CmoCh08G008900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G008900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 5759729 .. 5762138 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCGCCATTTTCCCTCTCTCCGTATCACCATGCTTACGATTCAGGTTGCAGAGGTGGAAGTGTTGAAGAACAATCTTCTTCCACTTCTCCAAATTTCTCACCACGCCGATTTCAGATTCTCCCGCTCAACCGTCTCCTTCACTGTCGCCGGCTCCCACAACTCCTCTCTCATTTTCGCACGCCTCGAGGTATTTCACCCTTTCTTCATCCTCTTGTCCTCCAATCACCCTCGAGAGTTCCATTCCTGTATTCAGATCGACAGCTTGTTCCTAGCCACCTTCATTACCGGCACCGACGATCGCCTCTTGACCATTTTCATGCCTGATGATCATACCTTCTCTAATCTCGTTTTCACCACATGTATGGTTCTCATTCTTTTATTTTTTCTTGATGAATCTGCGATTTCTTGTTTGTAATTTTGAGATTCAGGGGAAATTTCAATCGCGTTTAGTTTTAGGGTTTTGTTTTTATTCGATTGTGCTTGGGAATGGATCTCGTGTAGGAATTGGATTGATTGTAAACAAAAGCCCTAAAGTTCCGATCCGATTAGATTTGGTTAAACCTGTCAATTACAAGATGGTGTTGATTCCCGTTTCTTCGTCTTTCTTGAGTCTAGGTCGTAATTGTTGGTATTGATTTCAGGCGTTGGGCATTTGGAATATTGCTCTCCAATGCAGATGGGACCTCCTCTAAATATTCAAGTGGCATCAATGGCCGGCGGAATATTTGTGGCCGTCAACGCAGAATGGTTCAGAGACGTTGCTACAAGATTATCTGCCTTCAGTACTAAAAGTAAATCAACTTCTTCTACCCTTTTGGAGTTTTACGTTTATTTGCTTATCTTCTTGTAAGTTTATGAAAGCTTGTCTTCTGGAACAGTCTCGGTTACTGCAAAGGATTCAGAAGTGAAATTCTGTGCTGCAGAGATGGATTTTGTGATTCCTATAGAGGTACACTGTATTTATCCCTTGGTAGTTCGAGGAAACTTTTCAAGTGTCTGAATTGAAACCATTCCTTTCATGGGCTTGAATATAAAGAAACTAGTAGAGATCACTATTAGGAATCACGACTCTCTACAATGATATGATATTGTACACTTTGAGCATAAACTCTCATGGCTTTGTTTTGGGCTTCCCCAAAAGGCCACGTACCAATGGAGATGTATTCCTTATCATTCCCAAAATTAGTCCATGTGGAGACTCTCTCCCGACAATCCTCAACAATCCTCTCCTCGAACAAAATACACTATAGAGCCTCCACTTAATCGAGGCTCAACTCTTTCCTTGGAGTCTTCGAACAAAGTACACTCTTTGTTCGACACTTGAGGGTTCTATTGACATGGCTAAGTTAAGGGCATGACTCTGATACCATGTTATGAATTATAACTCCCCACAATGATATGATATTTTCCACTTTGAGAATAAGCTCTTATGGATTTGCTTTTGGTTTTCTCAAAATCCCTCGTACCAATGGAGATGTATTCCTTACTTATAAACCCATGATTATTCCTTAAATTAGCCAACGTGGAACTTCTTCCCGACAATCCTCAACAATCATGTGTTCAAATTTTTATTGCATACTTTCCTTCCTTGATATTGATAACCACTTGTTACATTTTAGGCCAAATGGACCCATGTTCCATGTTTGAACTTTTTGTATGTTATTTCTTTCTTGATTAACATCGATAGTCTCTTGTTCAACCGTAGCATGATTTCCAAGCTCATAAATTGAGTGTTTAGAATGCAAATAAATGATCTAATATATGAAGATCTATAGACTTAATCTTTTAGGAACTAATTTAGGAGCCTAGAAATGAAGATTTGGTCAAGAATACCAAAAAATGATCAAATATATCATACTTGTATGCAGGGGAACCGGTGCAGAGTTGAAGGAACATTGGGCGGTGGAGTTCGATTTGAAGTGAGTGTGATACCGTTGCAATTTTTCATCCGAGCATCACAGCTTGACAAGATGGTGTATTTCTATGGGTCAACTGAGAAGAACACTTTAGTGGTATTCGAGACTGGGTATTGGACCAACATTGTGGCCAGTAACCCACAAGATCGCTGGGAACAACTTTAGACGAAGTCTTTTACTTTCCTTCTCTCCCCCAAATAGAATTGGACGAAGCTATTAGAATAGCAGTCAAATGTGCATATAAGTATATTACCAATATGTTCATTCTTTCATTCTCCATCCATATTTTTTCTCATTCGTTCATTCATGATTAAAAGTTCGTCATCTCAATTTTGAACAACATTACGGTTGTATAATCTAGCTTCTTTAGCCTTTTAGATTTTCCGTTGTACTAGAGATGTTCATTTTATTAGAGGGAACTCACCCCAAATGGGAAGAGAATTTCTCATCTAGACAATTTTTTTTTGTTTGATAAATGGAGTTGGTGACAGA

mRNA sequence

CCCCGCCATTTTCCCTCTCTCCGTATCACCATGCTTACGATTCAGGTTGCAGAGGTGGAAGTGTTGAAGAACAATCTTCTTCCACTTCTCCAAATTTCTCACCACGCCGATTTCAGATTCTCCCGCTCAACCGTCTCCTTCACTGTCGCCGGCTCCCACAACTCCTCTCTCATTTTCGCACGCCTCGAGGTATTTCACCCTTTCTTCATCCTCTTGTCCTCCAATCACCCTCGAGAGTTCCATTCCTGTATTCAGATCGACAGCTTGTTCCTAGCCACCTTCATTACCGGCACCGACGATCGCCTCTTGACCATTTTCATGCCTGATGATCATACCTTCTCTAATCTCGTTTTCACCACATGCGTTGGGCATTTGGAATATTGCTCTCCAATGCAGATGGGACCTCCTCTAAATATTCAAGTGGCATCAATGGCCGGCGGAATATTTGTGGCCGTCAACGCAGAATGGTTCAGAGACGTTGCTACAAGATTATCTGCCTTCAGTACTAAAATCTCGGTTACTGCAAAGGATTCAGAAGTGAAATTCTGTGCTGCAGAGATGGATTTTGTGATTCCTATAGAGGGGAACCGGTGCAGAGTTGAAGGAACATTGGGCGGTGGAGTTCGATTTGAAGTGAGTGTGATACCGTTGCAATTTTTCATCCGAGCATCACAGCTTGACAAGATGGTGTATTTCTATGGGTCAACTGAGAAGAACACTTTAGTGGTATTCGAGACTGGGTATTGGACCAACATTGTGGCCAGTAACCCACAAGATCGCTGGGAACAACTTTAGACGAAGTCTTTTACTTTCCTTCTCTCCCCCAAATAGAATTGGACGAAGCTATTAGAATAGCAGTCAAATGTGCATATAAGTATATTACCAATATGTTCATTCTTTCATTCTCCATCCATATTTTTTCTCATTCGTTCATTCATGATTAAAAGTTCGTCATCTCAATTTTGAACAACATTACGGTTGTATAATCTAGCTTCTTTAGCCTTTTAGATTTTCCGTTGTACTAGAGATGTTCATTTTATTAGAGGGAACTCACCCCAAATGGGAAGAGAATTTCTCATCTAGACAATTTTTTTTTGTTTGATAAATGGAGTTGGTGACAGA

Coding sequence (CDS)

ATGCTTACGATTCAGGTTGCAGAGGTGGAAGTGTTGAAGAACAATCTTCTTCCACTTCTCCAAATTTCTCACCACGCCGATTTCAGATTCTCCCGCTCAACCGTCTCCTTCACTGTCGCCGGCTCCCACAACTCCTCTCTCATTTTCGCACGCCTCGAGGTATTTCACCCTTTCTTCATCCTCTTGTCCTCCAATCACCCTCGAGAGTTCCATTCCTGTATTCAGATCGACAGCTTGTTCCTAGCCACCTTCATTACCGGCACCGACGATCGCCTCTTGACCATTTTCATGCCTGATGATCATACCTTCTCTAATCTCGTTTTCACCACATGCGTTGGGCATTTGGAATATTGCTCTCCAATGCAGATGGGACCTCCTCTAAATATTCAAGTGGCATCAATGGCCGGCGGAATATTTGTGGCCGTCAACGCAGAATGGTTCAGAGACGTTGCTACAAGATTATCTGCCTTCAGTACTAAAATCTCGGTTACTGCAAAGGATTCAGAAGTGAAATTCTGTGCTGCAGAGATGGATTTTGTGATTCCTATAGAGGGGAACCGGTGCAGAGTTGAAGGAACATTGGGCGGTGGAGTTCGATTTGAAGTGAGTGTGATACCGTTGCAATTTTTCATCCGAGCATCACAGCTTGACAAGATGGTGTATTTCTATGGGTCAACTGAGAAGAACACTTTAGTGGTATTCGAGACTGGGTATTGGACCAACATTGTGGCCAGTAACCCACAAGATCGCTGGGAACAACTTTAG
Homology
[Close]
BLAST of CmoCh08G008900 vs. NCBI nr
Match: gi|778721940|ref|XP_011658377.1| (PREDICTED: uncharacterized protein LOC105435978 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 7.2e-21
Identity = 81/262 (30.92%), Postives = 129/262 (49.24%), Query Frame = 1 

Query: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI 60
           M T+Q+  +  L++++  LL +S+ A  R   S+VS  V+ S  S       ++F PFF 
Sbjct: 1   MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT 60

Query: 61  LLSSNHPREFHSCIQIDSLFLATFITGTDDRLLTIFMPDDHTFSNLVFTTCVGHLEYCSP 120
           + S     +      ID   L+  I   +D  LTI +P   + ++L+ +T  G     + 
Sbjct: 61  IFSRG---DGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTRDGKFRSLAS 120

Query: 121 MQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCA--AEMD 180
           +    P N  V+     +FVA++A  FR++  RLS ++  I  TA  S+VKF    AE +
Sbjct: 121 LWTMLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGE 180

Query: 181 FV----IPIEGNRCRVEGTLGGG-------VRFEVSVIPLQFFIRASQLDKMVYFYGSTE 240
            +    +  E   C     L GG       ++F  ++ P  FF R+ +L K+V+F+ ST 
Sbjct: 181 IIGATLLTAERREC-----LAGGFNDKDYEIKFSFALKPKDFFGRSMELTKLVWFFESTR 240

Query: 241 KNTLVVFETGYWTNIVASNPQD 250
            NT V+     WTNIVAS P+D
Sbjct: 241 WNTTVICFAREWTNIVASYPRD 254

The following BLAST results are available for this feature:
BLAST of CmoCh08G008900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh08G008900 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh08G008900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh08G008900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778721940|ref|XP_011658377.1|7.2e-2130.92PREDICTED: uncharacterized protein LOC105435978 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G008900.1CmoCh08G008900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.70.10.10coord: 1..236
score: 2.
NoneNo IPR availableunknownSSF55979DNA clampcoord: 139..238
score: 7.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G008900CmaCh17G004200Cucurbita maxima (Rimu)cmacmoB377
CmoCh08G008900CmaCh08G009170Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G008900Cla001215Watermelon (97103) v1cmowmB871
CmoCh08G008900ClCG06G003870Watermelon (Charleston Gray)cmowcgB795
CmoCh08G008900Lsi09G015530Bottle gourd (USVL1VR-Ls)cmolsiB803
CmoCh08G008900Cp4.1LG12g03590Cucurbita pepo (Zucchini)cmocpeB840
CmoCh08G008900Cp4.1LG17g03520Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G008900CsaV3_6G000420Cucumber (Chinese Long) v3cmocucB1055
CmoCh08G008900Cla97C06G113270Watermelon (97103) v2cmowmbB891
CmoCh08G008900CsGy6G000440Cucumber (Gy14) v2cgybcmoB854
CmoCh08G008900Carg27104Silver-seed gourdcarcmoB0828
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh08G008900CmoCh17G003990Cucurbita moschata (Rifu)cmocmoB321
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G008900Cucumber (Gy14) v2cgybcmoB432
CmoCh08G008900Melon (DHL92) v3.6.1cmomedB908
CmoCh08G008900Melon (DHL92) v3.6.1cmomedB944
CmoCh08G008900Silver-seed gourdcarcmoB0105
CmoCh08G008900Cucumber (Chinese Long) v3cmocucB1041
CmoCh08G008900Wax gourdcmowgoB1094
CmoCh08G008900Wax gourdcmowgoB1107
CmoCh08G008900Cucurbita moschata (Rifu)cmocmoB297
CmoCh08G008900Wild cucumber (PI 183967)cmocpiB891
CmoCh08G008900Wild cucumber (PI 183967)cmocpiB903
CmoCh08G008900Cucumber (Chinese Long) v2cmocuB890
CmoCh08G008900Melon (DHL92) v3.5.1cmomeB835
CmoCh08G008900Watermelon (97103) v1cmowmB859