more]
A0A061FEA1_THECC	2.7e-84	77.31	Gb:AAF48080.1 OS=Theobroma cacao GN=TCM_034642 PE=4 SV=1	[more]
M5XSQ2_PRUPE	1.2e-82	76.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011235mg PE=4 SV=1	[more]
M5W816_PRUPE	8.3e-81	78.89	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022189mg PE=4 S...	[more]
B9R6U9_RICCO	5.9e-79	73.61	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1585640 PE=4 SV=1	[more]

BLAST of CmoCh09G003140 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12210.2	2.6e-78	73.04	DNA binding	[more]

BLAST of CmoCh09G003140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447089\|ref\|XP_004141302.1\|	6.0e-101	89.86	PREDICTED: uncharacterized protein LOC101204707 isoform X1 [Cucumis sativus]	[more]
gi\|659103680\|ref\|XP_008452684.1\|	6.0e-101	89.40	PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo]	[more]
gi\|590596743\|ref\|XP_007018420.1\|	3.9e-84	77.31	Gb:AAF48080.1 [Theobroma cacao]	[more]
gi\|1009135686\|ref\|XP_015885118.1\|	5.7e-83	75.46	PREDICTED: uncharacterized protein LOC107420631 [Ziziphus jujuba]	[more]
gi\|778696518\|ref\|XP_011654161.1\|	7.4e-83	78.34	PREDICTED: uncharacterized protein LOC101204707 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G003140.1	CmoCh09G003140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 152..172 scor
None	No IPR available	PANTHER	PTHR21521	UNCHARACTERIZED	coord: 1..190 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G003140	Cucsa.353090	Cucumber (Gy14) v1	cgycmoB0961
CmoCh09G003140	CmaCh09G003140	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G003140	Cla020904	Watermelon (97103) v1	cmowmB020
CmoCh09G003140	Csa4G645280	Cucumber (Chinese Long) v2	cmocuB011
CmoCh09G003140	MELO3C016844	Melon (DHL92) v3.5.1	cmomeB029
CmoCh09G003140	ClCG05G017610	Watermelon (Charleston Gray)	cmowcgB017
CmoCh09G003140	CSPI04G25060	Wild cucumber (PI 183967)	cmocpiB011
CmoCh09G003140	Lsi04G014520	Bottle gourd (USVL1VR-Ls)	cmolsiB012
CmoCh09G003140	Cp4.1LG06g02150	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G003140	MELO3C016844.2	Melon (DHL92) v3.6.1	cmomedB029
CmoCh09G003140	CsaV3_4G035340	Cucumber (Chinese Long) v3	cmocucB0015
CmoCh09G003140	Cla97C05G098850	Watermelon (97103) v2	cmowmbB016
CmoCh09G003140	Bhi09G002617	Wax gourd	cmowgoB0029
CmoCh09G003140	CsGy4G023360	Cucumber (Gy14) v2	cgybcmoB433
CmoCh09G003140	Carg21755	Silver-seed gourd	carcmoB0439

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G003140	Wax gourd	cmowgoB0005
CmoCh09G003140	Wax gourd	cmowgoB0015
CmoCh09G003140	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G003140	Cucurbita moschata (Rifu)	cmocmoB033
CmoCh09G003140	Cucurbita moschata (Rifu)	cmocmoB004
CmoCh09G003140	Cucurbita moschata (Rifu)	cmocmoB017
CmoCh09G003140	Cucurbita moschata (Rifu)	cmocmoB028
CmoCh09G003140	Cucurbita moschata (Rifu)	cmocmoB037
CmoCh09G003140	Cucumber (Gy14) v1	cgycmoB0214
CmoCh09G003140	Cucumber (Gy14) v1	cgycmoB1083
CmoCh09G003140	Cucurbita maxima (Rimu)	cmacmoB164
CmoCh09G003140	Cucurbita maxima (Rimu)	cmacmoB433
CmoCh09G003140	Cucurbita maxima (Rimu)	cmacmoB632
CmoCh09G003140	Cucurbita maxima (Rimu)	cmacmoB755
CmoCh09G003140	Cucurbita maxima (Rimu)	cmacmoB841
CmoCh09G003140	Wild cucumber (PI 183967)	cmocpiB002
CmoCh09G003140	Wild cucumber (PI 183967)	cmocpiB024
CmoCh09G003140	Cucumber (Chinese Long) v2	cmocuB002
CmoCh09G003140	Cucumber (Chinese Long) v2	cmocuB024
CmoCh09G003140	Melon (DHL92) v3.5.1	cmomeB012
CmoCh09G003140	Melon (DHL92) v3.5.1	cmomeB037
CmoCh09G003140	Watermelon (Charleston Gray)	cmowcgB013
CmoCh09G003140	Watermelon (Charleston Gray)	cmowcgB023
CmoCh09G003140	Watermelon (97103) v1	cmowmB007
CmoCh09G003140	Watermelon (97103) v1	cmowmB026
CmoCh09G003140	Cucurbita pepo (Zucchini)	cmocpeB006
CmoCh09G003140	Cucurbita pepo (Zucchini)	cmocpeB017
CmoCh09G003140	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G003140	Cucurbita pepo (Zucchini)	cmocpeB038
CmoCh09G003140	Bottle gourd (USVL1VR-Ls)	cmolsiB004
CmoCh09G003140	Bottle gourd (USVL1VR-Ls)	cmolsiB020
CmoCh09G003140	Cucumber (Gy14) v2	cgybcmoB138
CmoCh09G003140	Cucumber (Gy14) v2	cgybcmoB682
CmoCh09G003140	Melon (DHL92) v3.6.1	cmomedB012
CmoCh09G003140	Melon (DHL92) v3.6.1	cmomedB036
CmoCh09G003140	Silver-seed gourd	carcmoB0001
CmoCh09G003140	Silver-seed gourd	carcmoB0255
CmoCh09G003140	Silver-seed gourd	carcmoB0542
CmoCh09G003140	Silver-seed gourd	carcmoB0611
CmoCh09G003140	Silver-seed gourd	carcmoB1040
CmoCh09G003140	Cucumber (Chinese Long) v3	cmocucB0004
CmoCh09G003140	Cucumber (Chinese Long) v3	cmocucB0026
CmoCh09G003140	Watermelon (97103) v2	cmowmbB001
CmoCh09G003140	Watermelon (97103) v2	cmowmbB023