Carg27104 (gene) Silver-seed gourd

NameCarg27104
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_447 : 151402 .. 153629 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACGATTCAGGTTGCAGAGGTGGAAGTGTTGAAGAACAATCTTCTTCCACTTCTCCAAATTTCTCACCACGCCGATTTCAGATTCTCCCGCTCAACCGTCTCCTTCACTGTCGCCGGCTCCCACAACTCCTCTCTCATTTTCGCACGCCTTGAGGTATTTCACCCTTTCTTCATCCTCTTGTCCTCCAATCACCCTCGAGAGTTCCATTCCTGTATTCAGATCGACAGCTTATTCCTAGCCACCTTCATTACCGGCACCGACGATCGCATCTTGACCATTTTCATGCCTGATGATCATACCTTCTCTAATCTCGTTTTCACCACATGTATGGTTCTCATTCTTTTATTTTTTTCTTGATGAATCTGCGATTTCTTGTTTGTAATTTTGAGATTCAGGGAAAATTTCAATCGCGTTTAGTTTTAGGGTTTTGTTTTTCTTCGATTGTGCTTGGGAATGGATCTCGTGTAGGAATTGGATTGATTGTAAACAAAAGCCCTAAAGTTCCGATTCGATTAGATTTGGTTAAACCTGTCAATTACAAGATGGTGTTGATTTCCGTTTCTTCGTCTTTCTTGAGTCTAGGTCGTAATTGTTGGTATTGATTTCAGGCGTTGGGCATTTGGAATATTGCTCTCCAATGCAGATGGGACCTCCTCTAAATATTCAAGTGGCATCAATGGCCGGCGGAATATTTGTGGCCGTCAACGCAGAATGGTTCAGAGACGTTGCTACAAGATTATCTGCCTTCAGTACTAAAAGTAAATCAACTTCTTCTACCCTTTTGGAGTTTTACGTTTATTTGCTTATCTTCTTGTAAGTTTATGAAAGCTTGTCTTCTGGAACAGTCTCGGTTACTGCAAAGGATTCAGAAGTGAAATTCTGTGCTGCAGAGATGGATTTTGTGATTCCTATAGAGGTACACTATATTTATCCCTTGGTAGTTCGAGGAAACTTTTCAAGTGTCTGAATTGAAACCATTCCTTTCATGGGCTTTTGTTAAGAATATAAAGAAACGATTATATTAGAGATCACTGTTAGGAATCACGACTCTCTACAATGATATGATATTGTACACTTTGAGCATAAGCTCTCATGACTTTGCTTTGGGCTTCCCCAAAAGGCCACGTACCAATGGAGATGTATTCCTTATCATTCCCTAAATTAGTCCATGTGGAGACTCTCTCCCGACAATCCTCAACAATCCTCCCCTCGAACAAAATACACTATAGAGCCTCCACTTAATTGAGGCCCAACTCTTTTCCTGGAGTCCTCGAACAAAGTACACCCTTTGTTCGACACTTGAGGATTCTATTGACATGGCTAAGTTAAGAGCATCGACTCTGATACCATGTTAGGAATCATGACTCTCCACAATGATATGATATTTTCCACTTTGAGCATAAGCTCTTATGGATTTGCTTTTGGTTTCCTCAAAATGCCTCGTACCAATGGAGATGTATTCCTTACTTATAAACCCATGATTATTGCTTAAATTAGCCAACGTGGAACTTCTTCCCGACAATCCTCAACAATCATGTGTTCAAATTTTTATTGCATACTTTCCTTCCTCGATATTGATAATCACTTGTTACATTTTAGGCCAAATGGACCCACGTTCTATGTTTGAACTTTTCGTATGTTATTTCTTTCTTGATTAACATCGATAGTCTCTTGTTCAACCGTACCATGATTTCCAAGCTCATAAATTGAGTGTTTAGAATGCAAATAAATGATCTAATCTATGAAGATCTATAGACTTAATCTTTTAGGAACTAATTTAGGAGCCTAGAAATGAAGATTTGGTCAAGAATACCAAAAAATGATCAAATATATCAATACTTGTATGCAGGGGAACCGGTGCAGAGTTGAAGGAACATTGGGCGGTGGAGTTCGATTTGAAGTGAGTGTGATACCGTTGCAATTTTTCATCCGAGCATCAGAGCTTGACAAGATGGTGTATTTCTATGGGTCAACTGAGAAGAACACTTTAGTGGTATTCGAGACTGGGTATTGGACCAACATTGTGGCCAGTAACCCACAAGATCGCTGGGAACAACTTTAGACGAAGTCTTTTACTTTCCTTCTCTCCCCCAAATAGAATTGGACGAAGCTATTAGAATGGCACTCAAATGTGCATATAAGTATATTACCAATATGTTCATTCTTTCATTCTCCATCCATATTTTTTCTGATTAAAAGTTCTGTCATCTCAATTTTGAATA

mRNA sequence

ATGCTTACGATTCAGGTTGCAGAGGTGGAAGTGTTGAAGAACAATCTTCTTCCACTTCTCCAAATTTCTCACCACGCCGATTTCAGATTCTCCCGCTCAACCGTCTCCTTCACTGTCGCCGGCTCCCACAACTCCTCTCTCATTTTCGCACGCCTTGAGGTATTTCACCCTTTCTTCATCCTCTTGTCCTCCAATCACCCTCGAGAGTTCCATTCCTGTATTCAGATCGACAGCTTATTCCTAGCCACCTTCATTACCGGCACCGACGATCGCATCTTGACCATTTTCATGCCTGATGATCATACCTTCTCTAATCTCGTTTTCACCACATGCGTTGGGCATTTGGAATATTGCTCTCCAATGCAGATGGGACCTCCTCTAAATATTCAAGTGGCATCAATGGCCGGCGGAATATTTGTGGCCGTCAACGCAGAATGGTTCAGAGACGTTGCTACAAGATTATCTGCCTTCAGTACTAAAATCTCGGTTACTGCAAAGGATTCAGAAGTGAAATTCTGTGCTGCAGAGATGGATTTTGTGATTCCTATAGAGGGGAACCGGTGCAGAGTTGAAGGAACATTGGGCGGTGGAGTTCGATTTGAAGTGAGTGTGATACCGTTGCAATTTTTCATCCGAGCATCAGAGCTTGACAAGATGGTGTATTTCTATGGGTCAACTGAGAAGAACACTTTAGTGGTATTCGAGACTGGGTATTGGACCAACATTGTGGCCAGTAACCCACAAGATCGCTGGGAACAACTTTAGACGAAGTCTTTTACTTTCCTTCTCTCCCCCAAATAGAATTGGACGAAGCTATTAGAATGGCACTCAAATGTGCATATAAGTATATTACCAATATGTTCATTCTTTCATTCTCCATCCATATTTTTTCTGATTAAAAGTTCTGTCATCTCAATTTTGAATA

Coding sequence (CDS)

ATGCTTACGATTCAGGTTGCAGAGGTGGAAGTGTTGAAGAACAATCTTCTTCCACTTCTCCAAATTTCTCACCACGCCGATTTCAGATTCTCCCGCTCAACCGTCTCCTTCACTGTCGCCGGCTCCCACAACTCCTCTCTCATTTTCGCACGCCTTGAGGTATTTCACCCTTTCTTCATCCTCTTGTCCTCCAATCACCCTCGAGAGTTCCATTCCTGTATTCAGATCGACAGCTTATTCCTAGCCACCTTCATTACCGGCACCGACGATCGCATCTTGACCATTTTCATGCCTGATGATCATACCTTCTCTAATCTCGTTTTCACCACATGCGTTGGGCATTTGGAATATTGCTCTCCAATGCAGATGGGACCTCCTCTAAATATTCAAGTGGCATCAATGGCCGGCGGAATATTTGTGGCCGTCAACGCAGAATGGTTCAGAGACGTTGCTACAAGATTATCTGCCTTCAGTACTAAAATCTCGGTTACTGCAAAGGATTCAGAAGTGAAATTCTGTGCTGCAGAGATGGATTTTGTGATTCCTATAGAGGGGAACCGGTGCAGAGTTGAAGGAACATTGGGCGGTGGAGTTCGATTTGAAGTGAGTGTGATACCGTTGCAATTTTTCATCCGAGCATCAGAGCTTGACAAGATGGTGTATTTCTATGGGTCAACTGAGAAGAACACTTTAGTGGTATTCGAGACTGGGTATTGGACCAACATTGTGGCCAGTAACCCACAAGATCGCTGGGAACAACTTTAG

Protein sequence

MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFILLSSNHPREFHSCIQIDSLFLATFITGTDDRILTIFMPDDHTFSNLVFTTCVGHLEYCSPMQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMDFVIPIEGNRCRVEGTLGGGVRFEVSVIPLQFFIRASELDKMVYFYGSTEKNTLVVFETGYWTNIVASNPQDRWEQL
BLAST of Carg27104 vs. NCBI nr
Match: XP_022964052.1 (uncharacterized protein LOC111464196 [Cucurbita moschata])

HSP 1 Score: 511.1 bits (1315), Expect = 2.1e-141
Identity = 252/254 (99.21%), Postives = 254/254 (100.00%), Query Frame = 0

Query: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI 60
           MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI
Sbjct: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI 60

Query: 61  LLSSNHPREFHSCIQIDSLFLATFITGTDDRILTIFMPDDHTFSNLVFTTCVGHLEYCSP 120
           LLSSNHPREFHSCIQIDSLFLATFITGTDDR+LTIFMPDDHTFSNLVFTTCVGHLEYCSP
Sbjct: 61  LLSSNHPREFHSCIQIDSLFLATFITGTDDRLLTIFMPDDHTFSNLVFTTCVGHLEYCSP 120

Query: 121 MQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMDFV 180
           MQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMDFV
Sbjct: 121 MQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMDFV 180

Query: 181 IPIEGNRCRVEGTLGGGVRFEVSVIPLQFFIRASELDKMVYFYGSTEKNTLVVFETGYWT 240
           IPIEGNRCRVEGTLGGGVRFEVSVIPLQFFIRAS+LDKMVYFYGSTEKNTLVVFETGYWT
Sbjct: 181 IPIEGNRCRVEGTLGGGVRFEVSVIPLQFFIRASQLDKMVYFYGSTEKNTLVVFETGYWT 240

Query: 241 NIVASNPQDRWEQL 255
           NIVASNPQDRWEQL
Sbjct: 241 NIVASNPQDRWEQL 254

BLAST of Carg27104 vs. NCBI nr
Match: XP_023000119.1 (uncharacterized protein LOC111494411 [Cucurbita maxima])

HSP 1 Score: 507.7 bits (1306), Expect = 2.3e-140
Identity = 249/254 (98.03%), Postives = 253/254 (99.61%), Query Frame = 0

Query: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI 60
           MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI
Sbjct: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI 60

Query: 61  LLSSNHPREFHSCIQIDSLFLATFITGTDDRILTIFMPDDHTFSNLVFTTCVGHLEYCSP 120
           LLSSNHPREFHSCIQIDSLFLATFITGTDDR+LTIFMPDDHTFSNLVFTTCVGHLEYCSP
Sbjct: 61  LLSSNHPREFHSCIQIDSLFLATFITGTDDRLLTIFMPDDHTFSNLVFTTCVGHLEYCSP 120

Query: 121 MQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMDFV 180
           MQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMDFV
Sbjct: 121 MQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMDFV 180

Query: 181 IPIEGNRCRVEGTLGGGVRFEVSVIPLQFFIRASELDKMVYFYGSTEKNTLVVFETGYWT 240
           IP+EGNRCRV GTLGGGVRFEVSV+PLQFFIRAS+LDKMVYFYGSTEKNTLVVFETGYWT
Sbjct: 181 IPVEGNRCRVGGTLGGGVRFEVSVVPLQFFIRASQLDKMVYFYGSTEKNTLVVFETGYWT 240

Query: 241 NIVASNPQDRWEQL 255
           NIVASNPQDRWEQL
Sbjct: 241 NIVASNPQDRWEQL 254

BLAST of Carg27104 vs. NCBI nr
Match: XP_023513812.1 (uncharacterized protein LOC111778309 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 504.6 bits (1298), Expect = 2.0e-139
Identity = 248/254 (97.64%), Postives = 253/254 (99.61%), Query Frame = 0

Query: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI 60
           MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI
Sbjct: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI 60

Query: 61  LLSSNHPREFHSCIQIDSLFLATFITGTDDRILTIFMPDDHTFSNLVFTTCVGHLEYCSP 120
           LLSSNHPREFHSCIQIDSLFLATFITGTDDR+LTIFMPDDHTFSNLVFTTCVGHLEYCSP
Sbjct: 61  LLSSNHPREFHSCIQIDSLFLATFITGTDDRLLTIFMPDDHTFSNLVFTTCVGHLEYCSP 120

Query: 121 MQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMDFV 180
           MQMGPPLNIQVASMAGG+FVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKF AA+MDFV
Sbjct: 121 MQMGPPLNIQVASMAGGLFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFYAAQMDFV 180

Query: 181 IPIEGNRCRVEGTLGGGVRFEVSVIPLQFFIRASELDKMVYFYGSTEKNTLVVFETGYWT 240
           IP+EGNRCRVEGTLGGGVRFEVSVIPLQFFIRAS+LDKMVYFYGSTEKNTLVVFETGYWT
Sbjct: 181 IPVEGNRCRVEGTLGGGVRFEVSVIPLQFFIRASQLDKMVYFYGSTEKNTLVVFETGYWT 240

Query: 241 NIVASNPQDRWEQL 255
           NIVASNPQDRWEQL
Sbjct: 241 NIVASNPQDRWEQL 254

BLAST of Carg27104 vs. NCBI nr
Match: XP_023006643.1 (uncharacterized protein LOC111499307 [Cucurbita maxima])

HSP 1 Score: 221.5 bits (563), Expect = 3.3e-54
Identity = 123/257 (47.86%), Postives = 156/257 (60.70%), Query Frame = 0

Query: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFAR--LEVFHPF 60
           MLT QVA +E L  NLLPLL ++  ADFRFSRSTV FT +  +++S ++A+         
Sbjct: 1   MLTFQVAAMEALTYNLLPLLHLAPFADFRFSRSTVFFTASRENSTSCLYAQXXXXXXXXX 60

Query: 61  FILLSSNHPREFHSCIQIDSLFLATFITGTDDRILTIFMPDDHTFSNLVFTTCVGHLEYC 120
                                       GTD+ +LT  MPD    +NL FT  +GHL Y 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXGTDNILLTALMPDQPFCTNLFFTNSIGHLRYN 120

Query: 121 SPMQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMD 180
           + + MGP  N  V  M  G FVA++AEWFRD+ATRL AF+T+I VTA  S+V F A  M+
Sbjct: 121 TILAMGPTPNTNVPEMDDGPFVAIDAEWFRDIATRLCAFNTRIWVTATVSKVTFSAILME 180

Query: 181 FVIPIEGNRCRVEGT-LGGGVRFEVSVIPLQFFIRASELDKMVYFYGSTEKNTLVVFETG 240
           F +P E NRC + G+  G G++F V++IPL FFI+AS LD MVYFY S+  NT V FETG
Sbjct: 181 FALPAEDNRCVIGGSNFGDGIKFPVTLIPLNFFIQASYLDNMVYFYTSSGGNTFVKFETG 240

Query: 241 YWTNIVASNPQDRWEQL 255
            WTNIVA NP+DRWE L
Sbjct: 241 RWTNIVAFNPEDRWEVL 257

BLAST of Carg27104 vs. NCBI nr
Match: XP_023549245.1 (uncharacterized protein LOC111807661 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 2.8e-53
Identity = 121/257 (47.08%), Postives = 157/257 (61.09%), Query Frame = 0

Query: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFAR--LEVFHPF 60
           MLT QVA +E L  NLLPLL ++  ADFRFSRSTV FT +  +++S ++A+         
Sbjct: 1   MLTFQVAAMEALTYNLLPLLHLAPFADFRFSRSTVFFTASRENSTSCLYAQXXXXXXXXX 60

Query: 61  FILLSSNHPREFHSCIQIDSLFLATFITGTDDRILTIFMPDDHTFSNLVFTTCVGHLEYC 120
                                       GTD+ +LT  +PD+   +NL FT  +GHL+Y 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXGTDNILLTALIPDEPFCTNLFFTNSIGHLKYN 120

Query: 121 SPMQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTKISVTAKDSEVKFCAAEMD 180
           + + MGP  N  V  M  G FVA++AEWFRD+ATRL AF+T+I VTA  S+V F A  M+
Sbjct: 121 TILAMGPTPNTNVPEMDDGPFVAIDAEWFRDIATRLCAFNTRIWVTATVSKVTFSAILME 180

Query: 181 FVIPIEGNRCRVEGT-LGGGVRFEVSVIPLQFFIRASELDKMVYFYGSTEKNTLVVFETG 240
           F +P E  RC + G+  G G++F V++IPL FFI+AS LD MVYFY S+  NT V FETG
Sbjct: 181 FALPAEDKRCVIGGSNFGDGIKFPVTLIPLNFFIQASYLDNMVYFYMSSGGNTFVKFETG 240

Query: 241 YWTNIVASNPQDRWEQL 255
            WTNIVA NP+DRWE L
Sbjct: 241 RWTNIVAFNPEDRWEVL 257

BLAST of Carg27104 vs. TrEMBL
Match: tr|A0A0A0K836|A0A0A0K836_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002370 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 58/241 (24.07%), Postives = 103/241 (42.74%), Query Frame = 0

Query: 1   MLTIQVAEVEVLKNNLLPLLQISHHADFRFSRSTVSFTVAGSHNSSLIFARLEVFHPFFI 60
           M TI +     L+  LLP+  +S+ A    S   +SF V   +N     A L +F  FF 
Sbjct: 3   MFTIHIERGNALRRLLLPIANVSNTAQINCSLQCLSFVVTPRNN---FVAVLRIFPSFFT 62

Query: 61  LLSSN-----HPREFHSCIQIDSLFLATFITGTDDRILTIFMPDDHTFSNLV----FTTC 120
               N         FH+ + +  L        TDD  +T+++   + F + V    +   
Sbjct: 63  SFQFNPNFAGQYTSFHARLYLKLLHTNISNMLTDDLSVTVYL---NRFQSTVPVRFYDPR 122

Query: 121 VGHLEYCSPMQMGPPLNIQVASMAGGIFVAVNAEWFRDVATRLSAFSTK---ISVTAKDS 180
            G+L++ S + +     I +  +  G+F A+ ++ F  + T L   + +   I V+  ++
Sbjct: 123 SGYLQF-SALLLARARRINMYPVDMGVFFAIRSDEFLKILTDLRVLAGEYFVIYVSTTNA 182

Query: 181 EVKFCAAEMDFVIPIEGNRCRVEGTLGGGVR--FEVSVIPLQFFIRASELDKMVYFYGST 228
             K    E+ +    + N   + G   GG R  F +   PL FF   + + KMV+F+ + 
Sbjct: 183 LFKSLRREIAYNTQDDENMMVMGGVPTGGARQFFLICPSPLHFFYYTASISKMVWFFIAA 236

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022964052.12.1e-14199.21uncharacterized protein LOC111464196 [Cucurbita moschata][more]
XP_023000119.12.3e-14098.03uncharacterized protein LOC111494411 [Cucurbita maxima][more]
XP_023513812.12.0e-13997.64uncharacterized protein LOC111778309 [Cucurbita pepo subsp. pepo][more]
XP_023006643.13.3e-5447.86uncharacterized protein LOC111499307 [Cucurbita maxima][more]
XP_023549245.12.8e-5347.08uncharacterized protein LOC111807661 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0K836|A0A0A0K836_CUCSA1.2e-0424.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002370 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27104-RACarg27104-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.70.10.10coord: 2..245
e-value: 2.9E-11
score: 45.1