Carg11011 (gene) Silver-seed gourd

Overview
NameCarg11011
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_027 : 367475 .. 367916 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGGATTCACGTTGTTGTTGTTGTCGTGGTCGTGTTTTTTTTGCTCGTCGTGCATGCAAATGGACGTAACGTTCCAGGTTGCTAAACTATCACTAAACTCAAAAGTTTTATGTAACGAAGAAAATGTTTGTGTTGTTAATATTTTAAATACAGGTGGTGGTAGCGGGGATGGGGATGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGCGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

mRNA sequence

ATGGCGAGGATTCACGTTGTTGTTGTTGTCGTGGTCGTGTTTTTTTTGCTCGTCGTGCATGCAAATGGACGTAACGTTCCAGGTGGTGGTAGCGGGGATGGGGATGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGCGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

Coding sequence (CDS)

ATGGCGAGGATTCACGTTGTTGTTGTTGTCGTGGTCGTGTTTTTTTTGCTCGTCGTGCATGCAAATGGACGTAACGTTCCAGGTGGTGGTAGCGGGGATGGGGATGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGCGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

Protein sequence

MARIHVVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDVDQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPFP
Homology
[Close]
BLAST of Carg11011 vs. NCBI nr
Match: XP_022964503.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 38 LDLAVAPVAGQPSSNDVDQKNIYGGV 64
          LDLAVAPVAGQPSSNDVDQKNIYGGV
Sbjct: 37 LDLAVAPVAGQPSSNDVDQKNIYGGV 62

[Close]
BLAST of Carg11011 vs. NCBI nr
Match: XP_023000565.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 38 LDLAVAPVAGQPSSNDVDQKNIYGGV 64
          LDLAVAPVAGQPSSNDVDQKNIYGGV
Sbjct: 37 LDLAVAPVAGQPSSNDVDQKNIYGGV 62

[Close]
BLAST of Carg11011 vs. NCBI nr
Match: XP_023515156.1 (glycine-rich protein 23-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 37 MLDLAVAPVAGQPSSNDVDQKNIYGGV 64
          M+D+AVAPVAGQPSSNDVDQKNIYGGV
Sbjct: 36 MVDMAVAPVAGQPSSNDVDQKNIYGGV 62

The following BLAST results are available for this feature:
BLAST of Carg11011 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964503.11.1e-04100.00glycine-rich protein 5-like [Cucurbita moschata][more]
XP_023000565.11.1e-04100.00glycine-rich protein 5-like [Cucurbita maxima][more]
XP_023515156.11.1e-0492.59glycine-rich protein 23-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg11011 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg11011 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg11011 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11011-RACarg11011-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34463FAMILY NOT NAMEDcoord: 8..117

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11011CmaCh08G010380Cucurbita maxima (Rimu)carcmaB1495
Carg11011CmoCh08G010090Cucurbita moschata (Rifu)carcmoB1452
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg11011Silver-seed gourdcarcarB267
Carg11011Silver-seed gourdcarcarB275
Carg11011Silver-seed gourdcarcarB615
Carg11011Silver-seed gourdcarcarB649
Carg11011Cucumber (Gy14) v2carcgybB1056
Carg11011Cucumber (Gy14) v2carcgybB1058
Carg11011Cucumber (Gy14) v2carcgybB1059
Carg11011Cucumber (Gy14) v1carcgyB1190
Carg11011Cucurbita maxima (Rimu)carcmaB1485
Carg11011Cucurbita maxima (Rimu)carcmaB1489
Carg11011Cucurbita maxima (Rimu)carcmaB1492
Carg11011Cucurbita maxima (Rimu)carcmaB1494
Carg11011Cucurbita moschata (Rifu)carcmoB1443
Carg11011Cucurbita moschata (Rifu)carcmoB1448
Carg11011Cucurbita moschata (Rifu)carcmoB1450
Carg11011Cucurbita moschata (Rifu)carcmoB1451
Carg11011Cucurbita pepo (Zucchini)carcpeB1501
Carg11011Cucurbita pepo (Zucchini)carcpeB1503
Carg11011Cucurbita pepo (Zucchini)carcpeB1504
Carg11011Cucurbita pepo (Zucchini)carcpeB1506
Carg11011Cucurbita pepo (Zucchini)carcpeB1507
Carg11011Wild cucumber (PI 183967)carcpiB1112
Carg11011Wild cucumber (PI 183967)carcpiB1114
Carg11011Wild cucumber (PI 183967)carcpiB1115
Carg11011Cucumber (Chinese Long) v2carcuB1090
Carg11011Cucumber (Chinese Long) v2carcuB1092
Carg11011Cucumber (Chinese Long) v2carcuB1093
Carg11011Cucumber (Chinese Long) v3carcucB1123
Carg11011Cucumber (Chinese Long) v3carcucB1125
Carg11011Cucumber (Chinese Long) v3carcucB1126
Carg11011Bottle gourd (USVL1VR-Ls)carlsiB981
Carg11011Bottle gourd (USVL1VR-Ls)carlsiB983
Carg11011Melon (DHL92) v3.5.1carmeB1046
Carg11011Melon (DHL92) v3.5.1carmeB1050
Carg11011Melon (DHL92) v3.6.1carmedB1060
Carg11011Melon (DHL92) v3.6.1carmedB1064
Carg11011Watermelon (Charleston Gray)carwcgB1045
Carg11011Watermelon (Charleston Gray)carwcgB1046
Carg11011Watermelon (Charleston Gray)carwcgB1050
Carg11011Watermelon (97103) v1carwmB1075
Carg11011Watermelon (97103) v1carwmB1077
Carg11011Watermelon (97103) v2carwmbB1131
Carg11011Watermelon (97103) v2carwmbB1133
Carg11011Watermelon (97103) v2carwmbB1137
Carg11011Wax gourdcarwgoB1263