CmoCh08G010090.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G010090.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr08 : 6567858 .. 6568296 (-)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGATTCACGTTGTTGTTGTCGTGGTCGTGTTTGTTTTGCTCGTCGTGCATGCAAATGGACGTAATGTTCCAGGTTGCTAAACTATCACTAAACTCAAAAGTTTTATGTAACGAAGAAAATGCTTGTGTTGTTAATATTTTAAATACAGGTGGTGGTAGCGGGGATGGGGACGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

mRNA sequence

ATGGCGAAGATTCACGTTGTTGTTGTCGTGGTCGTGTTTGTTTTGCTCGTCGTGCATGCAAATGGACGTAATGTTCCAGGTGGTGGTAGCGGGGATGGGGACGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

Coding sequence (CDS)

ATGGCGAAGATTCACGTTGTTGTTGTCGTGGTCGTGTTTGTTTTGCTCGTCGTGCATGCAAATGGACGTAATGTTCCAGGTGGTGGTAGCGGGGATGGGGACGGAATGCTAGACCTGGCTGTGGCACCGGTAGCGGGTCAGCCGAGCAGCAACGATGTCGACCAAAAGAATATCTATGGTGGGGTTGGAGGTTTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTAATTGGGAAGTACGGCGGAATTGGTGGTGGGATTGGGTTTGGTCACGGTGGCTTTGGAGGCGGAGTTGGCGGCGTTGGCGGCGTAGGTGGTGGAGTTGTGCCATTTCCTTGA

Homology

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BLAST of CmoCh08G010090.1 vs. TrEMBL
Match: A0A0D2N7K2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G039500 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 1


Query: 5   HVVVVVVVFVLLVVHA-NGRNVPG--GGSGDGDGMLDLAVAPVAGQPSSNDVDQKN--IY 64
           ++ V++ VFVLL  H  + RNVPG  G +G     +  A AP A  P  N +D K   +Y
Sbjct: 3   NLCVLLFVFVLLTAHVCHARNVPGNNGLNGSKKEQIMEANAPKAESPKGNGIDDKKHFVY 62

Query: 65  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIGGGIGFGH-------GGFGGGVGGVG 116
           GGVGGFAG+GGY G  G  P +GG+G IGK+GGIGG  G G        GG GGG+GG+G
Sbjct: 63  GGVGGFAGVGGYAGVAGGLPLVGGLGGIGKFGGIGGAAGIGGYKGIGGVGGLGGGIGGLG 122

[Close]

BLAST of CmoCh08G010090.1 vs. TrEMBL
Match: A0A067KEF2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12927 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 72/145 (49.66%), Postives = 82/145 (56.55%), Query Frame = 1


Query: 9   VVVVFVLLVVHANGRNVPGGGSGDGDGMLD-----------------------------L 68
           +V + VL  VHAN RNVP   S D  G++                               
Sbjct: 6   LVFLLVLAFVHANARNVP---SSDHAGLISDQKNFIHPCPPKETTVDDNLPNQQVFVHAS 65

Query: 69  AVAPV-AGQPSSNDV-DQKN-IYGGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIG-- 116
           A APV A  P+S  + D+KN IYGGVGGFAGMGGY G  G FP LGGVG IGKYGGIG  
Sbjct: 66  ATAPVMAESPASTGLKDKKNFIYGGVGGFAGMGGYAGVVGGFPVLGGVGGIGKYGGIGGI 125

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BLAST of CmoCh08G010090.1 vs. TrEMBL
Match: U5GTI3_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s14200g PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 63/120 (52.50%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 8   VVVVVFVLLVVHANGRNVPGGGSGDGDGMLDL------AVAPVAGQPSSNDV-DQKN-IY 67
           VV+ V VL  VHA+ RNVP     D + ++        A AP+A  PSS  + D+KN IY
Sbjct: 12  VVIFVIVLAFVHASARNVPSDADLDSNNVVPNEEQVLHASAPMAESPSSTGLKDKKNFIY 71

Query: 68  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIG--GGIGFGHGGFGGGVGGVGGVGGG 116
           GGVGGFAGMGGY G  G  P +GG+G +GK GGIG  GGIG   G   GG+GG+GG GGG
Sbjct: 72  GGVGGFAGMGGYAGIIGGLPIIGGLGGLGKNGGIGGVGGIGGVTGPGTGGLGGLGGAGGG 131

[Close]

BLAST of CmoCh08G010090.1 vs. TrEMBL
Match: A0A067EY19_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047416mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 58/121 (47.93%), Postives = 76/121 (62.81%), Query Frame = 1


Query: 9   VVVVFVLLVVHA-NGRNVPGGGSGDG------DGMLDLAVAPVAGQPSSNDVDQKN--IY 68
           V+ V VL+V+HA   R +P  G+ +       + ++  A AP A  P    +D K   IY
Sbjct: 6   VISVLVLVVLHAAEARKIPSNGALNERKSHWQETIVHAADAPKAESPRGAGLDDKKNFIY 65

Query: 69  GGVGGFAGMGGYIGGL--FPHLGGVGVIGKYGGIGGGIGFGHGGFG--GGVGGVGGVGGG 117
           GGVGGFAG+GG+ GG+   P +GG+G IGKYGGIGGG+G G GG G  GG GG+GG GG 
Sbjct: 66  GGVGGFAGVGGFAGGIGGLPLIGGLGGIGKYGGIGGGVG-GLGGLGGLGGAGGLGGAGGS 125

[Close]

BLAST of CmoCh08G010090.1 vs. TrEMBL
Match: W9RUU1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004621 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-07
Identity = 65/132 (49.24%), Postives = 76/132 (57.58%), Query Frame = 1


Query: 3   KIHVVVVVVVFVLLVVHAN-GRNVPGGGSGDGD-------GMLDLAVAPVAGQPSSNDVD 62
           KI     + V  L+ +HA   RNVP   +   D         L  A +P   +  +   D
Sbjct: 2   KIKYWFSIFVLALVSIHATTARNVPSTTATTDDVNPSEETTTLLHATSPKGAESPAAVDD 61

Query: 63  QKN-IYGGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIGG--GIGFGHGGFG-----G 117
           +KN IYGGVGGFAGMGGY G  G+ P LGG+G IGK+ GIGG  GIG G GG G     G
Sbjct: 62  KKNFIYGGVGGFAGMGGYAGVAGVLPTLGGIGTIGKFSGIGGVGGIGGGVGGLGGAGGLG 121

[Close]

BLAST of CmoCh08G010090.1 vs. TAIR10
Match: AT1G04660.1 (AT1G04660.1 glycine-rich protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 60/130 (46.15%), Postives = 71/130 (54.62%), Query Frame = 1


Query: 8   VVVVVFVLLVVHANGRNVPG-GGSGDGDGMLDLAVAPVAGQ-----PSSNDVDQKNIYG- 67
           VV V+  +  V A  R VPG    G   G  D    P+  +     P  +  D+K I G 
Sbjct: 7   VVCVLLAISFVCARARQVPGESDEGKTTGHDDTTTMPMHAKAADQLPPKSVGDKKCIGGV 66

Query: 68  -GVGGFAGMGGY--IGGL-FPHLGGVGVIGKYGGIGGGIGFGH----------GGFGGGV 117
            GVGGFAG+GG   +GGL  P +GG+G IGKYGGIGG  G G           GG GGGV
Sbjct: 67  AGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGFHSIGGVGGLGGVGGGV 126

[Close]

BLAST of CmoCh08G010090.1 vs. NCBI nr
Match: gi|659121600|ref|XP_008460740.1| (PREDICTED: WW domain-containing protein C660.06-like [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 81/116 (69.83%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 7   VVVVVVFVLLVVHANGRNVPGGGSGDGDGM-LDLAVAPVAGQPSSNDVD-QKNIYGGVGG 66
           +VV+V FV  +++ +GR VP G S  G+   L+ A +PVA  P    VD QKNI+GGVGG
Sbjct: 5   IVVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFGGVGG 64

Query: 67  FAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPFP 121
           F GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGHGGFG GVGGVGGVGGGVVPFP
Sbjct: 65  FTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]

BLAST of CmoCh08G010090.1 vs. NCBI nr
Match: gi|763761018|gb|KJB28272.1| (hypothetical protein B456_005G039500 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 1


Query: 5   HVVVVVVVFVLLVVHA-NGRNVPG--GGSGDGDGMLDLAVAPVAGQPSSNDVDQKN--IY 64
           ++ V++ VFVLL  H  + RNVPG  G +G     +  A AP A  P  N +D K   +Y
Sbjct: 3   NLCVLLFVFVLLTAHVCHARNVPGNNGLNGSKKEQIMEANAPKAESPKGNGIDDKKHFVY 62

Query: 65  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIGGGIGFGH-------GGFGGGVGGVG 116
           GGVGGFAG+GGY G  G  P +GG+G IGK+GGIGG  G G        GG GGG+GG+G
Sbjct: 63  GGVGGFAGVGGYAGVAGGLPLVGGLGGIGKFGGIGGAAGIGGYKGIGGVGGLGGGIGGLG 122

[Close]

BLAST of CmoCh08G010090.1 vs. NCBI nr
Match: gi|743916416|ref|XP_011002183.1| (PREDICTED: elastin [Populus euphratica])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 60/118 (50.85%), Postives = 74/118 (62.71%), Query Frame = 1


Query: 8   VVVVVFVLLVVHANGRNVPGGGSGDGDGMLDL------AVAPVAGQPSSNDV-DQKN-IY 67
           VV+ V VL  VHA+ RNVP     D +  +        A AP+A  PSS  + D+KN IY
Sbjct: 5   VVIFVIVLAFVHASARNVPSDADLDSNNAVPSEEQVLHASAPMAESPSSTGLKDKKNFIY 64

Query: 68  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGG 116
           GGVGGFAGMGGY G  G  P +GG+G +G YGG+GG  G G     GG+GG+GG+GGG
Sbjct: 65  GGVGGFAGMGGYAGIIGGLPIIGGLGGLGNYGGVGGVGGIGGVTGTGGLGGLGGLGGG 122

[Close]

BLAST of CmoCh08G010090.1 vs. NCBI nr
Match: gi|802633789|ref|XP_012077672.1| (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Jatropha curcas])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 72/145 (49.66%), Postives = 82/145 (56.55%), Query Frame = 1


Query: 9   VVVVFVLLVVHANGRNVPGGGSGDGDGMLD-----------------------------L 68
           +V + VL  VHAN RNVP   S D  G++                               
Sbjct: 6   LVFLLVLAFVHANARNVP---SSDHAGLISDQKNFIHPCPPKETTVDDNLPNQQVFVHAS 65

Query: 69  AVAPV-AGQPSSNDV-DQKN-IYGGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIG-- 116
           A APV A  P+S  + D+KN IYGGVGGFAGMGGY G  G FP LGGVG IGKYGGIG  
Sbjct: 66  ATAPVMAESPASTGLKDKKNFIYGGVGGFAGMGGYAGVVGGFPVLGGVGGIGKYGGIGGI 125

[Close]

BLAST of CmoCh08G010090.1 vs. NCBI nr
Match: gi|566148902|ref|XP_006368895.1| (hypothetical protein POPTR_0001s14200g, partial [Populus trichocarpa])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 63/120 (52.50%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 8   VVVVVFVLLVVHANGRNVPGGGSGDGDGMLDL------AVAPVAGQPSSNDV-DQKN-IY 67
           VV+ V VL  VHA+ RNVP     D + ++        A AP+A  PSS  + D+KN IY
Sbjct: 12  VVIFVIVLAFVHASARNVPSDADLDSNNVVPNEEQVLHASAPMAESPSSTGLKDKKNFIY 71

Query: 68  GGVGGFAGMGGYIG--GLFPHLGGVGVIGKYGGIG--GGIGFGHGGFGGGVGGVGGVGGG 116
           GGVGGFAGMGGY G  G  P +GG+G +GK GGIG  GGIG   G   GG+GG+GG GGG
Sbjct: 72  GGVGGFAGMGGYAGIIGGLPIIGGLGGLGKNGGIGGVGGIGGVTGPGTGGLGGLGGAGGG 131

The following BLAST results are available for this feature:

BLAST of CmoCh08G010090.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G010090.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2N7K2_GOSRA	3.2e-10	49.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G039500 PE=4 SV=1	[more]
A0A067KEF2_JATCU	1.0e-08	49.66	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12927 PE=4 SV=1	[more]
U5GTI3_POPTR	1.4e-08	52.50	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s14200g P...	[more]
A0A067EY19_CITSI	1.5e-07	47.93	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047416mg PE=4 SV=1	[more]
W9RUU1_9ROSA	3.3e-07	49.24	Uncharacterized protein OS=Morus notabilis GN=L484_004621 PE=4 SV=1	[more]

BLAST of CmoCh08G010090.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04660.1	1.3e-07	46.15	glycine-rich protein	[more]

BLAST of CmoCh08G010090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121600\|ref\|XP_008460740.1\|	1.7e-28	69.83	PREDICTED: WW domain-containing protein C660.06-like [Cucumis melo]	[more]
gi\|763761018\|gb\|KJB28272.1\|	4.6e-10	49.60	hypothetical protein B456_005G039500 [Gossypium raimondii]	[more]
gi\|743916416\|ref\|XP_011002183.1\|	1.1e-08	50.85	PREDICTED: elastin [Populus euphratica]	[more]
gi\|802633789\|ref\|XP_012077672.1\|	1.5e-08	49.66	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Jatropha curcas]	[more]
gi\|566148902\|ref\|XP_006368895.1\|	1.9e-08	52.50	hypothetical protein POPTR_0001s14200g, partial [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G010090	CmoCh08G010090	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010090.1	CmoCh08G010090.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010090.1.CDS.2	CmoCh08G010090.1.CDS.2	CDS
CmoCh08G010090.1.CDS.1	CmoCh08G010090.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010090.1.exon.2	CmoCh08G010090.1.exon.2	exon
CmoCh08G010090.1.exon.1	CmoCh08G010090.1.exon.1	exon