CmoCh08G010090 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G010090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 6567858 .. 6568296 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGATTCACGTTGTTGTTGTCGTGGTCGTGTTTGTTTTGCTCGTCGTGCATGCAAATGGACGTAATGTTCCAGGTTGCTAAACTATCACTAAACTCAAAAGTTTTATGTAACGAAGAAAATGCTTGTGTTGTTAATATTTTAAATACAGGTGGTGGTAGCGGGGATGGGGACGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

mRNA sequence

ATGGCGAAGATTCACGTTGTTGTTGTCGTGGTCGTGTTTGTTTTGCTCGTCGTGCATGCAAATGGACGTAATGTTCCAGGTGGTGGTAGCGGGGATGGGGACGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

Coding sequence (CDS)

ATGGCGAAGATTCACGTTGTTGTTGTCGTGGTCGTGTTTGTTTTGCTCGTCGTGCATGCAAATGGACGTAATGTTCCAGGTGGTGGTAGCGGGGATGGGGACGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA
Homology
[Close]
BLAST of CmoCh08G010090 vs. TrEMBL
Match: A0A0D2N7K2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G039500 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 1 

Query: 5   HVVVVVVVFVLLVVHA-NGRNVPG--GGSGDGDGMLDLAVAPVAGQPSSNDVDQKN--IY 64
           ++ V++ VFVLL  H  + RNVPG  G +G     +  A AP A  P  N +D K   +Y
Sbjct: 3   NLCVLLFVFVLLTAHVCHARNVPGNNGLNGSKKEQIMEANAPKAESPKGNGIDDKKHFVY 62

Query: 65  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIGGGIGFGH-------GGFGGGVGGVG 116
           GGVGGFAG+GGY G  G  P +GG+G IGK+GGIGG  G G        GG GGG+GG+G
Sbjct: 63  GGVGGFAGVGGYAGVAGGLPLVGGLGGIGKFGGIGGAAGIGGYKGIGGVGGLGGGIGGLG 122

[Close]
BLAST of CmoCh08G010090 vs. TrEMBL
Match: A0A067KEF2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12927 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 72/145 (49.66%), Postives = 82/145 (56.55%), Query Frame = 1 

Query: 9   VVVVFVLLVVHANGRNVPGGGSGDGDGMLD-----------------------------L 68
           +V + VL  VHAN RNVP   S D  G++                               
Sbjct: 6   LVFLLVLAFVHANARNVP---SSDHAGLISDQKNFIHPCPPKETTVDDNLPNQQVFVHAS 65

Query: 69  AVAPV-AGQPSSNDV-DQKN-IYGGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIG-- 116
           A APV A  P+S  + D+KN IYGGVGGFAGMGGY G  G FP LGGVG IGKYGGIG  
Sbjct: 66  ATAPVMAESPASTGLKDKKNFIYGGVGGFAGMGGYAGVVGGFPVLGGVGGIGKYGGIGGI 125

[Close]
BLAST of CmoCh08G010090 vs. TrEMBL
Match: U5GTI3_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s14200g PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 63/120 (52.50%), Postives = 76/120 (63.33%), Query Frame = 1 

Query: 8   VVVVVFVLLVVHANGRNVPGGGSGDGDGMLDL------AVAPVAGQPSSNDV-DQKN-IY 67
           VV+ V VL  VHA+ RNVP     D + ++        A AP+A  PSS  + D+KN IY
Sbjct: 12  VVIFVIVLAFVHASARNVPSDADLDSNNVVPNEEQVLHASAPMAESPSSTGLKDKKNFIY 71

Query: 68  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIG--GGIGFGHGGFGGGVGGVGGVGGG 116
           GGVGGFAGMGGY G  G  P +GG+G +GK GGIG  GGIG   G   GG+GG+GG GGG
Sbjct: 72  GGVGGFAGMGGYAGIIGGLPIIGGLGGLGKNGGIGGVGGIGGVTGPGTGGLGGLGGAGGG 131

[Close]
BLAST of CmoCh08G010090 vs. TrEMBL
Match: A0A067EY19_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047416mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 58/121 (47.93%), Postives = 76/121 (62.81%), Query Frame = 1 

Query: 9   VVVVFVLLVVHA-NGRNVPGGGSGDG------DGMLDLAVAPVAGQPSSNDVDQKN--IY 68
           V+ V VL+V+HA   R +P  G+ +       + ++  A AP A  P    +D K   IY
Sbjct: 6   VISVLVLVVLHAAEARKIPSNGALNERKSHWQETIVHAADAPKAESPRGAGLDDKKNFIY 65

Query: 69  GGVGGFAGMGGYIGGL--FPHLGGVGVIGKYGGIGGGIGFGHGGFG--GGVGGVGGVGGG 117
           GGVGGFAG+GG+ GG+   P +GG+G IGKYGGIGGG+G G GG G  GG GG+GG GG 
Sbjct: 66  GGVGGFAGVGGFAGGIGGLPLIGGLGGIGKYGGIGGGVG-GLGGLGGLGGAGGLGGAGGS 125

[Close]
BLAST of CmoCh08G010090 vs. TrEMBL
Match: W9RUU1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004621 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-07
Identity = 65/132 (49.24%), Postives = 76/132 (57.58%), Query Frame = 1 

Query: 3   KIHVVVVVVVFVLLVVHAN-GRNVPGGGSGDGD-------GMLDLAVAPVAGQPSSNDVD 62
           KI     + V  L+ +HA   RNVP   +   D         L  A +P   +  +   D
Sbjct: 2   KIKYWFSIFVLALVSIHATTARNVPSTTATTDDVNPSEETTTLLHATSPKGAESPAAVDD 61

Query: 63  QKN-IYGGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIGG--GIGFGHGGFG-----G 117
           +KN IYGGVGGFAGMGGY G  G+ P LGG+G IGK+ GIGG  GIG G GG G     G
Sbjct: 62  KKNFIYGGVGGFAGMGGYAGVAGVLPTLGGIGTIGKFSGIGGVGGIGGGVGGLGGAGGLG 121

[Close]
BLAST of CmoCh08G010090 vs. TAIR10
Match: AT1G04660.1 (AT1G04660.1 glycine-rich protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 60/130 (46.15%), Postives = 71/130 (54.62%), Query Frame = 1 

Query: 8   VVVVVFVLLVVHANGRNVPG-GGSGDGDGMLDLAVAPVAGQ-----PSSNDVDQKNIYG- 67
           VV V+  +  V A  R VPG    G   G  D    P+  +     P  +  D+K I G 
Sbjct: 7   VVCVLLAISFVCARARQVPGESDEGKTTGHDDTTTMPMHAKAADQLPPKSVGDKKCIGGV 66

Query: 68  -GVGGFAGMGGY--IGGL-FPHLGGVGVIGKYGGIGGGIGFGH----------GGFGGGV 117
            GVGGFAG+GG   +GGL  P +GG+G IGKYGGIGG  G G           GG GGGV
Sbjct: 67  AGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGFHSIGGVGGLGGVGGGV 126

[Close]
BLAST of CmoCh08G010090 vs. NCBI nr
Match: gi|659121600|ref|XP_008460740.1| (PREDICTED: WW domain-containing protein C660.06-like [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 81/116 (69.83%), Postives = 91/116 (78.45%), Query Frame = 1 

Query: 7   VVVVVVFVLLVVHANGRNVPGGGSGDGDGM-LDLAVAPVAGQPSSNDVD-QKNIYGGVGG 66
           +VV+V FV  +++ +GR VP G S  G+   L+ A +PVA  P    VD QKNI+GGVGG
Sbjct: 5   IVVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFGGVGG 64

Query: 67  FAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPFP 121
           F GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGHGGFG GVGGVGGVGGGVVPFP
Sbjct: 65  FTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]
BLAST of CmoCh08G010090 vs. NCBI nr
Match: gi|763761018|gb|KJB28272.1| (hypothetical protein B456_005G039500 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 1 

Query: 5   HVVVVVVVFVLLVVHA-NGRNVPG--GGSGDGDGMLDLAVAPVAGQPSSNDVDQKN--IY 64
           ++ V++ VFVLL  H  + RNVPG  G +G     +  A AP A  P  N +D K   +Y
Sbjct: 3   NLCVLLFVFVLLTAHVCHARNVPGNNGLNGSKKEQIMEANAPKAESPKGNGIDDKKHFVY 62

Query: 65  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIGGGIGFGH-------GGFGGGVGGVG 116
           GGVGGFAG+GGY G  G  P +GG+G IGK+GGIGG  G G        GG GGG+GG+G
Sbjct: 63  GGVGGFAGVGGYAGVAGGLPLVGGLGGIGKFGGIGGAAGIGGYKGIGGVGGLGGGIGGLG 122

[Close]
BLAST of CmoCh08G010090 vs. NCBI nr
Match: gi|743916416|ref|XP_011002183.1| (PREDICTED: elastin [Populus euphratica])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 60/118 (50.85%), Postives = 74/118 (62.71%), Query Frame = 1 

Query: 8   VVVVVFVLLVVHANGRNVPGGGSGDGDGMLDL------AVAPVAGQPSSNDV-DQKN-IY 67
           VV+ V VL  VHA+ RNVP     D +  +        A AP+A  PSS  + D+KN IY
Sbjct: 5   VVIFVIVLAFVHASARNVPSDADLDSNNAVPSEEQVLHASAPMAESPSSTGLKDKKNFIY 64

Query: 68  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGG 116
           GGVGGFAGMGGY G  G  P +GG+G +G YGG+GG  G G     GG+GG+GG+GGG
Sbjct: 65  GGVGGFAGMGGYAGIIGGLPIIGGLGGLGNYGGVGGVGGIGGVTGTGGLGGLGGLGGG 122

[Close]
BLAST of CmoCh08G010090 vs. NCBI nr
Match: gi|802633789|ref|XP_012077672.1| (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Jatropha curcas])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 72/145 (49.66%), Postives = 82/145 (56.55%), Query Frame = 1 

Query: 9   VVVVFVLLVVHANGRNVPGGGSGDGDGMLD-----------------------------L 68
           +V + VL  VHAN RNVP   S D  G++                               
Sbjct: 6   LVFLLVLAFVHANARNVP---SSDHAGLISDQKNFIHPCPPKETTVDDNLPNQQVFVHAS 65

Query: 69  AVAPV-AGQPSSNDV-DQKN-IYGGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIG-- 116
           A APV A  P+S  + D+KN IYGGVGGFAGMGGY G  G FP LGGVG IGKYGGIG  
Sbjct: 66  ATAPVMAESPASTGLKDKKNFIYGGVGGFAGMGGYAGVVGGFPVLGGVGGIGKYGGIGGI 125

[Close]
BLAST of CmoCh08G010090 vs. NCBI nr
Match: gi|566148902|ref|XP_006368895.1| (hypothetical protein POPTR_0001s14200g, partial [Populus trichocarpa])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 63/120 (52.50%), Postives = 76/120 (63.33%), Query Frame = 1 

Query: 8   VVVVVFVLLVVHANGRNVPGGGSGDGDGMLDL------AVAPVAGQPSSNDV-DQKN-IY 67
           VV+ V VL  VHA+ RNVP     D + ++        A AP+A  PSS  + D+KN IY
Sbjct: 12  VVIFVIVLAFVHASARNVPSDADLDSNNVVPNEEQVLHASAPMAESPSSTGLKDKKNFIY 71

Query: 68  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIG--GGIGFGHGGFGGGVGGVGGVGGG 116
           GGVGGFAGMGGY G  G  P +GG+G +GK GGIG  GGIG   G   GG+GG+GG GGG
Sbjct: 72  GGVGGFAGMGGYAGIIGGLPIIGGLGGLGKNGGIGGVGGIGGVTGPGTGGLGGLGGAGGG 131

The following BLAST results are available for this feature:
BLAST of CmoCh08G010090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G010090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2N7K2_GOSRA3.2e-1049.60Uncharacterized protein OS=Gossypium raimondii GN=B456_005G039500 PE=4 SV=1[more]
A0A067KEF2_JATCU1.0e-0849.66Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12927 PE=4 SV=1[more]
U5GTI3_POPTR1.4e-0852.50Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s14200g P... [more]
A0A067EY19_CITSI1.5e-0747.93Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047416mg PE=4 SV=1[more]
W9RUU1_9ROSA3.3e-0749.24Uncharacterized protein OS=Morus notabilis GN=L484_004621 PE=4 SV=1[more]
BLAST of CmoCh08G010090 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04660.11.3e-0746.15 glycine-rich protein[more]
BLAST of CmoCh08G010090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121600|ref|XP_008460740.1|1.7e-2869.83PREDICTED: WW domain-containing protein C660.06-like [Cucumis melo][more]
gi|763761018|gb|KJB28272.1|4.6e-1049.60hypothetical protein B456_005G039500 [Gossypium raimondii][more]
gi|743916416|ref|XP_011002183.1|1.1e-0850.85PREDICTED: elastin [Populus euphratica][more]
gi|802633789|ref|XP_012077672.1|1.5e-0849.66PREDICTED: glycine-rich cell wall structural protein 1.0-like [Jatropha curcas][more]
gi|566148902|ref|XP_006368895.1|1.9e-0852.50hypothetical protein POPTR_0001s14200g, partial [Populus trichocarpa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G010090.1CmoCh08G010090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G010090CmaCh08G010380Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G010090CsaV3_2G012110Cucumber (Chinese Long) v3cmocucB1026
CmoCh08G010090Carg11011Silver-seed gourdcarcmoB1452
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G010090Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G010090Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G010090Cucurbita pepo (Zucchini)cmocpeB862
CmoCh08G010090Cucurbita pepo (Zucchini)cmocpeB865
CmoCh08G010090Cucurbita pepo (Zucchini)cmocpeB866
CmoCh08G010090Bottle gourd (USVL1VR-Ls)cmolsiB797
CmoCh08G010090Bottle gourd (USVL1VR-Ls)cmolsiB823
CmoCh08G010090Cucumber (Gy14) v2cgybcmoB254
CmoCh08G010090Cucumber (Gy14) v2cgybcmoB421
CmoCh08G010090Cucumber (Gy14) v2cgybcmoB431
CmoCh08G010090Melon (DHL92) v3.6.1cmomedB935
CmoCh08G010090Melon (DHL92) v3.6.1cmomedB940
CmoCh08G010090Silver-seed gourdcarcmoB0326
CmoCh08G010090Silver-seed gourdcarcmoB0333
CmoCh08G010090Silver-seed gourdcarcmoB1061
CmoCh08G010090Silver-seed gourdcarcmoB1289
CmoCh08G010090Cucumber (Chinese Long) v3cmocucB1032
CmoCh08G010090Cucumber (Chinese Long) v3cmocucB1040
CmoCh08G010090Watermelon (97103) v2cmowmbB896
CmoCh08G010090Watermelon (97103) v2cmowmbB886
CmoCh08G010090Watermelon (97103) v2cmowmbB903
CmoCh08G010090Wax gourdcmowgoB1084
CmoCh08G010090Wax gourdcmowgoB1096
CmoCh08G010090Cucurbita moschata (Rifu)cmocmoB233
CmoCh08G010090Cucurbita moschata (Rifu)cmocmoB310
CmoCh08G010090Cucurbita moschata (Rifu)cmocmoB484
CmoCh08G010090Cucurbita moschata (Rifu)cmocmoB446
CmoCh08G010090Cucumber (Gy14) v1cgycmoB0721
CmoCh08G010090Cucurbita maxima (Rimu)cmacmoB279
CmoCh08G010090Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G010090Cucurbita maxima (Rimu)cmacmoB837
CmoCh08G010090Wild cucumber (PI 183967)cmocpiB879
CmoCh08G010090Wild cucumber (PI 183967)cmocpiB883
CmoCh08G010090Cucumber (Chinese Long) v2cmocuB868
CmoCh08G010090Cucumber (Chinese Long) v2cmocuB872
CmoCh08G010090Melon (DHL92) v3.5.1cmomeB832
CmoCh08G010090Melon (DHL92) v3.5.1cmomeB828
CmoCh08G010090Watermelon (Charleston Gray)cmowcgB792
CmoCh08G010090Watermelon (Charleston Gray)cmowcgB799
CmoCh08G010090Watermelon (97103) v1cmowmB856
CmoCh08G010090Watermelon (97103) v1cmowmB867